Wall clock time and date at job start Sat Apr 11 2020 02:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31531 * 1 3 3 Si 1.86800 * 119.99856 * 2 1 4 4 H 1.48502 * 109.47575 * 269.99953 * 3 2 1 5 5 H 1.48502 * 109.47260 * 30.00160 * 3 2 1 6 6 H 1.48508 * 109.47365 * 150.00093 * 3 2 1 7 7 C 1.38847 * 120.00417 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00667 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.38532 * 120.00205 * 179.97438 * 9 7 2 11 11 N 1.32779 * 120.38425 * 0.02562 * 10 9 7 12 12 C 1.32521 * 120.40744 * 179.97438 * 11 10 9 13 13 C 1.48326 * 119.21613 * 180.11248 * 12 11 10 14 14 C 1.39390 * 120.11812 * 359.97438 * 13 12 11 15 15 C 1.37995 * 119.90131 * 180.02562 * 14 13 12 16 16 C 1.38333 * 120.13736 * 359.97438 * 15 14 13 17 17 C 1.38417 * 120.23579 * 0.02684 * 16 15 14 18 18 Cl 1.73602 * 119.94680 * 180.02562 * 17 16 15 19 19 C 1.38152 * 120.09848 * 359.71310 * 17 16 15 20 20 N 1.32422 * 121.56213 * 0.09174 * 12 11 10 21 21 C 1.32960 * 121.23589 * 359.97438 * 20 12 11 22 22 C 1.37483 * 119.02105 * 359.83156 * 21 20 12 23 23 C 1.50361 * 122.83009 * 180.60231 * 22 21 20 24 24 C 1.52824 * 110.46847 * 342.41584 * 23 22 21 25 25 C 1.53315 * 108.45334 * 50.81874 * 24 23 22 26 26 C 1.50476 * 118.39497 * 179.77485 * 21 20 12 27 27 H 0.96997 * 120.00319 * 359.97438 * 1 2 3 28 28 H 0.97003 * 119.99405 * 0.02562 * 9 7 2 29 29 H 1.08002 * 120.05452 * 0.02774 * 14 13 12 30 30 H 1.08002 * 119.93179 * 180.02562 * 15 14 13 31 31 H 1.07997 * 119.87592 * 180.02562 * 16 15 14 32 32 H 1.08005 * 120.06691 * 180.27710 * 19 17 16 33 33 H 1.08998 * 109.30192 * 102.72265 * 23 22 21 34 34 H 1.08999 * 109.30620 * 222.10839 * 23 22 21 35 35 H 1.08997 * 109.63923 * 170.51139 * 24 23 22 36 36 H 1.09001 * 109.63879 * 291.13434 * 24 23 22 37 37 H 1.08998 * 109.62759 * 170.58395 * 25 24 23 38 38 H 1.08995 * 109.63402 * 49.99559 * 25 24 23 39 39 H 1.09006 * 109.30218 * 282.63353 * 26 21 20 40 40 H 1.09002 * 109.30111 * 42.01511 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4968 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5469 1.4403 0.7000 7 6 2.0096 -1.2024 -0.0005 8 1 3.0896 -1.2024 -0.0001 9 7 1.3250 -2.3884 -0.0005 10 6 2.0177 -3.5881 -0.0016 11 7 3.3455 -3.5969 -0.0021 12 6 4.0086 -4.7443 -0.0026 13 6 5.4917 -4.7234 -0.0007 14 6 6.1740 -3.5079 0.0011 15 6 7.5539 -3.4937 0.0024 16 6 8.2608 -4.6827 0.0025 17 6 7.5890 -5.8930 0.0006 18 17 8.4836 -7.3807 0.0014 19 6 6.2077 -5.9186 0.0048 20 7 3.3785 -5.9090 -0.0045 21 6 2.0505 -5.9745 -0.0053 22 6 1.3251 -4.8066 -0.0008 23 6 -0.1782 -4.7808 0.0119 24 6 -0.7396 -6.1368 -0.4140 25 6 -0.0601 -7.2277 0.4220 26 6 1.4010 -7.3319 -0.0126 27 1 -0.4850 0.8400 0.0004 28 1 0.3550 -2.3884 -0.0005 29 1 5.6237 -2.5786 0.0016 30 1 8.0831 -2.5522 0.0043 31 1 9.3406 -4.6667 0.0039 32 1 5.6841 -6.8632 0.0078 33 1 -0.5260 -4.5467 1.0180 34 1 -0.5312 -4.0125 -0.6760 35 1 -1.8154 -6.1589 -0.2403 36 1 -0.5327 -6.3033 -1.4712 37 1 -0.5607 -8.1815 0.2556 38 1 -0.1101 -6.9640 1.4783 39 1 1.4488 -7.7488 -1.0186 40 1 1.9347 -7.9903 0.6728 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534948.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:16:53 Heat of formation + Delta-G solvation = 46.455034 kcal Electronic energy + Delta-G solvation = -24830.801660 eV Core-core repulsion = 21249.005968 eV Total energy + Delta-G solvation = -3581.795692 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.099 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.32132 -38.88122 -36.60361 -36.29687 -35.83282 -32.85523 -31.84358 -30.88555 -30.39141 -30.05683 -28.45844 -25.18867 -24.32515 -23.14058 -22.41157 -21.63477 -20.90478 -19.36533 -18.39768 -17.31552 -16.28200 -16.18339 -15.36455 -14.96025 -14.80499 -14.52615 -14.12043 -13.94985 -13.63217 -13.58347 -13.47678 -13.45939 -13.22226 -12.74754 -12.40220 -11.85337 -11.73755 -11.72277 -11.47912 -11.25104 -11.22426 -10.99914 -10.91886 -10.77479 -10.65930 -10.51766 -10.50711 -10.31434 -9.52837 -9.23533 -9.15792 -8.61730 -8.19366 -8.03528 -7.35549 -6.75399 -3.96050 0.99118 1.42556 2.21682 2.24111 2.40828 3.09800 3.10583 3.14912 3.84187 3.91568 4.36446 4.68741 4.69498 4.93372 5.05806 5.10991 5.13233 5.16177 5.22408 5.34024 5.53589 5.59173 5.63144 5.75696 5.84471 5.90349 5.98872 6.00849 6.07421 6.20909 6.22287 6.26420 6.30616 6.35360 6.46619 6.57584 6.63062 6.78739 6.96076 6.96682 7.20141 7.32373 7.71321 8.13071 8.58830 9.04841 9.09079 9.55516 10.39985 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.008985 B = 0.004462 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.420320 B = 6274.387729 C = 9341.121717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.022 3.978 3 Si 0.937 3.063 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.287 4.287 8 H 0.115 0.885 9 N -0.508 5.508 10 C 0.376 3.624 11 N -0.570 5.570 12 C 0.382 3.618 13 C -0.006 4.006 14 C -0.071 4.071 15 C -0.120 4.120 16 C -0.107 4.107 17 C -0.048 4.048 18 Cl -0.081 7.081 19 C -0.069 4.069 20 N -0.605 5.605 21 C 0.197 3.803 22 C -0.275 4.275 23 C -0.057 4.057 24 C -0.114 4.114 25 C -0.116 4.116 26 C -0.062 4.062 27 H 0.278 0.722 28 H 0.409 0.591 29 H 0.145 0.855 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.146 0.854 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.433 -9.659 0.020 11.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.183 4.183 3 Si 0.763 3.237 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.419 4.419 8 H 0.133 0.867 9 N -0.116 5.116 10 C 0.125 3.875 11 N -0.298 5.298 12 C 0.112 3.888 13 C -0.008 4.008 14 C -0.090 4.090 15 C -0.138 4.138 16 C -0.126 4.126 17 C -0.074 4.074 18 Cl -0.052 7.052 19 C -0.089 4.089 20 N -0.331 5.331 21 C 0.060 3.940 22 C -0.289 4.289 23 C -0.095 4.095 24 C -0.152 4.152 25 C -0.154 4.154 26 C -0.100 4.100 27 H 0.088 0.912 28 H 0.247 0.753 29 H 0.163 0.837 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.164 0.836 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.204 -9.288 0.027 11.754 hybrid contribution -0.936 0.872 -0.020 1.279 sum 6.268 -8.416 0.007 10.494 Atomic orbital electron populations 1.69645 1.06175 1.29125 1.47384 1.25450 0.95780 1.00347 0.96734 0.85727 0.79305 0.79918 0.78725 1.20026 1.20627 1.18954 1.20026 0.93956 0.81803 1.46076 0.86706 1.41009 1.08348 1.01933 1.60301 1.18129 0.87901 0.85965 0.95458 1.67691 1.07341 1.29286 1.25528 1.20330 0.92409 0.84228 0.91789 1.18097 0.89297 0.92662 1.00754 1.21565 0.93776 0.98800 0.94890 1.21053 0.93963 0.97607 1.01221 1.21074 1.00171 0.90835 1.00566 1.20737 0.92097 0.86941 1.07647 1.98344 1.75330 1.34358 1.97194 1.21169 0.91096 0.99558 0.97113 1.68041 1.09382 1.28365 1.27296 1.20382 0.88844 0.93662 0.91109 1.19922 0.96333 0.93041 1.19628 1.19987 0.91272 0.97271 1.00988 1.21508 0.99073 0.94790 0.99838 1.21536 0.94873 0.98682 1.00264 1.20208 0.94662 0.92860 1.02231 0.91159 0.75271 0.83693 0.84983 0.85324 0.83648 0.91927 0.91842 0.91904 0.91916 0.91657 0.91717 0.90507 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.54 13.05 55.49 0.72 -21.82 16 2 C 0.02 0.54 5.50 -17.45 -0.10 0.44 16 3 Si 0.94 19.36 29.55 -169.99 -5.02 14.34 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.29 -7.28 9.71 -15.04 -0.15 -7.43 16 8 H 0.12 2.94 7.11 -52.49 -0.37 2.56 16 9 N -0.51 -12.29 5.31 -10.92 -0.06 -12.35 16 10 C 0.38 8.68 7.44 -154.76 -1.15 7.53 16 11 N -0.57 -13.15 8.25 -10.32 -0.09 -13.23 16 12 C 0.38 8.06 7.56 -157.15 -1.19 6.87 16 13 C -0.01 -0.10 5.88 -104.91 -0.62 -0.72 16 14 C -0.07 -1.15 9.56 -39.24 -0.38 -1.53 16 15 C -0.12 -1.57 10.03 -39.64 -0.40 -1.97 16 16 C -0.11 -1.34 9.82 -39.48 -0.39 -1.73 16 17 C -0.05 -0.66 6.31 -39.55 -0.25 -0.91 16 18 Cl -0.08 -1.00 28.95 -51.86 -1.50 -2.50 16 19 C -0.07 -1.10 9.34 -39.21 -0.37 -1.47 16 20 N -0.60 -12.24 9.32 -7.65 -0.07 -12.31 16 21 C 0.20 3.75 6.62 -82.49 -0.55 3.21 16 22 C -0.28 -5.55 5.76 -104.34 -0.60 -6.15 16 23 C -0.06 -0.96 4.95 -28.14 -0.14 -1.10 16 24 C -0.11 -1.54 5.98 -26.66 -0.16 -1.70 16 25 C -0.12 -1.45 5.97 -26.68 -0.16 -1.61 16 26 C -0.06 -0.90 5.95 -28.10 -0.17 -1.06 16 27 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 28 H 0.41 9.72 6.08 -40.82 -0.25 9.47 16 29 H 0.15 2.53 7.51 -52.49 -0.39 2.13 16 30 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.15 2.34 7.51 -52.48 -0.39 1.94 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.12 7.12 -51.93 -0.37 0.75 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.85 8.10 -51.93 -0.42 0.42 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 348.82 15.07 5.26 5.26 Total: -1.00 -27.02 348.82 -12.22 -39.24 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -4.71 Total: 12.71 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -6.75 Total: -9.33 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: 0.51 Total: -59.71 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.02 -12.22 -39.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534948.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.692 kcal (2) G-P(sol) polarization free energy of solvation -27.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds