Wall clock time and date at job start Sat Apr 11 2020 02:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35512 * 117.00310 * 2 1 4 4 C 1.39442 * 120.46550 * 179.97438 * 3 2 1 5 5 C 1.38198 * 118.50446 * 180.02562 * 4 3 2 6 6 N 1.32455 * 119.27077 * 359.97438 * 5 4 3 7 7 C 1.32465 * 120.88909 * 0.02562 * 6 5 4 8 8 N 1.38395 * 119.18995 * 179.97438 * 7 6 5 9 9 N 1.40100 * 119.99761 * 359.97438 * 8 7 6 10 10 C 1.34779 * 119.99791 * 179.97438 * 9 8 7 11 11 O 1.21578 * 119.99701 * 179.97438 * 10 9 8 12 12 N 1.34780 * 120.00256 * 0.02562 * 10 9 8 13 13 C 1.39238 * 120.00018 * 184.02419 * 12 10 9 14 14 C 1.39477 * 119.83919 * 324.47954 * 13 12 10 15 15 C 1.36371 * 120.16946 * 179.75889 * 14 13 12 16 16 C 1.40867 * 119.82824 * 0.50924 * 15 14 13 17 17 C 1.41158 * 120.15965 * 179.71998 * 16 15 14 18 18 H 1.08002 * 119.99369 * 214.79021 * 17 16 15 19 19 C 1.39891 * 120.00322 * 34.79366 * 17 16 15 20 20 N 1.30883 * 120.00037 * 355.59623 * 19 17 16 21 21 Si 1.86805 * 119.99969 * 175.59898 * 19 17 16 22 22 H 1.48501 * 109.47150 * 89.99919 * 21 19 17 23 23 H 1.48502 * 109.46789 * 209.99455 * 21 19 17 24 24 H 1.48492 * 109.46879 * 329.99866 * 21 19 17 25 25 C 1.40864 * 119.67343 * 359.74605 * 16 15 14 26 26 C 1.36375 * 119.82753 * 359.97438 * 25 16 15 27 27 N 1.32486 * 121.62216 * 0.25401 * 7 6 5 28 28 H 1.09005 * 109.46794 * 300.00166 * 1 2 3 29 29 H 1.08996 * 109.46879 * 59.99613 * 1 2 3 30 30 H 1.08998 * 109.47321 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.74637 * 359.97438 * 4 3 2 32 32 H 1.08000 * 120.36174 * 180.02562 * 5 4 3 33 33 H 0.97000 * 120.00016 * 179.97438 * 8 7 6 34 34 H 0.97000 * 120.00176 * 0.02562 * 9 8 7 35 35 H 0.97006 * 119.99432 * 4.30578 * 12 10 9 36 36 H 1.08005 * 119.91175 * 0.02562 * 14 13 12 37 37 H 1.08005 * 120.08622 * 180.25569 * 15 14 13 38 38 H 0.96993 * 119.99927 * 180.02562 * 20 19 17 39 39 H 1.07999 * 120.08745 * 179.97438 * 25 16 15 40 40 H 1.07998 * 119.91269 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4361 1.2916 0.0005 5 6 4.0211 2.5437 0.0011 6 7 3.2484 3.6195 0.0005 7 6 1.9284 3.5087 0.0000 8 7 1.1547 4.6562 0.0000 9 7 1.7692 5.9152 0.0011 10 6 1.0158 7.0328 0.0005 11 8 1.5490 8.1254 0.0019 12 7 -0.3288 6.9391 -0.0005 13 6 -1.1068 8.0907 -0.0857 14 6 -0.6820 9.2630 0.5391 15 6 -1.4363 10.3961 0.4559 16 6 -2.6526 10.3775 -0.2544 17 6 -3.4418 11.5447 -0.3400 18 1 -4.5191 11.4686 -0.3484 19 6 -2.8286 12.7999 -0.4141 20 7 -1.5271 12.8991 -0.3173 21 14 -3.8673 14.3343 -0.6510 22 1 -4.2562 14.8784 0.6748 23 1 -3.0826 15.3534 -1.3934 24 1 -5.0885 13.9910 -1.4228 25 6 -3.0777 9.1883 -0.8783 26 6 -2.3098 8.0646 -0.7912 27 7 1.3305 2.3264 0.0050 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 4.0433 0.3984 0.0014 32 1 5.0964 2.6438 0.0011 33 1 0.1871 4.5887 -0.0008 34 1 2.7368 5.9827 0.0014 35 1 -0.7544 6.0697 0.0622 36 1 0.2489 9.2746 1.0866 37 1 -1.1040 11.3043 0.9368 38 1 -1.1020 13.7694 -0.3682 39 1 -4.0093 9.1664 -1.4242 40 1 -2.6346 7.1520 -1.2686 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154278345.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:18:42 Heat of formation + Delta-G solvation = 68.579563 kcal Electronic energy + Delta-G solvation = -26145.316578 eV Core-core repulsion = 22156.063863 eV Total energy + Delta-G solvation = -3989.252714 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.49959 -40.18557 -38.92599 -37.55967 -36.38395 -34.53532 -33.64978 -32.93391 -32.12183 -29.73695 -29.46028 -28.76596 -27.81471 -25.05681 -24.17465 -23.71705 -21.93056 -21.30038 -20.10575 -19.52424 -19.03464 -17.80077 -17.42500 -17.27908 -16.62567 -16.14320 -15.71361 -15.49983 -15.37292 -15.15771 -14.97579 -14.68872 -14.37022 -13.99030 -13.93394 -13.15926 -12.72813 -12.44280 -12.41478 -12.12999 -11.87653 -11.67405 -11.49682 -11.29284 -11.18000 -10.96019 -10.59931 -10.51974 -10.16317 -9.96213 -9.73231 -9.66818 -9.53079 -9.10403 -8.86431 -7.96536 -7.54020 -6.91639 -6.59647 -4.34031 0.83361 0.92121 1.50807 2.58648 2.64710 3.03203 3.09179 3.10818 3.12304 3.16713 3.45655 3.59889 3.83451 3.98745 4.05256 4.58277 4.71576 4.85225 4.89271 4.91875 5.08910 5.22018 5.26301 5.63405 5.83680 6.09420 6.10814 6.33346 6.48124 6.64703 6.69683 6.84241 7.02238 7.11715 7.21406 7.23748 7.31694 7.62978 7.68995 7.89860 7.99005 8.08333 8.28432 8.38544 8.66249 8.77229 8.92969 9.00175 10.31223 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.030247 B = 0.002081 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.500639 B =13449.790390 C =14275.187822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.300 6.300 3 C 0.409 3.591 4 C -0.306 4.306 5 C 0.223 3.777 6 N -0.590 5.590 7 C 0.607 3.393 8 N -0.492 5.492 9 N -0.524 5.524 10 C 0.704 3.296 11 O -0.550 6.550 12 N -0.663 5.663 13 C 0.016 3.984 14 C -0.092 4.092 15 C -0.143 4.143 16 C 0.100 3.900 17 C -0.462 4.462 18 H 0.076 0.924 19 C 0.068 3.932 20 N -0.806 5.806 21 Si 0.915 3.085 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.264 1.264 25 C -0.203 4.203 26 C -0.112 4.112 27 N -0.622 5.622 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.151 0.849 32 H 0.178 0.822 33 H 0.435 0.565 34 H 0.441 0.559 35 H 0.386 0.614 36 H 0.109 0.891 37 H 0.132 0.868 38 H 0.279 0.721 39 H 0.097 0.903 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.868 -22.668 1.107 23.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.203 6.203 3 C 0.220 3.780 4 C -0.333 4.333 5 C 0.058 3.942 6 N -0.317 5.317 7 C 0.249 3.751 8 N -0.227 5.227 9 N -0.283 5.283 10 C 0.404 3.596 11 O -0.421 6.421 12 N -0.311 5.311 13 C -0.077 4.077 14 C -0.113 4.113 15 C -0.163 4.163 16 C 0.098 3.902 17 C -0.493 4.493 18 H 0.094 0.906 19 C -0.147 4.147 20 N -0.433 5.433 21 Si 0.740 3.260 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.188 1.188 25 C -0.223 4.223 26 C -0.132 4.132 27 N -0.363 5.363 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.118 0.882 31 H 0.169 0.831 32 H 0.195 0.805 33 H 0.280 0.720 34 H 0.288 0.712 35 H 0.219 0.781 36 H 0.127 0.873 37 H 0.149 0.851 38 H 0.090 0.910 39 H 0.116 0.884 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.870 -20.906 1.093 22.033 hybrid contribution -0.400 -0.574 -0.264 0.747 sum 6.470 -21.480 0.829 22.448 Atomic orbital electron populations 1.22982 0.76475 1.03453 1.03041 1.86269 1.23599 1.23843 1.86590 1.19665 0.89169 0.83621 0.85528 1.21589 0.92390 1.01095 1.18250 1.22760 1.00076 0.85696 0.85639 1.67822 1.03576 1.34625 1.25711 1.18326 0.85363 0.83730 0.87696 1.42503 1.06399 0.94247 1.79555 1.44740 1.08981 0.92150 1.82436 1.15829 0.82213 0.82539 0.79022 1.91060 1.71198 1.22181 1.57676 1.42119 1.03513 1.09095 1.76348 1.17050 0.94692 0.86492 1.09426 1.20660 0.99153 0.92453 0.98987 1.21311 0.96734 0.97047 1.01214 1.17739 0.92403 0.91730 0.88360 1.19476 0.94503 0.90309 1.44988 0.90620 1.25901 0.95178 1.00711 0.92915 1.69786 1.09752 1.26268 1.37513 0.86198 0.80320 0.80350 0.79094 1.19530 1.20300 1.18777 1.20674 1.01384 0.94139 1.06145 1.20035 0.95433 0.97766 0.99977 1.67117 1.41465 0.97511 1.30174 0.91801 0.91805 0.88201 0.83148 0.80535 0.72018 0.71216 0.78065 0.87337 0.85069 0.91029 0.88447 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.41 101.05 1.05 1.28 16 2 O -0.30 -2.63 10.49 -18.23 -0.19 -2.82 16 3 C 0.41 4.03 7.53 -16.72 -0.13 3.90 16 4 C -0.31 -2.43 10.12 -39.15 -0.40 -2.82 16 5 C 0.22 1.78 11.29 -17.30 -0.20 1.58 16 6 N -0.59 -6.50 9.37 -14.00 -0.13 -6.63 16 7 C 0.61 7.10 8.54 -322.87 -2.76 4.35 16 8 N -0.49 -5.76 6.41 29.75 0.19 -5.57 16 9 N -0.52 -7.31 6.28 27.63 0.17 -7.14 16 10 C 0.70 12.65 8.50 -86.91 -0.74 11.91 16 11 O -0.55 -12.32 14.62 5.30 0.08 -12.24 16 12 N -0.66 -11.49 5.26 -14.10 -0.07 -11.56 16 13 C 0.02 0.34 6.30 -83.57 -0.53 -0.18 16 14 C -0.09 -2.28 8.61 -39.79 -0.34 -2.63 16 15 C -0.14 -3.81 8.61 -39.26 -0.34 -4.15 16 16 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 17 C -0.46 -12.25 9.02 -37.86 -0.34 -12.59 16 18 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 19 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16 20 N -0.81 -21.48 10.60 55.54 0.59 -20.90 16 21 Si 0.92 19.08 29.56 -169.99 -5.03 14.06 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 23 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 25 C -0.20 -4.85 9.74 -39.26 -0.38 -5.23 16 26 C -0.11 -2.39 9.90 -39.79 -0.39 -2.79 16 27 N -0.62 -6.79 9.40 -13.99 -0.13 -6.92 16 28 H 0.06 0.42 8.12 -51.93 -0.42 0.00 16 29 H 0.06 0.42 8.12 -51.93 -0.42 0.00 16 30 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 32 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.44 4.41 6.83 -182.60 -1.25 3.17 16 34 H 0.44 5.98 8.01 -182.60 -1.46 4.52 16 35 H 0.39 5.17 6.75 -40.82 -0.28 4.89 16 36 H 0.11 2.70 6.24 -52.48 -0.33 2.37 16 37 H 0.13 3.67 6.13 -52.48 -0.32 3.34 16 38 H 0.28 6.82 8.30 -40.82 -0.34 6.49 16 39 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 349.57 15.07 5.27 5.27 Total: -1.00 -32.10 349.57 -11.56 -43.67 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -6.14 Total: 14.43 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -6.17 Total: -3.64 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.62 Total: -58.72 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.11 Total: -15.06 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.10 -11.56 -43.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154278345.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.248 kcal (2) G-P(sol) polarization free energy of solvation -32.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds