Wall clock time and date at job start Sat Apr 11 2020 02:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37897 * 120.01496 * 2 1 4 4 C 1.38635 * 120.65532 * 179.97438 * 3 2 1 5 5 C 1.37889 * 120.19694 * 359.55978 * 4 3 2 6 6 C 1.39054 * 119.63240 * 0.02562 * 5 4 3 7 7 C 1.47684 * 134.26685 * 180.02562 * 6 5 4 8 8 C 1.46926 * 127.14777 * 0.02562 * 7 6 5 9 9 O 1.21571 * 119.99889 * 359.70741 * 8 7 6 10 10 O 1.34812 * 119.99899 * 179.70532 * 8 7 6 11 11 C 1.45201 * 117.00185 * 179.97438 * 10 8 7 12 12 C 1.53031 * 109.46452 * 150.00128 * 11 10 8 13 13 C 1.53189 * 109.31453 * 181.38925 * 12 11 10 14 14 N 1.46923 * 108.89141 * 305.29105 * 13 12 11 15 15 C 1.36942 * 120.62973 * 233.67281 * 14 13 12 16 16 H 1.08009 * 119.99402 * 152.59682 * 15 14 13 17 17 C 1.38805 * 120.00238 * 332.59801 * 15 14 13 18 18 N 1.31625 * 120.00214 * 159.34567 * 17 15 14 19 19 Si 1.86801 * 120.00062 * 339.34781 * 17 15 14 20 20 H 1.48499 * 109.47084 * 92.95592 * 19 17 15 21 21 H 1.48493 * 109.47117 * 212.95272 * 19 17 15 22 22 H 1.48495 * 109.46871 * 332.95714 * 19 17 15 23 23 C 1.47204 * 118.55713 * 53.54081 * 14 13 12 24 24 C 1.53041 * 109.46115 * 270.07109 * 11 10 8 25 25 C 1.36143 * 105.70664 * 179.74112 * 7 6 5 26 26 O 1.33777 * 109.84150 * 0.24296 * 25 7 6 27 27 C 1.34914 * 111.37237 * 0.02562 * 26 25 7 28 28 H 1.09001 * 109.46863 * 270.74312 * 1 2 3 29 29 H 1.08998 * 109.47437 * 30.73995 * 1 2 3 30 30 H 1.09006 * 109.46988 * 150.74263 * 1 2 3 31 31 H 1.08005 * 119.66427 * 359.48818 * 3 2 1 32 32 H 1.08001 * 119.90097 * 179.58404 * 4 3 2 33 33 H 1.08000 * 120.18061 * 180.02562 * 5 4 3 34 34 H 1.09006 * 109.44667 * 30.02985 * 11 10 8 35 35 H 1.09002 * 109.49720 * 61.43153 * 12 11 10 36 36 H 1.09000 * 109.49696 * 301.33856 * 12 11 10 37 37 H 1.08997 * 109.58812 * 65.15319 * 13 12 11 38 38 H 1.09002 * 109.58574 * 185.43314 * 13 12 11 39 39 H 0.96996 * 120.00339 * 180.02562 * 18 17 15 40 40 H 1.08991 * 109.53869 * 186.66950 * 23 14 13 41 41 H 1.09004 * 109.67659 * 66.36251 * 23 14 13 42 42 H 1.09001 * 109.49972 * 298.56680 * 24 11 10 43 43 H 1.09007 * 109.49670 * 58.62681 * 24 11 10 44 44 H 1.07994 * 125.08206 * 180.28172 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1940 0.0000 4 6 3.5830 1.2095 0.0005 5 6 4.2898 0.0256 0.0102 6 6 3.6045 -1.1842 0.0189 7 6 4.0165 -2.6024 0.0306 8 6 5.3887 -3.1276 0.0370 9 8 6.3328 -2.3616 0.0273 10 8 5.6009 -4.4588 0.0537 11 6 6.9822 -4.9062 0.0586 12 6 7.0827 -6.2429 0.7969 13 6 8.5461 -6.6946 0.8301 14 7 9.0653 -6.7269 -0.5439 15 6 9.6551 -7.8587 -1.0405 16 1 9.6342 -8.0572 -2.1020 17 6 10.2797 -8.7507 -0.1797 18 7 10.4830 -9.9955 -0.5559 19 14 10.8316 -8.1844 1.5127 20 1 9.7596 -8.4629 2.5019 21 1 12.0651 -8.9143 1.9010 22 1 11.1088 -6.7259 1.4806 23 6 8.9347 -5.5184 -1.3742 24 6 7.4670 -5.0799 -1.3826 25 6 2.8609 -3.3219 0.0408 26 8 1.8103 -2.4938 0.0311 27 6 2.2019 -1.2029 0.0138 28 1 -0.3633 0.0133 1.0276 29 1 -0.3634 0.8832 -0.5253 30 1 -0.3633 -0.8966 -0.5023 31 1 1.6515 2.1263 -0.0084 32 1 4.1109 2.1517 -0.0063 33 1 5.3698 0.0380 0.0111 34 1 7.6020 -4.1650 0.5632 35 1 6.4827 -6.9908 0.2785 36 1 6.7155 -6.1239 1.8162 37 1 9.1314 -5.9939 1.4255 38 1 8.6113 -7.6902 1.2689 39 1 10.9191 -10.6189 0.0458 40 1 9.2561 -5.7389 -2.3920 41 1 9.5520 -4.7207 -0.9608 42 1 6.8634 -5.8387 -1.8806 43 1 7.3727 -4.1332 -1.9148 44 1 2.8011 -4.4001 0.0552 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820309218.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:17:21 Heat of formation + Delta-G solvation = -34.999562 kcal Electronic energy + Delta-G solvation = -27427.871475 eV Core-core repulsion = 23505.374825 eV Total energy + Delta-G solvation = -3922.496650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.97203 -40.24530 -38.46873 -37.72213 -35.96451 -34.00241 -32.75718 -31.90384 -30.67505 -30.44120 -29.91120 -27.26538 -25.62785 -24.25438 -23.07407 -22.72722 -22.68344 -21.73772 -20.03413 -19.62537 -18.33762 -17.48964 -17.02770 -16.75951 -16.68594 -15.99810 -15.66147 -15.59108 -15.07170 -14.66692 -14.22957 -13.92105 -13.88525 -13.83564 -13.53080 -13.26245 -13.20758 -12.85013 -12.71539 -12.46421 -12.27042 -12.10235 -12.03445 -11.88567 -11.36766 -11.35170 -10.89591 -10.81673 -10.61951 -10.47811 -10.36800 -10.16376 -9.89626 -9.77949 -9.44530 -9.00691 -8.68729 -8.51491 -7.06292 -5.98569 -3.35371 0.38334 0.93402 1.33987 2.22813 2.66790 2.85789 3.28497 3.37573 3.46524 3.49219 4.04656 4.23633 4.35958 4.49067 4.49678 4.84469 4.85811 4.96124 4.99469 5.04073 5.09922 5.12525 5.17121 5.20066 5.34960 5.38246 5.50353 5.53905 5.73104 5.82514 5.92409 5.94943 5.98974 6.07136 6.10068 6.13754 6.21114 6.23199 6.30685 6.50970 6.54979 6.60118 6.63562 6.68077 6.89066 7.82333 7.89964 8.28619 8.87830 9.66872 10.03506 11.17140 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.031360 B = 0.002391 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.633857 B =11709.219410 C =11986.356890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.069 4.069 3 C -0.098 4.098 4 C -0.125 4.125 5 C -0.070 4.070 6 C -0.086 4.086 7 C -0.222 4.222 8 C 0.534 3.466 9 O -0.504 6.504 10 O -0.354 6.354 11 C 0.101 3.899 12 C -0.129 4.129 13 C 0.128 3.872 14 N -0.606 5.606 15 C -0.261 4.261 16 H 0.087 0.913 17 C 0.024 3.976 18 N -0.906 5.906 19 Si 0.880 3.120 20 H -0.287 1.287 21 H -0.302 1.302 22 H -0.270 1.270 23 C 0.152 3.848 24 C -0.148 4.148 25 C 0.101 3.899 26 O -0.180 6.180 27 C 0.044 3.956 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.029 0.971 38 H 0.082 0.918 39 H 0.263 0.737 40 H 0.071 0.929 41 H 0.028 0.972 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.636 20.747 2.215 29.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.070 4.070 3 C -0.116 4.116 4 C -0.143 4.143 5 C -0.088 4.088 6 C -0.087 4.087 7 C -0.224 4.224 8 C 0.379 3.621 9 O -0.393 6.393 10 O -0.271 6.271 11 C 0.047 3.953 12 C -0.168 4.168 13 C 0.002 3.998 14 N -0.330 5.330 15 C -0.389 4.389 16 H 0.105 0.895 17 C -0.175 4.175 18 N -0.549 5.549 19 Si 0.710 3.290 20 H -0.215 1.215 21 H -0.230 1.230 22 H -0.195 1.195 23 C 0.025 3.975 24 C -0.188 4.188 25 C 0.033 3.967 26 O -0.079 6.079 27 C -0.002 4.002 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.154 0.846 32 H 0.151 0.849 33 H 0.156 0.844 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.047 0.953 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.045 0.955 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -20.508 20.704 2.221 29.226 hybrid contribution 0.705 0.122 0.995 1.225 sum -19.802 20.826 3.216 28.917 Atomic orbital electron populations 1.20755 0.90130 1.03294 1.02790 1.18805 0.96292 0.88205 1.03680 1.20868 0.94213 0.96421 1.00141 1.21113 0.93935 0.98066 1.01175 1.20714 1.00999 0.89784 0.97259 1.19334 0.92429 0.92334 1.04559 1.20085 0.91826 0.92493 1.18023 1.19742 0.87807 0.81502 0.73032 1.90828 1.43842 1.58577 1.46051 1.86584 1.34022 1.22935 1.83579 1.22905 0.77445 0.96629 0.98321 1.22249 1.00625 0.94650 0.99320 1.21379 0.90221 1.00370 0.87802 1.44492 1.67496 1.10784 1.10189 1.18915 1.29350 0.95861 0.94773 0.89511 1.25285 0.98587 0.95697 0.97963 1.69833 1.45093 1.02716 1.37242 0.86987 0.77775 0.79028 0.85177 1.21511 1.22972 1.19472 1.20928 0.91522 0.88671 0.96334 1.22469 1.00198 1.01323 0.94764 1.24836 0.82993 0.96396 0.92490 1.83866 1.34763 1.14748 1.74533 1.19335 0.92149 0.83393 1.05341 0.90821 0.90921 0.91227 0.84575 0.84890 0.84399 0.90055 0.90368 0.91837 0.95346 0.90022 0.92684 0.91096 0.95451 0.90819 0.92107 0.75483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.00 0.36 -0.32 16 2 C -0.07 -0.61 5.89 -104.49 -0.62 -1.22 16 3 C -0.10 -0.75 9.67 -39.56 -0.38 -1.13 16 4 C -0.12 -1.07 10.04 -39.56 -0.40 -1.47 16 5 C -0.07 -0.79 9.88 -39.41 -0.39 -1.18 16 6 C -0.09 -1.07 6.29 -104.97 -0.66 -1.73 16 7 C -0.22 -2.85 6.30 -103.28 -0.65 -3.50 16 8 C 0.53 8.23 7.92 34.25 0.27 8.50 16 9 O -0.50 -8.94 15.54 -19.32 -0.30 -9.24 16 10 O -0.35 -5.47 9.72 -40.80 -0.40 -5.87 16 11 C 0.10 1.73 2.42 -26.69 -0.06 1.66 16 12 C -0.13 -2.30 5.74 -26.62 -0.15 -2.45 16 13 C 0.13 2.77 4.20 -3.71 -0.02 2.76 16 14 N -0.61 -14.36 2.78 -172.10 -0.48 -14.84 16 15 C -0.26 -7.23 10.05 -15.06 -0.15 -7.38 16 16 H 0.09 2.56 8.06 -52.48 -0.42 2.13 16 17 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 18 N -0.91 -27.52 13.97 55.49 0.78 -26.75 16 19 Si 0.88 22.12 24.35 -169.99 -4.14 17.98 16 20 H -0.29 -6.90 6.62 56.52 0.37 -6.53 16 21 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 22 H -0.27 -6.69 6.63 56.52 0.38 -6.32 16 23 C 0.15 3.03 6.53 -3.56 -0.02 3.01 16 24 C -0.15 -2.59 5.72 -26.61 -0.15 -2.74 16 25 C 0.10 0.98 11.82 29.98 0.35 1.34 16 26 O -0.18 -1.84 10.53 5.40 0.06 -1.78 16 27 C 0.04 0.48 7.05 -38.56 -0.27 0.21 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 30 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 31 H 0.14 0.63 8.06 -52.48 -0.42 0.20 16 32 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.14 1.65 7.54 -52.49 -0.40 1.25 16 34 H 0.08 1.47 7.16 -51.93 -0.37 1.09 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.03 0.61 7.08 -51.93 -0.37 0.24 16 38 H 0.08 1.91 4.49 -51.93 -0.23 1.67 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.07 1.39 7.94 -51.93 -0.41 0.98 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 44 H 0.23 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 361.78 15.07 5.45 5.45 Total: -1.00 -32.98 361.78 -8.10 -41.08 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -6.04 Total: -0.99 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -3.03 Total: -5.05 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.30 Total: -41.58 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.64 Total: -16.89 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.14 Total: 17.98 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.98 -8.10 -41.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820309218.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.078 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds