Wall clock time and date at job start Sat Apr 11 2020 02:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37897 * 120.01496 * 2 1 4 4 C 1.38635 * 120.65532 * 179.97438 * 3 2 1 5 5 C 1.37889 * 120.19694 * 359.55978 * 4 3 2 6 6 C 1.39054 * 119.63240 * 0.02562 * 5 4 3 7 7 C 1.47684 * 134.26685 * 180.02562 * 6 5 4 8 8 C 1.46926 * 127.14777 * 0.02562 * 7 6 5 9 9 O 1.21571 * 119.99889 * 359.70741 * 8 7 6 10 10 O 1.34812 * 119.99899 * 179.70532 * 8 7 6 11 11 C 1.45201 * 117.00185 * 179.97438 * 10 8 7 12 12 C 1.53031 * 109.46452 * 150.00128 * 11 10 8 13 13 C 1.53189 * 109.31453 * 181.38925 * 12 11 10 14 14 N 1.46923 * 108.89141 * 305.29105 * 13 12 11 15 15 C 1.36942 * 120.62973 * 233.67281 * 14 13 12 16 16 H 1.08009 * 119.99402 * 152.59682 * 15 14 13 17 17 C 1.38805 * 120.00238 * 332.59801 * 15 14 13 18 18 N 1.31625 * 120.00214 * 159.34567 * 17 15 14 19 19 Si 1.86801 * 120.00062 * 339.34781 * 17 15 14 20 20 H 1.48499 * 109.47084 * 92.95592 * 19 17 15 21 21 H 1.48493 * 109.47117 * 212.95272 * 19 17 15 22 22 H 1.48495 * 109.46871 * 332.95714 * 19 17 15 23 23 C 1.47204 * 118.55713 * 53.54081 * 14 13 12 24 24 C 1.53041 * 109.46115 * 270.07109 * 11 10 8 25 25 C 1.36143 * 105.70664 * 179.74112 * 7 6 5 26 26 O 1.33777 * 109.84150 * 0.24296 * 25 7 6 27 27 C 1.34914 * 111.37237 * 0.02562 * 26 25 7 28 28 H 1.09001 * 109.46863 * 270.74312 * 1 2 3 29 29 H 1.08998 * 109.47437 * 30.73995 * 1 2 3 30 30 H 1.09006 * 109.46988 * 150.74263 * 1 2 3 31 31 H 1.08005 * 119.66427 * 359.48818 * 3 2 1 32 32 H 1.08001 * 119.90097 * 179.58404 * 4 3 2 33 33 H 1.08000 * 120.18061 * 180.02562 * 5 4 3 34 34 H 1.09006 * 109.44667 * 30.02985 * 11 10 8 35 35 H 1.09002 * 109.49720 * 61.43153 * 12 11 10 36 36 H 1.09000 * 109.49696 * 301.33856 * 12 11 10 37 37 H 1.08997 * 109.58812 * 65.15319 * 13 12 11 38 38 H 1.09002 * 109.58574 * 185.43314 * 13 12 11 39 39 H 0.96996 * 120.00339 * 180.02562 * 18 17 15 40 40 H 1.08991 * 109.53869 * 186.66950 * 23 14 13 41 41 H 1.09004 * 109.67659 * 66.36251 * 23 14 13 42 42 H 1.09001 * 109.49972 * 298.56680 * 24 11 10 43 43 H 1.09007 * 109.49670 * 58.62681 * 24 11 10 44 44 H 1.07994 * 125.08206 * 180.28172 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1940 0.0000 4 6 3.5830 1.2095 0.0005 5 6 4.2898 0.0256 0.0102 6 6 3.6045 -1.1842 0.0189 7 6 4.0165 -2.6024 0.0306 8 6 5.3887 -3.1276 0.0370 9 8 6.3328 -2.3616 0.0273 10 8 5.6009 -4.4588 0.0537 11 6 6.9822 -4.9062 0.0586 12 6 7.0827 -6.2429 0.7969 13 6 8.5461 -6.6946 0.8301 14 7 9.0653 -6.7269 -0.5439 15 6 9.6551 -7.8587 -1.0405 16 1 9.6342 -8.0572 -2.1020 17 6 10.2797 -8.7507 -0.1797 18 7 10.4830 -9.9955 -0.5559 19 14 10.8316 -8.1844 1.5127 20 1 9.7596 -8.4629 2.5019 21 1 12.0651 -8.9143 1.9010 22 1 11.1088 -6.7259 1.4806 23 6 8.9347 -5.5184 -1.3742 24 6 7.4670 -5.0799 -1.3826 25 6 2.8609 -3.3219 0.0408 26 8 1.8103 -2.4938 0.0311 27 6 2.2019 -1.2029 0.0138 28 1 -0.3633 0.0133 1.0276 29 1 -0.3634 0.8832 -0.5253 30 1 -0.3633 -0.8966 -0.5023 31 1 1.6515 2.1263 -0.0084 32 1 4.1109 2.1517 -0.0063 33 1 5.3698 0.0380 0.0111 34 1 7.6020 -4.1650 0.5632 35 1 6.4827 -6.9908 0.2785 36 1 6.7155 -6.1239 1.8162 37 1 9.1314 -5.9939 1.4255 38 1 8.6113 -7.6902 1.2689 39 1 10.9191 -10.6189 0.0458 40 1 9.2561 -5.7389 -2.3920 41 1 9.5520 -4.7207 -0.9608 42 1 6.8634 -5.8387 -1.8806 43 1 7.3727 -4.1332 -1.9148 44 1 2.8011 -4.4001 0.0552 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820309218.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:17:21 Heat of formation + Delta-G solvation = -53.606796 kcal Electronic energy + Delta-G solvation = -27428.678346 eV Core-core repulsion = 23505.374825 eV Total energy + Delta-G solvation = -3923.303520 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.75410 -41.50804 -39.29473 -39.13639 -37.35452 -34.84434 -34.55416 -32.80939 -32.27876 -32.07521 -30.73138 -27.83976 -27.27513 -25.56034 -24.54982 -23.80361 -23.43598 -23.16971 -21.24775 -21.05669 -19.27343 -18.95105 -18.24463 -17.88930 -17.59913 -17.20381 -16.83303 -16.77589 -16.37304 -16.00359 -15.44823 -15.33455 -15.19996 -14.75150 -14.58172 -14.44785 -14.35710 -14.26046 -13.92372 -13.80205 -13.57970 -13.25541 -12.95411 -12.82294 -12.62845 -12.60318 -12.46481 -12.23709 -12.10467 -12.03890 -11.75296 -11.65087 -11.47947 -11.20324 -11.13356 -10.75640 -9.72781 -9.25500 -9.04063 -8.18284 -5.52150 -0.39768 0.19363 0.48698 1.28522 1.34978 1.41880 1.50257 1.62228 1.83689 2.39516 2.62990 3.00341 3.22386 3.28248 3.40436 3.62939 3.65814 3.74739 3.90214 3.99994 4.04886 4.19062 4.25424 4.27055 4.36694 4.41278 4.52502 4.53851 4.66200 4.68918 4.78810 4.81649 4.85416 4.88245 4.93934 4.94807 5.08649 5.17611 5.23250 5.26681 5.36939 5.43202 5.44829 5.52424 5.82647 5.96262 6.10216 6.63145 6.84944 7.56150 7.96631 9.01162 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.031360 B = 0.002391 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.633857 B =11709.219410 C =11986.356890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.069 4.069 3 C -0.095 4.095 4 C -0.115 4.115 5 C -0.103 4.103 6 C -0.110 4.110 7 C -0.264 4.264 8 C 0.537 3.463 9 O -0.536 6.536 10 O -0.345 6.345 11 C 0.106 3.894 12 C -0.118 4.118 13 C 0.122 3.878 14 N -0.620 5.620 15 C -0.251 4.251 16 H 0.055 0.945 17 C -0.032 4.032 18 N -0.953 5.953 19 Si 0.942 3.058 20 H -0.268 1.268 21 H -0.310 1.310 22 H -0.264 1.264 23 C 0.149 3.851 24 C -0.137 4.137 25 C 0.135 3.865 26 O -0.176 6.176 27 C 0.024 3.976 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.174 0.826 32 H 0.158 0.842 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.036 0.964 38 H 0.065 0.935 39 H 0.263 0.737 40 H 0.067 0.933 41 H 0.035 0.965 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.517 23.146 3.415 33.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.070 4.070 3 C -0.113 4.113 4 C -0.133 4.133 5 C -0.121 4.121 6 C -0.111 4.111 7 C -0.266 4.266 8 C 0.384 3.616 9 O -0.427 6.427 10 O -0.262 6.262 11 C 0.051 3.949 12 C -0.157 4.157 13 C -0.003 4.003 14 N -0.345 5.345 15 C -0.380 4.380 16 H 0.073 0.927 17 C -0.227 4.227 18 N -0.599 5.599 19 Si 0.771 3.229 20 H -0.194 1.194 21 H -0.238 1.238 22 H -0.188 1.188 23 C 0.024 3.976 24 C -0.176 4.176 25 C 0.067 3.933 26 O -0.075 6.075 27 C -0.022 4.022 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.191 0.809 32 H 0.176 0.824 33 H 0.137 0.863 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.053 0.947 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -23.435 23.150 3.430 33.119 hybrid contribution 1.480 -0.507 0.531 1.652 sum -21.955 22.643 3.961 31.787 Atomic orbital electron populations 1.20830 0.88010 1.04248 1.03724 1.19305 0.97906 0.87681 1.02080 1.21325 0.93835 0.97545 0.98585 1.21461 0.94731 0.97985 0.99110 1.20764 1.00457 0.90923 0.99939 1.19590 0.93531 0.92498 1.05514 1.20044 0.91244 0.93454 1.21877 1.20137 0.88631 0.80908 0.71947 1.90809 1.45012 1.59032 1.47879 1.86569 1.32544 1.23328 1.83749 1.22656 0.78413 0.96179 0.97608 1.22046 0.97836 0.94705 1.01157 1.21422 0.92698 0.99770 0.86445 1.44600 1.67705 1.10748 1.11409 1.18840 1.28700 0.96906 0.93563 0.92714 1.25889 0.99262 0.95601 1.01974 1.69956 1.46991 1.03942 1.39014 0.85977 0.77229 0.78468 0.81256 1.19415 1.23838 1.18846 1.21040 0.93428 0.87498 0.95678 1.22293 0.98204 1.01613 0.95478 1.25458 0.81841 0.97452 0.88591 1.83886 1.34690 1.14783 1.74127 1.19658 0.91743 0.84122 1.06636 0.89793 0.88692 0.91575 0.80880 0.82429 0.86257 0.90719 0.90613 0.89033 0.94578 0.91712 0.92805 0.91446 0.94663 0.91065 0.90995 0.72010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 71.23 0.71 -0.25 16 2 C -0.07 -1.03 5.89 -19.78 -0.12 -1.15 16 3 C -0.10 -1.15 9.67 22.28 0.22 -0.93 16 4 C -0.12 -1.77 10.04 22.28 0.22 -1.55 16 5 C -0.10 -2.36 9.88 22.38 0.22 -2.14 16 6 C -0.11 -2.73 6.29 -20.09 -0.13 -2.86 16 7 C -0.26 -6.60 6.30 -18.99 -0.12 -6.72 16 8 C 0.54 16.28 7.92 70.10 0.55 16.84 16 9 O -0.54 -19.27 15.54 19.60 0.30 -18.97 16 10 O -0.35 -10.13 9.72 -57.24 -0.56 -10.68 16 11 C 0.11 3.48 2.42 30.62 0.07 3.55 16 12 C -0.12 -3.98 5.74 30.67 0.18 -3.81 16 13 C 0.12 5.09 4.20 86.36 0.36 5.46 16 14 N -0.62 -29.27 2.78 -698.40 -1.94 -31.21 16 15 C -0.25 -14.18 10.05 84.03 0.84 -13.34 16 16 H 0.06 3.37 8.06 -2.91 -0.02 3.35 16 17 C -0.03 -1.87 5.23 84.86 0.44 -1.43 16 18 N -0.95 -59.49 13.97 21.65 0.30 -59.19 16 19 Si 0.94 46.00 24.35 68.60 1.67 47.67 16 20 H -0.27 -12.12 6.62 99.48 0.66 -11.46 16 21 H -0.31 -15.40 7.11 99.48 0.71 -14.70 16 22 H -0.26 -12.48 6.63 99.48 0.66 -11.82 16 23 C 0.15 5.90 6.53 86.31 0.56 6.47 16 24 C -0.14 -4.66 5.72 30.67 0.18 -4.49 16 25 C 0.14 2.35 11.82 67.33 0.80 3.15 16 26 O -0.18 -3.25 10.53 -3.61 -0.04 -3.29 16 27 C 0.02 0.49 7.05 22.93 0.16 0.65 16 28 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.09 0.41 8.09 -2.39 -0.02 0.39 16 30 H 0.07 0.64 8.09 -2.38 -0.02 0.62 16 31 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 32 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 33 H 0.12 3.06 7.54 -2.91 -0.02 3.04 16 34 H 0.07 2.60 7.16 -2.38 -0.02 2.59 16 35 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.04 1.47 7.08 -2.39 -0.02 1.45 16 38 H 0.06 2.93 4.49 -2.39 -0.01 2.92 16 39 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 40 H 0.07 2.68 7.94 -2.39 -0.02 2.66 16 41 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 44 H 0.26 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -73.86 361.78 5.82 -68.04 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 0.92 Total: 10.18 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 5.16 Total: -2.54 kcal Atomic # 7 Polarization: -88.76 SS G_CDS: -1.64 Total: -90.40 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -0.29 Total: -32.94 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.67 Total: 47.67 kcal Total: -73.86 5.82 -68.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820309218.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.430 kcal (2) G-P(sol) polarization free energy of solvation -73.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds