Wall clock time and date at job start Sat Apr 11 2020 02:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38759 * 119.66418 * 2 1 4 4 C 1.36663 * 120.49147 * 179.97438 * 3 2 1 5 5 C 1.39828 * 119.72619 * 359.97438 * 4 3 2 6 6 C 1.46609 * 121.05484 * 179.97438 * 5 4 3 7 7 C 1.50698 * 120.90808 * 0.02562 * 6 5 4 8 8 N 1.46904 * 109.47407 * 80.00324 * 7 6 5 9 9 C 1.48559 * 111.00066 * 69.86567 * 8 7 6 10 10 C 1.54387 * 104.58955 * 159.04379 * 9 8 7 11 11 C 1.54259 * 105.06271 * 336.15098 * 10 9 8 12 12 O 1.42894 * 110.32466 * 118.89659 * 11 10 9 13 13 C 1.50702 * 110.32122 * 241.00360 * 11 10 9 14 14 H 1.08000 * 120.00018 * 118.54543 * 13 11 10 15 15 C 1.37878 * 119.99808 * 298.54411 * 13 11 10 16 16 N 1.31514 * 120.00305 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99911 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46818 * 89.99867 * 17 15 13 19 19 H 1.48492 * 109.47149 * 210.00198 * 17 15 13 20 20 H 1.48501 * 109.47156 * 330.00335 * 17 15 13 21 21 C 1.48560 * 111.00239 * 185.29090 * 8 7 6 22 22 C 1.35705 * 118.17321 * 180.27289 * 6 5 4 23 23 C 1.41177 * 119.80369 * 359.55492 * 22 6 5 24 24 O 1.21778 * 119.16537 * 180.23630 * 23 22 6 25 25 O 1.34195 * 121.67687 * 0.43879 * 23 22 6 26 26 C 1.35003 * 121.47364 * 359.79994 * 25 23 22 27 27 C 1.37913 * 119.66100 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47734 * 269.98181 * 1 2 3 29 29 H 1.09004 * 109.47297 * 29.98138 * 1 2 3 30 30 H 1.09003 * 109.47562 * 149.98053 * 1 2 3 31 31 H 1.07993 * 119.75129 * 0.02562 * 3 2 1 32 32 H 1.08004 * 120.13524 * 180.02562 * 4 3 2 33 33 H 1.08996 * 109.47595 * 319.99405 * 7 6 5 34 34 H 1.09004 * 109.46561 * 199.99544 * 7 6 5 35 35 H 1.08999 * 110.40971 * 40.26912 * 9 8 7 36 36 H 1.08999 * 110.41180 * 277.82119 * 9 8 7 37 37 H 1.09000 * 110.32138 * 95.04641 * 10 9 8 38 38 H 1.09003 * 110.32046 * 217.14933 * 10 9 8 39 39 H 0.96701 * 113.99845 * 61.45719 * 12 11 10 40 40 H 0.96994 * 120.00031 * 179.97438 * 16 15 13 41 41 H 1.09004 * 110.40940 * 82.17346 * 21 8 7 42 42 H 1.08995 * 110.40669 * 319.73353 * 21 8 7 43 43 H 1.08000 * 120.09585 * 179.75017 * 22 6 5 44 44 H 1.07997 * 120.09240 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1937 1.2057 0.0000 4 6 3.5602 1.2255 0.0005 5 6 4.2710 0.0213 0.0016 6 6 5.7370 0.0085 0.0016 7 6 6.5224 1.2947 0.0011 8 7 6.5724 1.8385 1.3648 9 6 7.4268 0.9978 2.2423 10 6 7.8192 1.9282 3.4101 11 6 7.6895 3.3576 2.8448 12 8 6.7130 4.0961 3.5817 13 6 9.0213 4.0615 2.8908 14 1 9.4869 4.3966 1.9758 15 6 9.6452 4.2777 4.1012 16 7 9.0784 3.8693 5.2155 17 14 11.2956 5.1509 4.1584 18 1 11.0773 6.6137 4.2914 19 1 12.0758 4.6589 5.3221 20 1 12.0457 4.8742 2.9069 21 6 7.2298 3.1707 1.3830 22 6 6.3672 -1.1933 -0.0030 23 6 5.6082 -2.3837 0.0019 24 8 6.1858 -3.4558 0.0021 25 8 4.2664 -2.3639 0.0023 26 6 3.5786 -1.2022 0.0021 27 6 2.1894 -1.1984 -0.0005 28 1 -0.3635 -0.0003 1.0277 29 1 -0.3634 0.8902 -0.5136 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6442 2.1354 0.0004 32 1 4.0889 2.1673 0.0009 33 1 6.0400 2.0147 -0.6599 34 1 7.5359 1.1012 -0.3503 35 1 8.3154 0.6676 1.7042 36 1 6.8645 0.1403 2.6119 37 1 7.1380 1.7899 4.2497 38 1 8.8459 1.7338 3.7205 39 1 6.9274 4.2062 4.5181 40 1 9.5175 4.0212 6.0669 41 1 6.5190 3.9491 1.1054 42 1 8.0875 3.1804 0.7105 43 1 7.4463 -1.2390 -0.0072 44 1 1.6454 -2.1314 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829983577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:17:27 Heat of formation + Delta-G solvation = -75.486608 kcal Electronic energy + Delta-G solvation = -28140.562661 eV Core-core repulsion = 24216.310361 eV Total energy + Delta-G solvation = -3924.252300 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.94474 -39.19291 -38.63281 -37.33536 -36.04391 -34.16922 -32.17756 -32.00853 -30.83609 -30.10338 -28.05188 -27.39228 -26.34930 -24.24693 -24.16785 -22.73702 -21.91411 -20.34775 -19.53993 -18.93801 -18.28304 -17.32236 -17.03361 -16.77516 -15.61113 -15.33156 -15.14832 -14.93368 -14.82720 -14.45777 -14.26937 -14.10033 -14.01128 -13.44193 -13.40000 -13.06900 -12.77866 -12.57080 -12.44752 -12.40861 -12.01436 -11.83804 -11.56199 -11.37972 -11.35733 -11.20368 -11.10520 -10.64410 -10.61475 -10.46984 -10.24680 -10.19453 -9.92769 -9.22255 -8.94130 -8.64618 -8.43100 -8.19828 -8.02071 -6.26534 -4.35922 0.14077 0.94850 1.44350 2.35557 2.76622 3.18379 3.26136 3.28173 3.56146 4.03749 4.12419 4.24734 4.29939 4.53446 4.56391 4.76025 4.91572 4.96887 5.00784 5.13111 5.25069 5.28430 5.39355 5.48344 5.57591 5.59217 5.62957 5.77207 5.80058 5.87698 5.90931 5.97460 6.08444 6.19347 6.26675 6.32296 6.47025 6.48432 6.80502 6.94296 7.13725 7.20514 7.37161 7.41054 7.44088 7.50327 7.74022 8.11775 8.66964 9.33282 9.48879 10.80044 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.016744 B = 0.003210 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.808387 B = 8721.983395 C = 9777.774803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.033 4.033 3 C -0.146 4.146 4 C -0.030 4.030 5 C -0.145 4.145 6 C 0.058 3.942 7 C 0.066 3.934 8 N -0.501 5.501 9 C 0.030 3.970 10 C -0.119 4.119 11 C 0.255 3.745 12 O -0.586 6.586 13 C -0.540 4.540 14 H 0.060 0.940 15 C 0.071 3.929 16 N -0.893 5.893 17 Si 0.899 3.101 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.051 3.949 22 C -0.260 4.260 23 C 0.514 3.486 24 O -0.473 6.473 25 O -0.274 6.274 26 C 0.147 3.853 27 C -0.143 4.143 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.134 0.866 32 H 0.145 0.855 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.037 0.963 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.380 0.620 40 H 0.268 0.732 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.160 0.840 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.681 -5.693 -10.808 18.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.033 4.033 3 C -0.164 4.164 4 C -0.048 4.048 5 C -0.146 4.146 6 C 0.056 3.944 7 C -0.062 4.062 8 N -0.225 5.225 9 C -0.098 4.098 10 C -0.158 4.158 11 C 0.215 3.785 12 O -0.394 6.394 13 C -0.578 4.578 14 H 0.078 0.922 15 C -0.132 4.132 16 N -0.532 5.532 17 Si 0.726 3.274 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.076 4.076 22 C -0.281 4.281 23 C 0.364 3.636 24 O -0.362 6.362 25 O -0.186 6.186 26 C 0.102 3.898 27 C -0.162 4.162 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.152 0.848 32 H 0.163 0.837 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.230 0.770 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.067 0.933 43 H 0.178 0.822 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.313 -6.344 -11.019 19.144 hybrid contribution 2.332 0.370 0.458 2.405 sum -11.981 -5.974 -10.560 17.052 Atomic orbital electron populations 1.20885 0.90139 1.03341 1.03088 1.19909 0.96510 0.91947 0.94961 1.20843 0.94208 0.97928 1.03396 1.21029 0.93915 0.97168 0.92715 1.18975 0.92773 0.93239 1.09593 1.21539 0.91670 0.95715 0.85444 1.21386 0.98196 0.92463 0.94184 1.65526 1.48066 1.03718 1.05225 1.23230 0.94115 0.96713 0.95724 1.22859 1.01292 0.96395 0.95250 1.19179 0.86204 0.87541 0.85585 1.86119 1.49490 1.77343 1.26490 1.21686 1.04189 1.38646 0.93326 0.92188 1.24996 0.97939 0.94721 0.95527 1.69699 1.39398 1.46106 0.97982 0.86489 0.83247 0.79922 0.77725 1.20424 1.21071 1.19864 1.23124 0.96450 0.88979 0.99053 1.22417 1.02368 0.90957 1.12331 1.19182 0.78415 0.90815 0.75168 1.90960 1.64479 1.33338 1.47420 1.83508 1.23768 1.33593 1.77771 1.19065 0.91338 0.81971 0.97397 1.20318 0.89716 0.99301 1.06833 0.90299 0.90813 0.91069 0.84846 0.83742 0.88930 0.92457 0.94437 0.91851 0.92629 0.90910 0.77015 0.92244 0.90589 0.93305 0.82221 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 9.99 36.00 0.36 -0.33 16 2 C -0.03 -0.30 5.88 -104.55 -0.61 -0.91 16 3 C -0.15 -1.38 9.61 -39.96 -0.38 -1.77 16 4 C -0.03 -0.35 9.39 -39.56 -0.37 -0.72 16 5 C -0.14 -1.88 5.87 -105.04 -0.62 -2.49 16 6 C 0.06 0.78 5.13 -102.15 -0.52 0.26 16 7 C 0.07 0.89 4.34 -4.97 -0.02 0.87 16 8 N -0.50 -8.64 5.36 -231.41 -1.24 -9.88 16 9 C 0.03 0.55 5.83 -2.18 -0.01 0.54 16 10 C -0.12 -2.67 5.54 -25.35 -0.14 -2.81 16 11 C 0.26 6.01 1.05 -90.39 -0.10 5.92 16 12 O -0.59 -14.77 12.94 -35.23 -0.46 -15.23 16 13 C -0.54 -13.84 8.08 -34.44 -0.28 -14.12 16 14 H 0.06 1.52 7.59 -52.49 -0.40 1.13 16 15 C 0.07 1.81 5.02 -17.82 -0.09 1.72 16 16 N -0.89 -23.23 10.81 55.43 0.60 -22.63 16 17 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 C 0.05 1.00 5.76 -2.18 -0.01 0.98 16 22 C -0.26 -3.65 9.40 -39.37 -0.37 -4.02 16 23 C 0.51 8.14 7.89 31.85 0.25 8.39 16 24 O -0.47 -8.73 17.91 -19.58 -0.35 -9.08 16 25 O -0.27 -4.08 9.82 -20.66 -0.20 -4.29 16 26 C 0.15 1.91 6.76 -38.45 -0.26 1.65 16 27 C -0.14 -1.49 9.64 -39.45 -0.38 -1.87 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 30 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.14 1.60 6.78 -52.48 -0.36 1.24 16 33 H 0.09 1.07 7.16 -51.93 -0.37 0.70 16 34 H 0.06 0.74 7.76 -51.93 -0.40 0.34 16 35 H 0.04 0.66 7.82 -51.93 -0.41 0.26 16 36 H 0.06 1.15 8.12 -51.93 -0.42 0.73 16 37 H 0.05 1.30 7.98 -51.93 -0.41 0.89 16 38 H 0.07 1.76 7.25 -51.93 -0.38 1.39 16 39 H 0.38 9.80 7.32 45.56 0.33 10.13 16 40 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 41 H 0.08 1.47 8.08 -51.93 -0.42 1.05 16 42 H 0.05 0.93 7.57 -51.93 -0.39 0.53 16 43 H 0.16 2.07 8.05 -52.49 -0.42 1.65 16 44 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -29.13 363.10 -10.05 -39.19 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -5.29 Total: 10.09 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -3.56 Total: -8.71 kcal Atomic # 7 Polarization: -31.87 SS G_CDS: -0.64 Total: -32.51 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -1.01 Total: -28.59 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.13 -10.05 -39.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829983577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.301 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds