Wall clock time and date at job start Sat Apr 11 2020 02:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38759 * 119.66418 * 2 1 4 4 C 1.36663 * 120.49147 * 179.97438 * 3 2 1 5 5 C 1.39828 * 119.72619 * 359.97438 * 4 3 2 6 6 C 1.46609 * 121.05484 * 179.97438 * 5 4 3 7 7 C 1.50698 * 120.90808 * 0.02562 * 6 5 4 8 8 N 1.46904 * 109.47407 * 80.00324 * 7 6 5 9 9 C 1.48559 * 111.00066 * 69.86567 * 8 7 6 10 10 C 1.54387 * 104.58955 * 159.04379 * 9 8 7 11 11 C 1.54259 * 105.06271 * 336.15098 * 10 9 8 12 12 O 1.42894 * 110.32466 * 118.89659 * 11 10 9 13 13 C 1.50702 * 110.32122 * 241.00360 * 11 10 9 14 14 H 1.08000 * 120.00018 * 118.54543 * 13 11 10 15 15 C 1.37878 * 119.99808 * 298.54411 * 13 11 10 16 16 N 1.31514 * 120.00305 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99911 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46818 * 89.99867 * 17 15 13 19 19 H 1.48492 * 109.47149 * 210.00198 * 17 15 13 20 20 H 1.48501 * 109.47156 * 330.00335 * 17 15 13 21 21 C 1.48560 * 111.00239 * 185.29090 * 8 7 6 22 22 C 1.35705 * 118.17321 * 180.27289 * 6 5 4 23 23 C 1.41177 * 119.80369 * 359.55492 * 22 6 5 24 24 O 1.21778 * 119.16537 * 180.23630 * 23 22 6 25 25 O 1.34195 * 121.67687 * 0.43879 * 23 22 6 26 26 C 1.35003 * 121.47364 * 359.79994 * 25 23 22 27 27 C 1.37913 * 119.66100 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47734 * 269.98181 * 1 2 3 29 29 H 1.09004 * 109.47297 * 29.98138 * 1 2 3 30 30 H 1.09003 * 109.47562 * 149.98053 * 1 2 3 31 31 H 1.07993 * 119.75129 * 0.02562 * 3 2 1 32 32 H 1.08004 * 120.13524 * 180.02562 * 4 3 2 33 33 H 1.08996 * 109.47595 * 319.99405 * 7 6 5 34 34 H 1.09004 * 109.46561 * 199.99544 * 7 6 5 35 35 H 1.08999 * 110.40971 * 40.26912 * 9 8 7 36 36 H 1.08999 * 110.41180 * 277.82119 * 9 8 7 37 37 H 1.09000 * 110.32138 * 95.04641 * 10 9 8 38 38 H 1.09003 * 110.32046 * 217.14933 * 10 9 8 39 39 H 0.96701 * 113.99845 * 61.45719 * 12 11 10 40 40 H 0.96994 * 120.00031 * 179.97438 * 16 15 13 41 41 H 1.09004 * 110.40940 * 82.17346 * 21 8 7 42 42 H 1.08995 * 110.40669 * 319.73353 * 21 8 7 43 43 H 1.08000 * 120.09585 * 179.75017 * 22 6 5 44 44 H 1.07997 * 120.09240 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1937 1.2057 0.0000 4 6 3.5602 1.2255 0.0005 5 6 4.2710 0.0213 0.0016 6 6 5.7370 0.0085 0.0016 7 6 6.5224 1.2947 0.0011 8 7 6.5724 1.8385 1.3648 9 6 7.4268 0.9978 2.2423 10 6 7.8192 1.9282 3.4101 11 6 7.6895 3.3576 2.8448 12 8 6.7130 4.0961 3.5817 13 6 9.0213 4.0615 2.8908 14 1 9.4869 4.3966 1.9758 15 6 9.6452 4.2777 4.1012 16 7 9.0784 3.8693 5.2155 17 14 11.2956 5.1509 4.1584 18 1 11.0773 6.6137 4.2914 19 1 12.0758 4.6589 5.3221 20 1 12.0457 4.8742 2.9069 21 6 7.2298 3.1707 1.3830 22 6 6.3672 -1.1933 -0.0030 23 6 5.6082 -2.3837 0.0019 24 8 6.1858 -3.4558 0.0021 25 8 4.2664 -2.3639 0.0023 26 6 3.5786 -1.2022 0.0021 27 6 2.1894 -1.1984 -0.0005 28 1 -0.3635 -0.0003 1.0277 29 1 -0.3634 0.8902 -0.5136 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6442 2.1354 0.0004 32 1 4.0889 2.1673 0.0009 33 1 6.0400 2.0147 -0.6599 34 1 7.5359 1.1012 -0.3503 35 1 8.3154 0.6676 1.7042 36 1 6.8645 0.1403 2.6119 37 1 7.1380 1.7899 4.2497 38 1 8.8459 1.7338 3.7205 39 1 6.9274 4.2062 4.5181 40 1 9.5175 4.0212 6.0669 41 1 6.5190 3.9491 1.1054 42 1 8.0875 3.1804 0.7105 43 1 7.4463 -1.2390 -0.0072 44 1 1.6454 -2.1314 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829983577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:17:26 Heat of formation + Delta-G solvation = -93.238637 kcal Electronic energy + Delta-G solvation = -28141.332447 eV Core-core repulsion = 24216.310361 eV Total energy + Delta-G solvation = -3925.022086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.00515 -40.31799 -40.01630 -38.46276 -37.43287 -35.60645 -34.15007 -32.84128 -31.78198 -31.53939 -29.73502 -28.37181 -27.60253 -25.92060 -25.18357 -23.60687 -23.11945 -21.73476 -21.29820 -19.88049 -19.29407 -18.99111 -18.34370 -17.92414 -17.18162 -16.89560 -16.36018 -16.16179 -15.96074 -15.65422 -15.49960 -15.23832 -14.91242 -14.84449 -14.68511 -14.25820 -13.98550 -13.96050 -13.74577 -13.25585 -13.08194 -13.02327 -12.99160 -12.78329 -12.71219 -12.56093 -12.38573 -12.30157 -12.26068 -12.16765 -11.74138 -11.41819 -11.22513 -11.03429 -10.59006 -10.09952 -9.80077 -9.48113 -9.32252 -8.20788 -6.36757 -0.85663 0.03044 0.51257 1.30604 1.40692 1.43541 1.51531 1.71465 2.38257 2.64669 2.96694 3.04883 3.12325 3.20932 3.39096 3.84160 3.91459 3.96867 3.98325 4.09847 4.15181 4.24660 4.34684 4.38193 4.46875 4.51256 4.65520 4.71007 4.74050 4.86903 4.88672 4.89179 4.90050 5.06486 5.13915 5.19095 5.26082 5.34948 5.44946 5.49415 5.59375 5.65871 5.70245 5.83371 6.02170 6.05383 6.23430 6.31959 6.70952 7.35410 7.48597 8.84145 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.016744 B = 0.003210 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.808387 B = 8721.983395 C = 9777.774803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.022 4.022 3 C -0.141 4.141 4 C -0.038 4.038 5 C -0.165 4.165 6 C 0.071 3.929 7 C 0.066 3.934 8 N -0.500 5.500 9 C 0.040 3.960 10 C -0.112 4.112 11 C 0.237 3.763 12 O -0.594 6.594 13 C -0.559 4.559 14 H 0.058 0.942 15 C 0.029 3.971 16 N -0.912 5.912 17 Si 0.956 3.044 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.269 1.269 21 C 0.061 3.939 22 C -0.273 4.273 23 C 0.512 3.488 24 O -0.515 6.515 25 O -0.283 6.283 26 C 0.123 3.877 27 C -0.148 4.148 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.161 0.839 32 H 0.149 0.851 33 H 0.119 0.881 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.035 0.965 38 H 0.046 0.954 39 H 0.372 0.628 40 H 0.268 0.732 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.167 0.833 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.289 -4.693 -12.177 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.022 4.022 3 C -0.159 4.159 4 C -0.056 4.056 5 C -0.165 4.165 6 C 0.069 3.931 7 C -0.061 4.061 8 N -0.224 5.224 9 C -0.087 4.087 10 C -0.151 4.151 11 C 0.197 3.803 12 O -0.401 6.401 13 C -0.597 4.597 14 H 0.076 0.924 15 C -0.172 4.172 16 N -0.551 5.551 17 Si 0.782 3.218 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.194 1.194 21 C -0.066 4.066 22 C -0.293 4.293 23 C 0.365 3.635 24 O -0.407 6.407 25 O -0.195 6.195 26 C 0.079 3.921 27 C -0.166 4.166 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.179 0.821 32 H 0.166 0.834 33 H 0.137 0.863 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.221 0.779 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.075 0.925 43 H 0.184 0.816 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.946 -5.331 -12.407 20.896 hybrid contribution 2.646 0.131 0.887 2.793 sum -13.300 -5.200 -11.521 18.349 Atomic orbital electron populations 1.20995 0.87486 1.04876 1.04054 1.20330 0.98293 0.91071 0.92524 1.21229 0.93680 0.99336 1.01668 1.21173 0.94859 0.96573 0.93003 1.19100 0.92560 0.93925 1.10954 1.21566 0.92175 0.95229 0.84115 1.21487 0.99311 0.92944 0.92343 1.65429 1.47105 1.02578 1.07316 1.23071 0.94909 0.96016 0.94739 1.22647 0.99212 0.97163 0.96087 1.19471 0.85596 0.87440 0.87748 1.86112 1.50103 1.77840 1.26082 1.21996 1.05323 1.39040 0.93390 0.92361 1.25672 1.00803 0.95351 0.95358 1.69793 1.40404 1.46676 0.98241 0.85591 0.79785 0.78768 0.77663 1.20260 1.21039 1.19399 1.22944 0.96987 0.90336 0.96343 1.22375 1.02585 0.90566 1.13743 1.19388 0.78754 0.90851 0.74518 1.90925 1.65413 1.34530 1.49816 1.83451 1.23433 1.34957 1.77648 1.19475 0.92267 0.81427 0.98951 1.20657 0.88753 1.00838 1.06377 0.89376 0.89095 0.89857 0.82132 0.83371 0.86322 0.91257 0.93338 0.91419 0.94607 0.93477 0.77878 0.92303 0.90048 0.92532 0.81568 0.82674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 9.99 71.23 0.71 -0.19 16 2 C -0.02 -0.32 5.88 -19.82 -0.12 -0.44 16 3 C -0.14 -2.21 9.61 22.03 0.21 -2.00 16 4 C -0.04 -0.78 9.39 22.29 0.21 -0.57 16 5 C -0.16 -4.03 5.87 -20.14 -0.12 -4.15 16 6 C 0.07 1.81 5.13 -18.27 -0.09 1.72 16 7 C 0.07 1.64 4.34 85.56 0.37 2.01 16 8 N -0.50 -16.41 5.36 -886.03 -4.75 -21.16 16 9 C 0.04 1.48 5.83 86.45 0.50 1.98 16 10 C -0.11 -5.10 5.54 31.49 0.17 -4.93 16 11 C 0.24 11.18 1.05 -10.64 -0.01 11.17 16 12 O -0.59 -30.15 12.94 -148.98 -1.93 -32.08 16 13 C -0.56 -28.65 8.08 25.60 0.21 -28.44 16 14 H 0.06 2.93 7.59 -2.91 -0.02 2.91 16 15 C 0.03 1.48 5.02 84.65 0.43 1.90 16 16 N -0.91 -48.15 10.81 21.45 0.23 -47.92 16 17 Si 0.96 41.14 29.54 68.60 2.03 43.17 16 18 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 C 0.06 2.31 5.76 86.45 0.50 2.80 16 22 C -0.27 -7.59 9.40 22.40 0.21 -7.37 16 23 C 0.51 16.59 7.89 68.54 0.54 17.13 16 24 O -0.51 -19.72 17.91 19.02 0.34 -19.38 16 25 O -0.28 -8.52 9.82 15.16 0.15 -8.37 16 26 C 0.12 3.09 6.76 23.01 0.16 3.25 16 27 C -0.15 -2.80 9.64 22.36 0.22 -2.58 16 28 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.09 0.44 8.08 -2.38 -0.02 0.42 16 30 H 0.08 0.49 8.08 -2.39 -0.02 0.47 16 31 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 32 H 0.15 2.86 6.78 -2.91 -0.02 2.84 16 33 H 0.12 2.37 7.16 -2.39 -0.02 2.35 16 34 H 0.07 1.61 7.76 -2.38 -0.02 1.59 16 35 H 0.05 1.66 7.82 -2.39 -0.02 1.64 16 36 H 0.07 2.42 8.12 -2.39 -0.02 2.40 16 37 H 0.04 1.72 7.98 -2.39 -0.02 1.70 16 38 H 0.05 2.34 7.25 -2.39 -0.02 2.32 16 39 H 0.37 19.67 7.32 -74.06 -0.54 19.13 16 40 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 41 H 0.08 2.99 8.08 -2.39 -0.02 2.97 16 42 H 0.06 2.04 7.57 -2.39 -0.02 2.02 16 43 H 0.17 4.27 8.05 -2.91 -0.02 4.25 16 44 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -63.91 363.10 0.66 -63.26 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: 0.49 Total: 31.20 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 4.10 Total: -8.71 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: -4.52 Total: -69.08 kcal Atomic # 8 Polarization: -58.39 SS G_CDS: -1.44 Total: -59.83 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -63.91 0.66 -63.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829983577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.983 kcal (2) G-P(sol) polarization free energy of solvation -63.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds