Wall clock time and date at job start Sat Apr 11 2020 02:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38753 * 119.66907 * 2 1 4 4 C 1.36661 * 120.50037 * 180.02562 * 3 2 1 5 5 C 1.39830 * 119.71805 * 359.97438 * 4 3 2 6 6 C 1.46617 * 121.05615 * 179.97438 * 5 4 3 7 7 C 1.50700 * 120.91708 * 0.02900 * 6 5 4 8 8 N 1.46900 * 109.46737 * 284.76049 * 7 6 5 9 9 C 1.47444 * 111.00004 * 284.54757 * 8 7 6 10 10 C 1.54321 * 107.23113 * 236.74519 * 9 8 7 11 11 C 1.55135 * 103.01882 * 337.71569 * 10 9 8 12 12 O 1.42904 * 110.99328 * 277.55890 * 11 10 9 13 13 C 1.50705 * 110.98957 * 153.74765 * 11 10 9 14 14 H 1.08002 * 120.00079 * 238.42850 * 13 11 10 15 15 C 1.37874 * 120.00142 * 58.42847 * 13 11 10 16 16 N 1.31521 * 119.99764 * 355.33437 * 15 13 11 17 17 Si 1.86801 * 120.00256 * 175.33341 * 15 13 11 18 18 H 1.48493 * 109.47065 * 94.98874 * 17 15 13 19 19 H 1.48493 * 109.47194 * 214.99159 * 17 15 13 20 20 H 1.48506 * 109.47000 * 334.99053 * 17 15 13 21 21 C 1.47849 * 110.99981 * 163.70395 * 8 7 6 22 22 C 1.35715 * 118.17380 * 180.29593 * 6 5 4 23 23 C 1.41181 * 119.80004 * 359.52113 * 22 6 5 24 24 O 1.21780 * 119.16113 * 180.27543 * 23 22 6 25 25 O 1.34200 * 121.68125 * 0.46897 * 23 22 6 26 26 C 1.35009 * 121.46531 * 359.78136 * 25 23 22 27 27 C 1.37919 * 119.66180 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47058 * 89.99650 * 1 2 3 29 29 H 1.09004 * 109.47187 * 210.00359 * 1 2 3 30 30 H 1.08999 * 109.46570 * 329.99620 * 1 2 3 31 31 H 1.07997 * 119.74978 * 0.02562 * 3 2 1 32 32 H 1.07998 * 120.13888 * 180.02562 * 4 3 2 33 33 H 1.08995 * 109.47096 * 164.75821 * 7 6 5 34 34 H 1.08998 * 109.46976 * 44.75634 * 7 6 5 35 35 H 1.08994 * 109.88792 * 117.33703 * 9 8 7 36 36 H 1.08997 * 110.02011 * 356.22699 * 9 8 7 37 37 H 1.08996 * 110.70409 * 96.10296 * 10 9 8 38 38 H 1.08999 * 110.70394 * 219.33119 * 10 9 8 39 39 H 0.96701 * 114.00161 * 298.55466 * 12 11 10 40 40 H 0.96996 * 119.99388 * 179.97438 * 16 15 13 41 41 H 1.08996 * 110.37395 * 265.19410 * 21 8 7 42 42 H 1.09000 * 110.37101 * 27.42326 * 21 8 7 43 43 H 1.07992 * 120.09985 * 179.70352 * 22 6 5 44 44 H 1.08001 * 120.09454 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1938 1.2056 0.0000 4 6 3.5603 1.2255 -0.0005 5 6 4.2710 0.0212 -0.0005 6 6 5.7371 0.0083 -0.0016 7 6 6.5228 1.2943 -0.0022 8 7 6.4759 1.8961 -1.3414 9 6 7.3632 1.1780 -2.2748 10 6 8.3525 2.2121 -2.8521 11 6 7.6097 3.5585 -2.6475 12 8 6.6688 3.7890 -3.6982 13 6 8.5851 4.7022 -2.5389 14 1 8.5939 5.3223 -1.6548 15 6 9.4663 4.9568 -3.5683 16 7 9.5190 4.1478 -4.6040 17 14 10.5852 6.4506 -3.4921 18 1 11.9032 6.0539 -2.9347 19 1 10.7710 7.0002 -4.8590 20 1 9.9709 7.4853 -2.6218 21 6 6.8871 3.3156 -1.2991 22 6 6.3673 -1.1937 -0.0078 23 6 5.6081 -2.3840 -0.0026 24 8 6.1856 -3.4562 -0.0031 25 8 4.2663 -2.3641 -0.0010 26 6 3.5787 -1.2022 0.0001 27 6 2.1896 -1.1985 0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3632 0.8900 0.5139 31 1 1.6444 2.1354 0.0004 32 1 4.0890 2.1672 -0.0001 33 1 7.5585 1.0873 0.2672 34 1 6.0901 1.9847 0.7218 35 1 6.7755 0.7372 -3.0800 36 1 7.9095 0.3978 -1.7447 37 1 9.2899 2.2007 -2.2961 38 1 8.5293 2.0265 -3.9115 39 1 7.0678 3.8507 -4.5769 40 1 10.1387 4.3272 -5.3283 41 1 6.0131 3.9615 -1.2151 42 1 7.5676 3.4889 -0.4654 43 1 7.4462 -1.2395 -0.0136 44 1 1.6456 -2.1315 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829983578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:17:29 Heat of formation + Delta-G solvation = -92.551871 kcal Electronic energy + Delta-G solvation = -28146.649502 eV Core-core repulsion = 24221.657197 eV Total energy + Delta-G solvation = -3924.992305 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.99098 -40.33905 -40.00762 -38.44946 -37.36611 -35.53947 -34.20927 -32.82652 -31.73091 -31.43852 -29.89688 -28.33295 -27.61949 -25.99918 -25.16526 -23.59242 -23.08672 -21.51556 -21.41539 -19.85596 -19.30441 -18.97900 -18.32941 -17.90549 -17.02255 -16.84251 -16.37490 -16.31259 -16.00421 -15.72336 -15.63151 -15.18330 -14.86352 -14.84277 -14.41689 -14.18275 -13.97226 -13.95132 -13.61519 -13.34021 -13.15071 -13.05934 -12.99773 -12.80208 -12.71446 -12.64156 -12.48212 -12.26642 -12.24389 -12.17601 -11.67284 -11.39728 -11.22156 -10.99424 -10.64371 -10.05112 -9.78455 -9.34913 -9.25786 -8.19322 -6.35934 -0.83871 0.04269 0.52800 1.31694 1.39997 1.44243 1.52904 1.72716 2.38622 2.65965 2.97236 3.04719 3.14654 3.23473 3.41771 3.85059 3.91031 3.97583 4.00670 4.06931 4.19013 4.25586 4.35631 4.41900 4.42874 4.50632 4.65610 4.73979 4.77713 4.88714 4.89824 4.90317 4.92325 5.07790 5.10569 5.26441 5.27907 5.36902 5.49519 5.50446 5.59315 5.71269 5.81820 5.89291 6.05429 6.12116 6.21495 6.32919 6.70740 7.35649 7.41582 8.83989 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.016858 B = 0.003186 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.514643 B = 8785.136994 C = 9882.232853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.022 4.022 3 C -0.142 4.142 4 C -0.036 4.036 5 C -0.163 4.163 6 C 0.072 3.928 7 C 0.072 3.928 8 N -0.516 5.516 9 C 0.049 3.951 10 C -0.131 4.131 11 C 0.233 3.767 12 O -0.585 6.585 13 C -0.559 4.559 14 H 0.058 0.942 15 C 0.031 3.969 16 N -0.908 5.908 17 Si 0.955 3.045 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.070 3.930 22 C -0.275 4.275 23 C 0.513 3.487 24 O -0.515 6.515 25 O -0.283 6.283 26 C 0.122 3.878 27 C -0.148 4.148 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.160 0.840 32 H 0.147 0.853 33 H 0.067 0.933 34 H 0.117 0.883 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.043 0.957 38 H 0.056 0.944 39 H 0.368 0.632 40 H 0.266 0.734 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.167 0.833 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.657 -5.121 10.918 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.022 4.022 3 C -0.160 4.160 4 C -0.054 4.054 5 C -0.164 4.164 6 C 0.071 3.929 7 C -0.055 4.055 8 N -0.240 5.240 9 C -0.078 4.078 10 C -0.170 4.170 11 C 0.194 3.806 12 O -0.391 6.391 13 C -0.597 4.597 14 H 0.076 0.924 15 C -0.170 4.170 16 N -0.547 5.547 17 Si 0.781 3.219 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.194 1.194 21 C -0.057 4.057 22 C -0.295 4.295 23 C 0.365 3.635 24 O -0.408 6.408 25 O -0.195 6.195 26 C 0.078 3.922 27 C -0.166 4.166 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.178 0.822 32 H 0.165 0.835 33 H 0.085 0.915 34 H 0.135 0.865 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.215 0.785 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.184 0.816 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -16.346 -5.876 11.102 20.615 hybrid contribution 2.668 0.561 -0.685 2.812 sum -13.678 -5.315 10.416 17.995 Atomic orbital electron populations 1.20992 0.87494 1.04853 1.04045 1.20325 0.98277 0.91064 0.92570 1.21223 0.93688 0.99324 1.01768 1.21152 0.94800 0.96566 0.92859 1.19090 0.92567 0.93880 1.10853 1.21631 0.92204 0.95259 0.83842 1.21483 0.98758 0.92570 0.92733 1.63557 1.51606 1.02464 1.06395 1.22794 0.93309 0.95943 0.95785 1.23032 0.96896 0.96707 1.00399 1.19777 0.85288 0.90989 0.84586 1.86157 1.38518 1.95345 1.19083 1.21811 1.18422 1.15541 1.03920 0.92376 1.25667 0.97727 0.98532 0.95079 1.69943 1.38125 1.37312 1.09343 0.85597 0.78871 0.80033 0.77409 1.20439 1.20960 1.19406 1.22882 0.98616 0.87607 0.96610 1.22375 1.02549 0.90581 1.13969 1.19388 0.78760 0.90841 0.74490 1.90923 1.65432 1.34529 1.49885 1.83453 1.23425 1.34947 1.77663 1.19474 0.92265 0.81429 0.98994 1.20651 0.88751 1.00817 1.06424 0.89374 0.89861 0.89130 0.82199 0.83511 0.91521 0.86487 0.92543 0.92461 0.93814 0.92563 0.78501 0.92502 0.90404 0.92109 0.81598 0.82680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.99 71.24 0.71 -0.21 16 2 C -0.02 -0.33 5.88 -19.82 -0.12 -0.45 16 3 C -0.14 -2.27 9.61 22.02 0.21 -2.06 16 4 C -0.04 -0.74 9.41 22.29 0.21 -0.53 16 5 C -0.16 -4.05 5.87 -20.14 -0.12 -4.16 16 6 C 0.07 1.88 5.25 -18.26 -0.10 1.78 16 7 C 0.07 1.81 3.99 85.56 0.34 2.16 16 8 N -0.52 -16.88 5.11 -890.12 -4.55 -21.43 16 9 C 0.05 1.81 6.51 86.65 0.56 2.38 16 10 C -0.13 -5.82 5.17 31.77 0.16 -5.66 16 11 C 0.23 10.80 0.87 -10.16 -0.01 10.79 16 12 O -0.58 -28.86 13.17 -148.98 -1.96 -30.83 16 13 C -0.56 -28.33 8.28 25.60 0.21 -28.12 16 14 H 0.06 2.90 7.80 -2.91 -0.02 2.88 16 15 C 0.03 1.58 5.29 84.65 0.45 2.03 16 16 N -0.91 -47.45 10.76 21.45 0.23 -47.22 16 17 Si 0.95 40.79 29.54 68.60 2.03 42.82 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 21 C 0.07 2.59 5.81 86.77 0.50 3.10 16 22 C -0.27 -7.71 9.23 22.41 0.21 -7.50 16 23 C 0.51 16.68 7.89 68.54 0.54 17.22 16 24 O -0.52 -19.80 17.91 19.02 0.34 -19.46 16 25 O -0.28 -8.55 9.82 15.06 0.15 -8.41 16 26 C 0.12 3.10 6.76 23.00 0.16 3.26 16 27 C -0.15 -2.82 9.64 22.36 0.22 -2.61 16 28 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 0.49 8.08 -2.38 -0.02 0.48 16 30 H 0.09 0.46 8.08 -2.39 -0.02 0.44 16 31 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.15 2.93 6.90 -2.91 -0.02 2.91 16 33 H 0.07 1.62 7.63 -2.39 -0.02 1.60 16 34 H 0.12 2.40 7.30 -2.39 -0.02 2.38 16 35 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 36 H 0.06 1.89 7.03 -2.39 -0.02 1.87 16 37 H 0.04 2.01 8.03 -2.39 -0.02 1.99 16 38 H 0.06 2.75 7.34 -2.39 -0.02 2.74 16 39 H 0.37 18.69 7.99 -74.06 -0.59 18.10 16 40 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 41 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 42 H 0.06 2.13 7.70 -2.39 -0.02 2.11 16 43 H 0.17 4.29 8.02 -2.91 -0.02 4.27 16 44 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -62.97 363.83 0.83 -62.14 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: 0.44 Total: 30.96 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 4.15 Total: -8.59 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: -4.32 Total: -68.65 kcal Atomic # 8 Polarization: -57.22 SS G_CDS: -1.47 Total: -58.69 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -62.97 0.83 -62.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829983578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.407 kcal (2) G-P(sol) polarization free energy of solvation -62.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds