Wall clock time and date at job start Sat Apr 11 2020 02:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86802 * 119.99914 * 2 1 4 4 H 1.48498 * 109.47168 * 240.00286 * 3 2 1 5 5 H 1.48506 * 109.46951 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46931 * 120.00131 * 3 2 1 7 7 C 1.38629 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00269 * 179.97438 * 7 2 1 9 9 O 1.34801 * 119.99953 * 0.02562 * 7 2 1 10 10 C 1.35794 * 117.00313 * 185.06987 * 9 7 2 11 11 C 1.38720 * 120.08317 * 354.40795 * 10 9 7 12 12 C 1.38364 * 119.97940 * 180.29569 * 11 10 9 13 13 F 1.35098 * 119.91858 * 179.97438 * 12 11 10 14 14 C 1.38522 * 120.16003 * 359.97438 * 12 11 10 15 15 C 1.38220 * 120.17625 * 359.97438 * 14 12 11 16 16 C 1.38713 * 120.01474 * 0.02562 * 15 14 12 17 17 N 1.39929 * 120.08073 * 179.97438 * 16 15 14 18 18 C 1.46507 * 119.99805 * 0.02562 * 17 16 15 19 19 C 1.52996 * 109.47022 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.47527 * 295.00300 * 19 18 17 21 21 C 1.52999 * 109.47038 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.47127 * 60.00100 * 21 20 19 23 23 F 1.39902 * 109.47058 * 179.97438 * 22 21 20 24 24 F 1.39899 * 109.47064 * 60.00013 * 22 21 20 25 25 C 1.52997 * 109.47080 * 299.99874 * 22 21 20 26 26 C 1.52996 * 109.47188 * 60.00408 * 25 22 21 27 27 H 0.97003 * 120.00089 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.01238 * 0.25125 * 11 10 9 29 29 H 1.08000 * 119.91423 * 179.97438 * 14 12 11 30 30 H 1.07995 * 119.99346 * 180.02562 * 15 14 12 31 31 H 0.96996 * 120.00621 * 180.02562 * 17 16 15 32 32 H 1.09001 * 109.47229 * 300.00804 * 18 17 16 33 33 H 1.09003 * 109.46734 * 60.00195 * 18 17 16 34 34 H 1.09002 * 109.47099 * 55.01128 * 19 18 17 35 35 H 1.08998 * 109.47053 * 300.00036 * 20 19 18 36 36 H 1.08997 * 109.47078 * 59.99930 * 20 19 18 37 37 H 1.08998 * 109.47090 * 299.99844 * 21 20 19 38 38 H 1.08999 * 109.47174 * 180.02562 * 21 20 19 39 39 H 1.08994 * 109.47271 * 299.99746 * 25 22 21 40 40 H 1.09007 * 109.47039 * 180.02562 * 25 22 21 41 41 H 1.09003 * 109.46731 * 180.02562 * 26 25 22 42 42 H 1.08998 * 109.47290 * 59.99942 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1035 1.6965 -1.2125 5 1 1.2847 2.7465 0.0006 6 1 3.1035 1.6964 1.2125 7 6 2.0090 -1.2005 -0.0005 8 1 3.0890 -1.2005 -0.0010 9 8 1.3350 -2.3680 -0.0016 10 6 2.0704 -3.5046 0.1049 11 6 3.4561 -3.4400 0.0916 12 6 4.2033 -4.6000 0.1941 13 9 5.5527 -4.5358 0.1805 14 6 3.5711 -5.8271 0.3105 15 6 2.1908 -5.8989 0.3254 16 6 1.4346 -4.7405 0.2232 17 7 0.0372 -4.8116 0.2377 18 6 -0.6289 -6.1107 0.3614 19 6 -2.1455 -5.9091 0.3520 20 6 -2.5629 -5.1201 1.5946 21 6 -4.0796 -4.9191 1.5854 22 6 -4.7747 -6.2821 1.5894 23 9 -6.1616 -6.0983 1.5816 24 9 -4.4051 -6.9907 2.7377 25 6 -4.3572 -7.0711 0.3468 26 6 -2.8406 -7.2721 0.3560 27 1 -0.4850 0.8401 0.0004 28 1 3.9515 -2.4847 0.0007 29 1 4.1582 -6.7300 0.3898 30 1 1.7010 -6.8570 0.4167 31 1 -0.4905 -4.0010 0.1657 32 1 -0.3413 -6.7476 -0.4750 33 1 -0.3314 -6.5837 1.2973 34 1 -2.4330 -5.3569 -0.5427 35 1 -2.2754 -5.6724 2.4892 36 1 -2.0673 -4.1493 1.5920 37 1 -4.3675 -4.3670 0.6908 38 1 -4.3770 -4.3567 2.4704 39 1 -4.6452 -6.5191 -0.5478 40 1 -4.8528 -8.0420 0.3494 41 1 -2.5432 -7.8339 -0.5295 42 1 -2.5527 -7.8242 1.2506 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841695272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:17:50 Heat of formation + Delta-G solvation = -182.456748 kcal Electronic energy + Delta-G solvation = -28099.901354 eV Core-core repulsion = 23629.153740 eV Total energy + Delta-G solvation = -4470.747614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.96006 -49.62098 -47.96055 -40.89840 -39.42527 -38.08614 -35.81213 -34.24783 -32.15878 -31.98049 -30.88899 -28.99954 -27.28716 -26.05365 -24.13736 -23.65722 -22.72259 -22.07852 -20.93086 -19.97832 -19.25459 -18.37743 -17.91590 -17.56162 -17.32127 -17.16886 -16.90369 -16.45109 -15.98716 -15.74546 -15.68136 -15.35945 -15.23722 -15.07630 -14.94277 -14.56374 -14.53573 -14.31967 -14.17271 -13.78927 -13.57644 -13.41890 -13.31441 -13.19523 -13.08831 -12.83130 -12.59646 -12.35799 -12.22731 -12.11406 -12.04855 -11.67932 -11.55403 -11.43536 -11.06228 -10.77754 -10.62662 -9.40598 -8.45621 -7.97717 -6.07167 0.51828 0.64690 1.35915 1.44200 1.49327 2.17069 2.64654 2.80027 2.82111 3.13008 3.14493 3.32142 3.37026 3.41548 3.67602 3.85633 3.96017 4.02741 4.05834 4.16501 4.28482 4.31757 4.41733 4.53722 4.66159 4.69798 4.74527 4.83588 4.87152 4.91229 4.94203 5.05161 5.05975 5.11456 5.15085 5.27620 5.36319 5.42711 5.47112 5.50080 5.98231 6.07395 6.60385 6.88579 7.00671 7.77206 8.75734 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.010715 B = 0.003465 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.446025 B = 8077.748269 C =10369.710544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.012 4.012 3 Si 1.007 2.993 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.409 4.409 8 H 0.091 0.909 9 O -0.214 6.214 10 C 0.079 3.921 11 C -0.248 4.248 12 C 0.061 3.939 13 F -0.157 7.157 14 C -0.165 4.165 15 C -0.136 4.136 16 C 0.155 3.845 17 N -0.746 5.746 18 C 0.134 3.866 19 C -0.095 4.095 20 C -0.112 4.112 21 C -0.157 4.157 22 C 0.282 3.718 23 F -0.215 7.215 24 F -0.210 7.210 25 C -0.151 4.151 26 C -0.103 4.103 27 H 0.272 0.728 28 H 0.120 0.880 29 H 0.156 0.844 30 H 0.164 0.836 31 H 0.397 0.603 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.927 -15.321 0.406 16.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.211 4.211 3 Si 0.827 3.173 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.188 1.188 7 C -0.485 4.485 8 H 0.108 0.892 9 O -0.121 6.121 10 C 0.027 3.973 11 C -0.270 4.270 12 C 0.040 3.960 13 F -0.136 7.136 14 C -0.184 4.184 15 C -0.160 4.160 16 C 0.052 3.948 17 N -0.378 5.378 18 C 0.011 3.989 19 C -0.114 4.114 20 C -0.149 4.149 21 C -0.195 4.195 22 C 0.246 3.754 23 F -0.196 7.196 24 F -0.191 7.191 25 C -0.189 4.189 26 C -0.141 4.141 27 H 0.081 0.919 28 H 0.138 0.862 29 H 0.173 0.827 30 H 0.181 0.819 31 H 0.231 0.769 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.395 -15.348 0.434 17.042 hybrid contribution 0.392 1.715 0.269 1.779 sum -7.003 -13.633 0.703 15.343 Atomic orbital electron populations 1.70119 1.07383 1.28603 1.48658 1.26282 0.96806 1.01905 0.96089 0.84809 0.77578 0.75319 0.79594 1.18652 1.19434 1.18804 1.21585 0.92154 0.81644 1.53145 0.89175 1.83846 1.34467 1.11660 1.82104 1.19086 0.90022 0.87734 1.00505 1.20856 0.93741 0.98606 1.13757 1.17357 0.76019 0.94616 1.08005 1.91375 1.30048 1.97410 1.94764 1.20808 0.94950 0.95760 1.06905 1.20405 0.92301 0.96485 1.06775 1.17411 0.85280 0.90555 1.01550 1.44606 1.01550 1.09211 1.82387 1.21452 0.91180 0.84593 1.01691 1.21393 0.93931 0.97626 0.98467 1.21500 0.93261 1.01114 0.99070 1.22504 0.96842 0.94505 1.05651 1.21440 0.75455 0.93565 0.84956 1.92978 1.33447 1.96236 1.96970 1.92964 1.91309 1.80753 1.54114 1.22520 0.98701 1.02132 0.95538 1.21460 0.91904 0.95778 1.04912 0.91946 0.86228 0.82678 0.81862 0.76852 0.90700 0.91735 0.90079 0.91084 0.92170 0.88021 0.90139 0.87553 0.88103 0.87853 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.60 13.67 21.61 0.30 -52.30 16 2 C -0.01 -0.67 5.49 84.82 0.47 -0.21 16 3 Si 1.01 42.35 29.55 68.60 2.03 44.38 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.41 -23.08 9.49 67.91 0.64 -22.43 16 8 H 0.09 4.86 5.21 -2.91 -0.02 4.84 16 9 O -0.21 -11.88 9.00 -22.94 -0.21 -12.09 16 10 C 0.08 3.74 6.67 22.69 0.15 3.89 16 11 C -0.25 -11.25 9.14 22.41 0.20 -11.04 16 12 C 0.06 2.38 7.29 22.37 0.16 2.54 16 13 F -0.16 -5.96 17.26 44.97 0.78 -5.18 16 14 C -0.16 -5.20 10.02 22.33 0.22 -4.98 16 15 C -0.14 -4.14 9.31 22.38 0.21 -3.93 16 16 C 0.16 5.87 6.67 38.26 0.26 6.12 16 17 N -0.75 -24.36 5.46 -338.85 -1.85 -26.21 16 18 C 0.13 2.89 4.31 86.38 0.37 3.26 16 19 C -0.10 -1.76 2.23 -10.79 -0.02 -1.79 16 20 C -0.11 -2.47 4.96 30.59 0.15 -2.32 16 21 C -0.16 -3.21 5.45 30.59 0.17 -3.05 16 22 C 0.28 5.52 2.10 30.59 0.06 5.59 16 23 F -0.22 -4.89 17.06 44.97 0.77 -4.12 16 24 F -0.21 -4.78 16.02 44.97 0.72 -4.06 16 25 C -0.15 -2.07 5.45 30.59 0.17 -1.90 16 26 C -0.10 -1.34 5.08 30.60 0.16 -1.18 16 27 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.12 5.69 5.64 -2.91 -0.02 5.68 16 29 H 0.16 3.78 8.06 -2.91 -0.02 3.75 16 30 H 0.16 3.60 6.73 -2.91 -0.02 3.58 16 31 H 0.40 14.99 7.02 -92.71 -0.65 14.34 16 32 H 0.07 1.37 7.95 -2.39 -0.02 1.35 16 33 H 0.06 1.30 7.95 -2.39 -0.02 1.28 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 1.59 7.80 -2.39 -0.02 1.57 16 36 H 0.06 1.67 7.18 -2.39 -0.02 1.65 16 37 H 0.10 1.93 8.14 -2.39 -0.02 1.92 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.08 1.03 7.80 -2.39 -0.02 1.01 16 Total: -1.00 -65.97 351.52 6.32 -59.65 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: 0.42 Total: 31.35 kcal Atomic # 6 Polarization: -34.79 SS G_CDS: 3.37 Total: -31.43 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -1.55 Total: -78.51 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -0.21 Total: -12.09 kcal Atomic # 9 Polarization: -15.63 SS G_CDS: 2.26 Total: -13.36 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -65.97 6.32 -59.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841695272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.804 kcal (2) G-P(sol) polarization free energy of solvation -65.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds