Wall clock time and date at job start Sat Apr 11 2020 02:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34354 * 125.41624 * 2 1 4 4 C 1.46900 * 106.35436 * 180.02562 * 3 2 1 5 5 C 1.46459 * 127.06238 * 180.02562 * 4 3 2 6 6 O 1.21344 * 120.00057 * 180.02562 * 5 4 3 7 7 C 1.50702 * 119.99493 * 0.02562 * 5 4 3 8 8 O 1.42909 * 109.46488 * 180.02562 * 7 5 4 9 9 C 1.35899 * 116.99662 * 180.02562 * 8 7 5 10 10 C 1.38828 * 120.01965 * 359.97438 * 9 8 7 11 11 C 1.38194 * 120.07533 * 180.02562 * 10 9 8 12 12 C 1.38151 * 120.12750 * 359.97438 * 11 10 9 13 13 C 1.38894 * 120.03774 * 0.05358 * 12 11 10 14 14 O 1.35750 * 120.03605 * 179.97438 * 13 12 11 15 15 C 1.34834 * 117.00083 * 174.40230 * 14 13 12 16 16 H 1.08007 * 119.99854 * 5.05907 * 15 14 13 17 17 C 1.38652 * 120.00470 * 185.06512 * 15 14 13 18 18 N 1.31560 * 119.99622 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00291 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46993 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47486 * 119.99528 * 19 17 15 22 22 H 1.48503 * 109.47031 * 239.99630 * 19 17 15 23 23 C 1.38566 * 120.01914 * 180.02562 * 9 8 7 24 24 C 1.38214 * 105.87726 * 0.26042 * 4 3 2 25 25 C 1.50695 * 125.92401 * 179.70359 * 24 4 3 26 26 N 1.34496 * 108.15744 * 359.57823 * 24 4 3 27 27 C 1.46497 * 124.77820 * 180.17044 * 26 24 4 28 28 H 1.08995 * 109.46843 * 89.97128 * 1 2 3 29 29 H 1.09004 * 109.46621 * 209.96870 * 1 2 3 30 30 H 1.08995 * 109.46843 * 329.96775 * 1 2 3 31 31 H 1.07995 * 126.82298 * 0.04527 * 3 2 1 32 32 H 1.08997 * 109.46954 * 60.00496 * 7 5 4 33 33 H 1.08995 * 109.47557 * 299.99725 * 7 5 4 34 34 H 1.07992 * 119.95953 * 0.02562 * 10 9 8 35 35 H 1.08004 * 119.93248 * 180.02562 * 11 10 9 36 36 H 1.07994 * 119.98031 * 180.02562 * 12 11 10 37 37 H 0.97005 * 119.99865 * 180.02562 * 18 17 15 38 38 H 1.08001 * 120.06652 * 359.69339 * 23 9 8 39 39 H 1.09006 * 109.47525 * 90.02609 * 25 24 4 40 40 H 1.09003 * 109.47753 * 210.02898 * 25 24 4 41 41 H 1.09007 * 109.47515 * 330.02832 * 25 24 4 42 42 H 1.09007 * 109.47141 * 270.33629 * 27 26 24 43 43 H 1.09001 * 109.47335 * 30.33446 * 27 26 24 44 44 H 1.08997 * 109.47401 * 150.33772 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2857 1.0949 0.0000 4 6 3.6741 0.6152 -0.0006 5 6 4.8901 1.4315 -0.0003 6 8 5.9796 0.8972 -0.0014 7 6 4.7881 2.9351 0.0013 8 8 6.1002 3.5014 0.0007 9 6 6.1867 4.8576 0.0025 10 6 5.0313 5.6273 0.0043 11 6 5.1180 7.0065 0.0057 12 6 6.3540 7.6237 0.0058 13 6 7.5131 6.8585 0.0034 14 8 8.7277 7.4649 0.0029 15 6 9.8096 6.6685 0.1177 16 1 9.6918 5.5949 0.1224 17 6 11.0734 7.2277 0.2299 18 7 11.2169 8.5354 0.2239 19 14 12.5723 6.1243 0.3883 20 1 12.1445 4.7024 0.3685 21 1 13.4967 6.3793 -0.7455 22 1 13.2672 6.4140 1.6683 23 6 7.4282 5.4731 0.0015 24 6 3.5973 -0.7648 -0.0070 25 6 4.7666 -1.7154 -0.0163 26 7 2.2981 -1.1123 -0.0006 27 6 1.8017 -2.4907 -0.0008 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3633 -0.8903 0.5134 30 1 -0.3633 0.8897 0.5143 31 1 1.9562 2.1234 0.0007 32 1 4.2513 3.2618 0.8919 33 1 4.2505 3.2638 -0.8881 34 1 4.0638 5.1477 0.0047 35 1 4.2176 7.6031 0.0075 36 1 6.4189 8.7016 0.0072 37 1 12.1011 8.9267 0.3020 38 1 8.3281 4.8759 0.0043 39 1 5.0525 -1.9499 1.0091 40 1 4.4854 -2.6325 -0.5339 41 1 5.6081 -1.2513 -0.5309 42 1 1.6787 -2.8324 -1.0286 43 1 2.5159 -3.1341 0.5130 44 1 0.8412 -2.5311 0.5129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842108334.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:17:53 Heat of formation + Delta-G solvation = -28.520524 kcal Electronic energy + Delta-G solvation = -26553.978366 eV Core-core repulsion = 22631.762668 eV Total energy + Delta-G solvation = -3922.215698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.73242 -39.73402 -38.73084 -37.67456 -35.50483 -33.38176 -32.93978 -32.19874 -30.32714 -29.52615 -28.70898 -28.48568 -26.43690 -25.27721 -25.03828 -22.29880 -21.79682 -21.07405 -19.78579 -18.65976 -18.12920 -17.56406 -16.72292 -16.26846 -15.78489 -15.76527 -15.42921 -15.10875 -14.97595 -14.33961 -14.15060 -14.08011 -13.92999 -13.66328 -13.52725 -13.45630 -13.18454 -13.01903 -12.88686 -12.82475 -12.60435 -12.45432 -12.25504 -12.06298 -11.69633 -11.55953 -11.53900 -11.01325 -10.90839 -10.50276 -10.33139 -10.25529 -9.59474 -9.33895 -8.92307 -8.78011 -8.28721 -7.64501 -7.19891 -6.39874 -3.98686 1.24583 1.99279 2.28000 2.38518 2.39283 3.09532 3.19535 3.21640 3.28167 3.36010 4.04062 4.23128 4.28032 4.44076 4.54837 4.58143 4.61766 4.71273 4.86913 4.93012 5.12575 5.14531 5.19754 5.25748 5.30108 5.31844 5.33969 5.36565 5.45302 5.57453 5.62131 5.70787 5.83224 5.98596 6.18027 6.34109 6.42864 6.49834 6.72602 6.76538 6.87427 7.08278 7.15950 7.27461 7.48909 7.59720 7.74531 8.06402 8.11089 9.06404 9.73967 10.77892 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.018216 B = 0.002355 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.733899 B =11885.063610 C =13385.505044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.004 3.996 3 C -0.151 4.151 4 C -0.259 4.259 5 C 0.426 3.574 6 O -0.448 6.448 7 C 0.025 3.975 8 O -0.302 6.302 9 C 0.165 3.835 10 C -0.299 4.299 11 C -0.044 4.044 12 C -0.221 4.221 13 C 0.184 3.816 14 O -0.171 6.171 15 C -0.391 4.391 16 H 0.096 0.904 17 C 0.040 3.960 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.262 4.262 24 C 0.110 3.890 25 C -0.097 4.097 26 N -0.438 5.438 27 C 0.064 3.936 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.150 0.850 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.269 0.731 38 H 0.136 0.864 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.905 -21.001 -0.275 31.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 C -0.175 4.175 4 C -0.267 4.267 5 C 0.304 3.696 6 O -0.323 6.323 7 C -0.051 4.051 8 O -0.215 6.215 9 C 0.121 3.879 10 C -0.318 4.318 11 C -0.062 4.062 12 C -0.240 4.240 13 C 0.129 3.871 14 O -0.074 6.074 15 C -0.467 4.467 16 H 0.113 0.887 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.189 1.189 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.282 4.282 24 C -0.007 4.007 25 C -0.154 4.154 26 N -0.115 5.115 27 C -0.078 4.078 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.167 0.833 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.079 0.921 38 H 0.153 0.847 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.120 0.880 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -22.057 -21.340 -0.276 30.692 hybrid contribution 0.267 -0.461 0.082 0.540 sum -21.790 -21.802 -0.194 30.824 Atomic orbital electron populations 1.20340 0.87754 1.03284 1.02708 1.20207 0.93619 0.85429 1.11069 1.21865 0.90626 0.97830 1.07145 1.20719 0.93908 0.92000 1.20091 1.21130 0.87267 0.89075 0.72100 1.90538 1.29829 1.75241 1.36667 1.22805 0.85893 0.92898 1.03499 1.86120 1.27406 1.18883 1.89107 1.18690 0.94080 0.80574 0.94577 1.20634 0.96081 0.94755 1.20353 1.20390 0.96158 0.93453 0.96225 1.20153 0.90207 0.99412 1.14234 1.19026 0.87178 0.89930 0.90969 1.83998 1.10375 1.35182 1.77858 1.21459 0.82820 0.90568 1.51841 0.88712 1.25299 0.98229 0.96505 0.96431 1.70057 1.24003 1.09688 1.46013 0.85640 0.80054 0.79581 0.78209 1.18860 1.20140 1.20137 1.20338 0.96030 0.94321 1.17514 1.20822 0.84617 0.94216 1.01071 1.20609 0.94625 0.96583 1.03594 1.43470 1.05199 1.06612 1.56236 1.22115 1.01598 0.80421 1.03647 0.90983 0.91884 0.89895 0.83277 0.89137 0.89158 0.87043 0.86731 0.86373 0.92089 0.84680 0.90165 0.91661 0.88033 0.90535 0.89503 0.89427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.05 36.01 0.36 -0.03 16 2 C 0.00 0.03 6.84 -81.89 -0.56 -0.53 16 3 C -0.15 -1.49 10.58 -37.45 -0.40 -1.88 16 4 C -0.26 -3.18 6.29 -103.09 -0.65 -3.83 16 5 C 0.43 6.39 7.20 -31.00 -0.22 6.16 16 6 O -0.45 -8.10 15.04 -14.40 -0.22 -8.32 16 7 C 0.03 0.37 4.78 36.01 0.17 0.55 16 8 O -0.30 -6.01 9.67 -39.33 -0.38 -6.39 16 9 C 0.17 3.49 6.68 -39.24 -0.26 3.22 16 10 C -0.30 -5.44 9.04 -39.38 -0.36 -5.79 16 11 C -0.04 -0.81 10.03 -39.63 -0.40 -1.20 16 12 C -0.22 -4.82 9.99 -39.37 -0.39 -5.22 16 13 C 0.18 4.67 6.64 -39.13 -0.26 4.41 16 14 O -0.17 -5.05 9.76 0.04 0.00 -5.05 16 15 C -0.39 -11.39 9.49 30.89 0.29 -11.09 16 16 H 0.10 2.63 5.20 -52.48 -0.27 2.36 16 17 C 0.04 1.12 5.49 -17.51 -0.10 1.03 16 18 N -0.86 -25.84 13.67 55.48 0.76 -25.08 16 19 Si 0.94 21.45 29.55 -169.99 -5.02 16.43 16 20 H -0.26 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 C -0.26 -6.34 9.11 -39.25 -0.36 -6.70 16 24 C 0.11 1.16 6.94 -81.44 -0.56 0.59 16 25 C -0.10 -0.87 9.27 36.00 0.33 -0.53 16 26 N -0.44 -3.56 3.08 -114.93 -0.35 -3.91 16 27 C 0.06 0.25 10.38 59.85 0.62 0.87 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.21 6.92 -51.93 -0.36 -0.15 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.09 1.15 7.66 -51.93 -0.40 0.75 16 33 H 0.09 1.14 7.66 -51.93 -0.40 0.75 16 34 H 0.11 1.62 6.29 -52.49 -0.33 1.29 16 35 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 36 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 37 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.14 3.40 5.64 -52.49 -0.30 3.11 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.40 7.60 -51.93 -0.39 0.01 16 41 H 0.10 1.13 6.53 -51.92 -0.34 0.79 16 42 H 0.08 0.22 8.14 -51.92 -0.42 -0.20 16 43 H 0.09 0.25 7.51 -51.93 -0.39 -0.14 16 44 H 0.09 0.20 6.88 -51.93 -0.36 -0.16 16 LS Contribution 373.81 15.07 5.63 5.63 Total: -1.00 -36.16 373.81 -7.94 -44.11 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -5.63 Total: 2.56 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -2.73 Total: -19.98 kcal Atomic # 7 Polarization: -29.40 SS G_CDS: 0.40 Total: -29.00 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.60 Total: -19.76 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.16 -7.94 -44.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842108334.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.587 kcal (2) G-P(sol) polarization free energy of solvation -36.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds