Wall clock time and date at job start Sat Apr 11 2020 02:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34354 * 125.41624 * 2 1 4 4 C 1.46900 * 106.35436 * 180.02562 * 3 2 1 5 5 C 1.46459 * 127.06238 * 180.02562 * 4 3 2 6 6 O 1.21344 * 120.00057 * 180.02562 * 5 4 3 7 7 C 1.50702 * 119.99493 * 0.02562 * 5 4 3 8 8 O 1.42909 * 109.46488 * 180.02562 * 7 5 4 9 9 C 1.35899 * 116.99662 * 180.02562 * 8 7 5 10 10 C 1.38828 * 120.01965 * 359.97438 * 9 8 7 11 11 C 1.38194 * 120.07533 * 180.02562 * 10 9 8 12 12 C 1.38151 * 120.12750 * 359.97438 * 11 10 9 13 13 C 1.38894 * 120.03774 * 0.05358 * 12 11 10 14 14 O 1.35750 * 120.03605 * 179.97438 * 13 12 11 15 15 C 1.34834 * 117.00083 * 174.40230 * 14 13 12 16 16 H 1.08007 * 119.99854 * 5.05907 * 15 14 13 17 17 C 1.38652 * 120.00470 * 185.06512 * 15 14 13 18 18 N 1.31560 * 119.99622 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00291 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46993 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47486 * 119.99528 * 19 17 15 22 22 H 1.48503 * 109.47031 * 239.99630 * 19 17 15 23 23 C 1.38566 * 120.01914 * 180.02562 * 9 8 7 24 24 C 1.38214 * 105.87726 * 0.26042 * 4 3 2 25 25 C 1.50695 * 125.92401 * 179.70359 * 24 4 3 26 26 N 1.34496 * 108.15744 * 359.57823 * 24 4 3 27 27 C 1.46497 * 124.77820 * 180.17044 * 26 24 4 28 28 H 1.08995 * 109.46843 * 89.97128 * 1 2 3 29 29 H 1.09004 * 109.46621 * 209.96870 * 1 2 3 30 30 H 1.08995 * 109.46843 * 329.96775 * 1 2 3 31 31 H 1.07995 * 126.82298 * 0.04527 * 3 2 1 32 32 H 1.08997 * 109.46954 * 60.00496 * 7 5 4 33 33 H 1.08995 * 109.47557 * 299.99725 * 7 5 4 34 34 H 1.07992 * 119.95953 * 0.02562 * 10 9 8 35 35 H 1.08004 * 119.93248 * 180.02562 * 11 10 9 36 36 H 1.07994 * 119.98031 * 180.02562 * 12 11 10 37 37 H 0.97005 * 119.99865 * 180.02562 * 18 17 15 38 38 H 1.08001 * 120.06652 * 359.69339 * 23 9 8 39 39 H 1.09006 * 109.47525 * 90.02609 * 25 24 4 40 40 H 1.09003 * 109.47753 * 210.02898 * 25 24 4 41 41 H 1.09007 * 109.47515 * 330.02832 * 25 24 4 42 42 H 1.09007 * 109.47141 * 270.33629 * 27 26 24 43 43 H 1.09001 * 109.47335 * 30.33446 * 27 26 24 44 44 H 1.08997 * 109.47401 * 150.33772 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2857 1.0949 0.0000 4 6 3.6741 0.6152 -0.0006 5 6 4.8901 1.4315 -0.0003 6 8 5.9796 0.8972 -0.0014 7 6 4.7881 2.9351 0.0013 8 8 6.1002 3.5014 0.0007 9 6 6.1867 4.8576 0.0025 10 6 5.0313 5.6273 0.0043 11 6 5.1180 7.0065 0.0057 12 6 6.3540 7.6237 0.0058 13 6 7.5131 6.8585 0.0034 14 8 8.7277 7.4649 0.0029 15 6 9.8096 6.6685 0.1177 16 1 9.6918 5.5949 0.1224 17 6 11.0734 7.2277 0.2299 18 7 11.2169 8.5354 0.2239 19 14 12.5723 6.1243 0.3883 20 1 12.1445 4.7024 0.3685 21 1 13.4967 6.3793 -0.7455 22 1 13.2672 6.4140 1.6683 23 6 7.4282 5.4731 0.0015 24 6 3.5973 -0.7648 -0.0070 25 6 4.7666 -1.7154 -0.0163 26 7 2.2981 -1.1123 -0.0006 27 6 1.8017 -2.4907 -0.0008 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3633 -0.8903 0.5134 30 1 -0.3633 0.8897 0.5143 31 1 1.9562 2.1234 0.0007 32 1 4.2513 3.2618 0.8919 33 1 4.2505 3.2638 -0.8881 34 1 4.0638 5.1477 0.0047 35 1 4.2176 7.6031 0.0075 36 1 6.4189 8.7016 0.0072 37 1 12.1011 8.9267 0.3020 38 1 8.3281 4.8759 0.0043 39 1 5.0525 -1.9499 1.0091 40 1 4.4854 -2.6325 -0.5339 41 1 5.6081 -1.2513 -0.5309 42 1 1.6787 -2.8324 -1.0286 43 1 2.5159 -3.1341 0.5130 44 1 0.8412 -2.5311 0.5129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842108334.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:17:53 Heat of formation + Delta-G solvation = -50.309652 kcal Electronic energy + Delta-G solvation = -26554.923213 eV Core-core repulsion = 22631.762668 eV Total energy + Delta-G solvation = -3923.160545 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.41595 -41.29411 -40.23373 -39.24051 -37.21905 -34.29565 -33.98288 -33.58008 -31.76596 -30.41137 -30.19030 -29.69397 -27.36204 -27.13275 -25.73571 -23.57626 -23.33136 -22.39490 -20.72335 -19.90458 -19.76457 -19.09396 -17.63029 -17.38519 -17.26923 -16.82356 -16.75955 -16.63065 -16.09578 -15.85596 -15.72613 -15.57866 -14.92464 -14.80621 -14.61715 -14.42216 -14.10610 -14.07722 -13.89986 -13.80237 -13.50405 -13.42432 -13.19533 -13.09717 -12.99835 -12.70752 -12.60639 -12.56309 -12.35422 -12.17490 -12.07028 -11.79592 -11.40769 -10.81181 -10.68229 -9.62308 -9.39934 -8.98604 -8.95848 -8.50908 -6.19457 0.29303 0.57932 0.67503 1.32540 1.34039 1.40386 1.50968 1.75900 2.10132 2.16882 2.17192 2.78864 3.12571 3.27038 3.50439 3.73716 3.84428 3.96701 4.02304 4.09058 4.18348 4.21274 4.29311 4.36332 4.42204 4.45741 4.54114 4.58111 4.60948 4.67476 4.71690 4.79615 4.84989 4.90843 5.00567 5.02497 5.09606 5.17230 5.28523 5.41668 5.61087 5.65551 5.78751 5.92360 6.00659 6.08396 6.29295 6.50518 6.69089 6.94012 7.70983 8.71852 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.018216 B = 0.002355 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.733899 B =11885.063610 C =13385.505044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.008 3.992 3 C -0.167 4.167 4 C -0.294 4.294 5 C 0.424 3.576 6 O -0.498 6.498 7 C 0.017 3.983 8 O -0.328 6.328 9 C 0.163 3.837 10 C -0.270 4.270 11 C -0.024 4.024 12 C -0.234 4.234 13 C 0.150 3.850 14 O -0.221 6.221 15 C -0.416 4.416 16 H 0.092 0.908 17 C -0.017 4.017 18 N -0.914 5.914 19 Si 1.016 2.984 20 H -0.262 1.262 21 H -0.262 1.262 22 H -0.262 1.262 23 C -0.288 4.288 24 C 0.102 3.898 25 C -0.094 4.094 26 N -0.434 5.434 27 C 0.053 3.947 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.167 0.833 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.164 0.836 35 H 0.170 0.830 36 H 0.123 0.877 37 H 0.275 0.725 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.471 -23.160 -0.156 35.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 C -0.190 4.190 4 C -0.302 4.302 5 C 0.306 3.694 6 O -0.377 6.377 7 C -0.058 4.058 8 O -0.242 6.242 9 C 0.118 3.882 10 C -0.289 4.289 11 C -0.042 4.042 12 C -0.253 4.253 13 C 0.098 3.902 14 O -0.127 6.127 15 C -0.492 4.492 16 H 0.110 0.890 17 C -0.215 4.215 18 N -0.552 5.552 19 Si 0.835 3.165 20 H -0.186 1.186 21 H -0.187 1.187 22 H -0.187 1.187 23 C -0.308 4.308 24 C -0.018 4.018 25 C -0.152 4.152 26 N -0.109 5.109 27 C -0.087 4.087 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.185 0.815 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.182 0.818 35 H 0.188 0.812 36 H 0.141 0.859 37 H 0.084 0.916 38 H 0.126 0.874 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.115 0.885 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -26.718 -23.527 -0.160 35.601 hybrid contribution 1.220 0.000 0.029 1.221 sum -25.498 -23.528 -0.131 34.695 Atomic orbital electron populations 1.20461 0.84956 1.04672 1.03769 1.20812 0.95258 0.84963 1.08925 1.22138 0.89419 0.99401 1.07995 1.20679 0.93880 0.92835 1.22780 1.21525 0.87697 0.89428 0.70754 1.90526 1.31600 1.75909 1.39677 1.23241 0.83882 0.92777 1.05931 1.86102 1.31060 1.18213 1.88810 1.18757 0.93832 0.81616 0.94005 1.21236 0.97033 0.94654 1.15967 1.20992 0.96389 0.93974 0.92859 1.20503 0.90507 0.99793 1.14501 1.19590 0.87211 0.90956 0.92396 1.83952 1.11620 1.36232 1.80911 1.21785 0.83780 0.90751 1.52907 0.89027 1.26517 1.01118 0.98208 0.95680 1.70170 1.25099 1.11654 1.48276 0.84580 0.75657 0.77278 0.78996 1.18572 1.18691 1.18707 1.20312 0.96943 0.94099 1.19421 1.21011 0.86078 0.94057 1.00620 1.20567 0.93473 0.97326 1.03796 1.43783 1.04284 1.08371 1.54484 1.22482 1.02858 0.78247 1.05111 0.89954 0.90130 0.88947 0.81541 0.86408 0.86414 0.81834 0.81233 0.85925 0.91596 0.87421 0.89854 0.88750 0.90836 0.89138 0.88481 0.87203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.05 71.24 0.72 0.31 16 2 C 0.01 0.10 6.84 40.95 0.28 0.38 16 3 C -0.17 -2.82 10.58 23.65 0.25 -2.57 16 4 C -0.29 -6.90 6.29 -18.87 -0.12 -7.02 16 5 C 0.42 12.72 7.20 27.83 0.20 12.92 16 6 O -0.50 -18.95 15.04 15.80 0.24 -18.71 16 7 C 0.02 0.46 4.78 71.24 0.34 0.80 16 8 O -0.33 -13.06 9.67 -73.38 -0.71 -13.77 16 9 C 0.16 6.78 6.68 22.49 0.15 6.93 16 10 C -0.27 -8.74 9.04 22.40 0.20 -8.54 16 11 C -0.02 -0.80 10.03 22.24 0.22 -0.58 16 12 C -0.23 -10.15 9.99 22.41 0.22 -9.93 16 13 C 0.15 8.00 6.64 22.56 0.15 8.15 16 14 O -0.22 -14.01 9.76 -22.79 -0.22 -14.24 16 15 C -0.42 -26.06 9.49 67.92 0.64 -25.42 16 16 H 0.09 5.55 5.20 -2.91 -0.02 5.54 16 17 C -0.02 -1.02 5.49 84.83 0.47 -0.56 16 18 N -0.91 -57.73 13.67 21.61 0.30 -57.43 16 19 Si 1.02 46.06 29.55 68.60 2.03 48.08 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 21 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 22 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 23 C -0.29 -14.66 9.11 22.48 0.20 -14.45 16 24 C 0.10 2.02 6.94 42.14 0.29 2.31 16 25 C -0.09 -1.65 9.27 71.23 0.66 -0.99 16 26 N -0.43 -5.78 3.08 -517.53 -1.59 -7.37 16 27 C 0.05 0.22 10.38 127.77 1.33 1.54 16 28 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.08 0.14 6.92 -2.39 -0.02 0.13 16 30 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 32 H 0.12 2.58 7.66 -2.39 -0.02 2.56 16 33 H 0.12 2.57 7.66 -2.39 -0.02 2.55 16 34 H 0.16 3.64 6.29 -2.91 -0.02 3.62 16 35 H 0.17 3.80 8.06 -2.91 -0.02 3.78 16 36 H 0.12 5.12 8.06 -2.91 -0.02 5.10 16 37 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 38 H 0.11 5.95 5.64 -2.91 -0.02 5.93 16 39 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.09 1.01 7.60 -2.39 -0.02 0.99 16 41 H 0.07 1.74 6.53 -2.38 -0.02 1.72 16 42 H 0.09 0.17 8.14 -2.38 -0.02 0.15 16 43 H 0.10 0.23 7.51 -2.39 -0.02 0.21 16 44 H 0.11 -0.01 6.88 -2.39 -0.02 -0.03 16 Total: -1.00 -88.09 373.81 7.28 -80.81 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 1.03 Total: 19.33 kcal Atomic # 6 Polarization: -42.91 SS G_CDS: 6.21 Total: -36.70 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: -1.30 Total: -64.81 kcal Atomic # 8 Polarization: -46.02 SS G_CDS: -0.69 Total: -46.72 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -88.09 7.28 -80.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842108334.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.503 kcal (2) G-P(sol) polarization free energy of solvation -88.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds