Wall clock time and date at job start Sat Apr 11 2020 02:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35677 * 116.99874 * 2 1 4 4 N 1.32271 * 119.68477 * 0.24758 * 3 2 1 5 5 C 1.31939 * 121.64344 * 180.28416 * 4 3 2 6 6 C 1.50703 * 119.57869 * 179.74737 * 5 4 3 7 7 C 1.38079 * 120.83791 * 359.73191 * 5 4 3 8 8 C 1.38789 * 119.28844 * 359.97438 * 7 5 4 9 9 C 1.50696 * 120.76068 * 179.97438 * 8 7 5 10 10 C 1.38425 * 118.48073 * 0.02562 * 8 7 5 11 11 C 1.50706 * 120.44095 * 179.97438 * 10 8 7 12 12 O 1.42898 * 109.47074 * 89.99629 * 11 10 8 13 13 C 1.35899 * 117.00227 * 180.02562 * 12 11 10 14 14 C 1.38828 * 120.01770 * 359.97296 * 13 12 11 15 15 C 1.38190 * 120.08193 * 180.02562 * 14 13 12 16 16 C 1.38146 * 120.12428 * 0.02562 * 15 14 13 17 17 C 1.38902 * 120.04270 * 0.02562 * 16 15 14 18 18 O 1.35746 * 120.04312 * 179.97438 * 17 16 15 19 19 C 1.34831 * 116.99925 * 174.48458 * 18 17 16 20 20 H 1.08005 * 120.00300 * 5.04372 * 19 18 17 21 21 C 1.38656 * 119.99919 * 185.05336 * 19 18 17 22 22 N 1.31561 * 119.99879 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00065 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47091 * 90.00091 * 23 21 19 25 25 H 1.48495 * 109.47077 * 210.00690 * 23 21 19 26 26 H 1.48500 * 109.46817 * 330.00313 * 23 21 19 27 27 C 1.38574 * 120.02517 * 179.97438 * 13 12 11 28 28 H 1.08999 * 109.46948 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46614 * 299.99483 * 1 2 3 30 30 H 1.08998 * 109.47117 * 59.99597 * 1 2 3 31 31 H 1.08994 * 109.47508 * 269.98100 * 6 5 4 32 32 H 1.08999 * 109.47315 * 29.98692 * 6 5 4 33 33 H 1.09002 * 109.47070 * 149.98017 * 6 5 4 34 34 H 1.07999 * 120.35949 * 180.02562 * 7 5 4 35 35 H 1.09008 * 109.47331 * 270.02135 * 9 8 7 36 36 H 1.08999 * 109.47548 * 30.02268 * 9 8 7 37 37 H 1.08997 * 109.47061 * 150.02550 * 9 8 7 38 38 H 1.08995 * 109.46740 * 329.99710 * 11 10 8 39 39 H 1.08993 * 109.46783 * 209.99525 * 11 10 8 40 40 H 1.08001 * 119.95863 * 0.02562 * 14 13 12 41 41 H 1.07996 * 119.93648 * 179.97438 * 15 14 13 42 42 H 1.08002 * 119.98378 * 180.02562 * 16 15 14 43 43 H 0.96995 * 119.99406 * 180.02562 * 22 21 19 44 44 H 1.07994 * 120.05841 * 0.27872 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3185 2.3142 0.0050 5 6 1.8769 3.5096 -0.0004 6 6 1.0043 4.7383 -0.0001 7 6 3.2506 3.6491 -0.0060 8 6 4.0484 2.5134 -0.0053 9 6 5.5510 2.6271 -0.0118 10 6 3.4322 1.2739 0.0004 11 6 4.2558 0.0118 0.0008 12 8 4.5212 -0.3834 1.3481 13 6 5.2586 -1.5109 1.5266 14 6 5.7168 -2.2225 0.4261 15 6 6.4663 -3.3694 0.6060 16 6 6.7616 -3.8118 1.8810 17 6 6.3049 -3.1044 2.9857 18 8 6.5946 -3.5394 4.2385 19 6 6.2202 -2.7473 5.2634 20 1 5.6427 -1.8547 5.0730 21 6 6.5766 -3.0785 6.5617 22 7 6.2109 -2.3059 7.5618 23 14 7.5751 -4.6226 6.8911 24 1 9.0228 -4.2959 6.8413 25 1 7.2337 -5.1556 8.2345 26 1 7.2622 -5.6438 5.8594 27 6 5.5537 -1.9510 2.8070 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 0.7900 5.0321 -1.0277 32 1 0.0702 4.5205 0.5178 33 1 1.5214 5.5511 0.5098 34 1 3.6995 4.6314 -0.0099 35 1 5.9092 2.6514 -1.0411 36 1 5.8484 3.5435 0.4980 37 1 5.9826 1.7687 0.5028 38 1 5.1977 0.1925 -0.5171 39 1 3.7071 -0.7802 -0.5088 40 1 5.4872 -1.8793 -0.5718 41 1 6.8212 -3.9214 -0.2517 42 1 7.3479 -4.7083 2.0190 43 1 6.4606 -2.5375 8.4699 44 1 5.1943 -1.4012 3.6642 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842110717.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:17:55 Heat of formation + Delta-G solvation = -64.413902 kcal Electronic energy + Delta-G solvation = -27291.501528 eV Core-core repulsion = 23367.729376 eV Total energy + Delta-G solvation = -3923.772152 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.03856 -41.18701 -39.88181 -39.18256 -37.46196 -35.53455 -34.45707 -33.19873 -31.59299 -30.60508 -30.11597 -28.73668 -28.20001 -27.28115 -26.06984 -23.69512 -23.53027 -22.67338 -21.68503 -19.90772 -19.78281 -18.97914 -18.34317 -17.59677 -17.26871 -17.01271 -16.83856 -16.46698 -16.30621 -15.65793 -15.59633 -15.37805 -15.22053 -15.02737 -14.81001 -14.43274 -14.19835 -14.15058 -13.83861 -13.65937 -13.51118 -13.27570 -13.17839 -13.10053 -12.80840 -12.69599 -12.67329 -12.49024 -12.13556 -12.03534 -11.96523 -11.75659 -11.44350 -10.90817 -10.71398 -10.51000 -9.47299 -9.44002 -9.00958 -8.51836 -6.26704 -0.10678 0.20121 0.55071 0.62881 1.31140 1.36529 1.52835 2.03044 2.17883 2.28037 2.74092 2.76650 3.02383 3.11216 3.15372 3.60462 3.73580 3.76907 3.93611 4.03841 4.22884 4.26614 4.32676 4.35074 4.35473 4.42283 4.48742 4.58108 4.60419 4.63102 4.69811 4.73308 4.77992 4.79308 4.91571 4.96415 5.00307 5.19637 5.27352 5.35295 5.40750 5.51135 5.57274 5.73284 5.79826 6.07058 6.15207 6.54088 6.77444 6.81225 7.52089 8.60124 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.014573 B = 0.002817 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.898241 B = 9937.721855 C =10369.543559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.322 6.322 3 C 0.329 3.671 4 N -0.563 5.563 5 C 0.164 3.836 6 C -0.101 4.101 7 C -0.214 4.214 8 C 0.013 3.987 9 C -0.122 4.122 10 C -0.202 4.202 11 C 0.118 3.882 12 O -0.332 6.332 13 C 0.165 3.835 14 C -0.266 4.266 15 C -0.026 4.026 16 C -0.224 4.224 17 C 0.158 3.842 18 O -0.235 6.235 19 C -0.404 4.404 20 H 0.073 0.927 21 C 0.010 3.990 22 N -0.924 5.924 23 Si 0.976 3.024 24 H -0.262 1.262 25 H -0.266 1.266 26 H -0.259 1.259 27 C -0.280 4.280 28 H 0.117 0.883 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.173 0.827 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.154 0.846 41 H 0.171 0.829 42 H 0.137 0.863 43 H 0.286 0.714 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.151 11.278 -22.219 25.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.229 6.229 3 C 0.151 3.849 4 N -0.289 5.289 5 C 0.028 3.972 6 C -0.158 4.158 7 C -0.233 4.233 8 C 0.006 3.994 9 C -0.178 4.178 10 C -0.205 4.205 11 C 0.043 3.957 12 O -0.246 6.246 13 C 0.120 3.880 14 C -0.285 4.285 15 C -0.044 4.044 16 C -0.243 4.243 17 C 0.108 3.892 18 O -0.142 6.142 19 C -0.480 4.480 20 H 0.090 0.910 21 C -0.189 4.189 22 N -0.564 5.564 23 Si 0.798 3.202 24 H -0.187 1.187 25 H -0.191 1.191 26 H -0.184 1.184 27 C -0.301 4.301 28 H 0.135 0.865 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.190 0.810 35 H 0.125 0.875 36 H 0.113 0.887 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.172 0.828 41 H 0.189 0.811 42 H 0.155 0.845 43 H 0.096 0.904 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.953 10.905 -21.769 25.321 hybrid contribution 0.416 -0.194 0.876 0.989 sum -6.537 10.711 -20.893 24.372 Atomic orbital electron populations 1.23042 0.75755 1.04469 1.02328 1.86258 1.24533 1.24719 1.87385 1.19803 0.89100 0.85098 0.90941 1.67228 1.40916 0.98789 1.21962 1.21690 0.93168 0.92272 0.90048 1.20860 0.98703 0.91652 1.04546 1.22049 0.93436 1.00321 1.07524 1.20440 0.98382 0.90899 0.89673 1.20993 0.87999 1.04191 1.04611 1.19545 0.90946 0.95961 1.14011 1.21368 0.99107 0.93556 0.81624 1.86121 1.67857 1.40104 1.30565 1.18721 0.90198 0.85830 0.93269 1.21221 1.09139 1.00591 0.97563 1.21005 0.93370 0.94007 0.95990 1.20534 1.09332 1.04072 0.90392 1.19326 0.92500 0.91900 0.85480 1.83528 1.73079 1.45601 1.11963 1.20676 1.35337 1.06740 0.85221 0.90963 1.25372 0.98096 1.02122 0.93266 1.69749 1.46652 1.39677 1.00314 0.85145 0.78772 0.78218 0.78112 1.18692 1.19092 1.18356 1.20345 1.11379 1.02288 0.96045 0.86507 0.93008 0.91472 0.88346 0.90893 0.88050 0.81001 0.87501 0.88702 0.92096 0.88791 0.90681 0.82842 0.81143 0.84530 0.90446 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.84 10.38 113.37 1.18 2.01 16 2 O -0.32 -9.53 9.54 -89.95 -0.86 -10.39 16 3 C 0.33 9.74 7.47 84.78 0.63 10.38 16 4 N -0.56 -14.98 9.13 -296.99 -2.71 -17.69 16 5 C 0.16 3.41 6.78 42.51 0.29 3.70 16 6 C -0.10 -1.23 10.17 71.24 0.72 -0.51 16 7 C -0.21 -3.99 9.44 22.36 0.21 -3.78 16 8 C 0.01 0.30 5.91 -19.69 -0.12 0.18 16 9 C -0.12 -2.11 9.28 71.23 0.66 -1.45 16 10 C -0.20 -5.66 5.54 -19.66 -0.11 -5.77 16 11 C 0.12 3.36 3.90 71.24 0.28 3.64 16 12 O -0.33 -12.83 10.12 -92.41 -0.93 -13.77 16 13 C 0.17 6.69 6.68 22.49 0.15 6.84 16 14 C -0.27 -8.44 9.04 22.40 0.20 -8.24 16 15 C -0.03 -0.78 10.03 22.24 0.22 -0.56 16 16 C -0.22 -8.64 9.99 22.41 0.22 -8.42 16 17 C 0.16 7.78 6.65 22.56 0.15 7.93 16 18 O -0.23 -13.22 8.58 -22.71 -0.19 -13.42 16 19 C -0.40 -24.97 9.95 67.92 0.68 -24.30 16 20 H 0.07 4.83 5.44 -2.91 -0.02 4.81 16 21 C 0.01 0.59 5.49 84.83 0.47 1.05 16 22 N -0.92 -57.01 13.96 21.61 0.30 -56.71 16 23 Si 0.98 46.22 28.62 68.60 1.96 48.19 16 24 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 27 C -0.28 -13.90 9.10 22.49 0.20 -13.69 16 28 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.05 1.18 8.10 -2.38 -0.02 1.16 16 30 H 0.07 1.28 8.11 -2.39 -0.02 1.27 16 31 H 0.10 0.87 8.14 -2.39 -0.02 0.86 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.10 0.79 8.08 -2.39 -0.02 0.77 16 34 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 35 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.09 1.32 8.10 -2.39 -0.02 1.30 16 37 H 0.06 1.34 6.82 -2.39 -0.02 1.33 16 38 H 0.09 2.14 6.32 -2.39 -0.02 2.13 16 39 H 0.08 2.06 7.06 -2.39 -0.02 2.05 16 40 H 0.15 3.67 6.29 -2.91 -0.02 3.65 16 41 H 0.17 3.43 8.06 -2.91 -0.02 3.41 16 42 H 0.14 4.71 8.06 -2.91 -0.02 4.69 16 43 H 0.29 16.06 8.31 -92.71 -0.77 15.29 16 44 H 0.10 5.66 5.64 -2.91 -0.02 5.64 16 Total: -1.00 -78.59 372.07 4.64 -73.95 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 1.03 Total: 20.82 kcal Atomic # 6 Polarization: -37.03 SS G_CDS: 6.04 Total: -30.99 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -2.41 Total: -74.39 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -1.99 Total: -37.58 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.96 Total: 48.19 kcal Total: -78.59 4.64 -73.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842110717.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.540 kcal (2) G-P(sol) polarization free energy of solvation -78.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds