Wall clock time and date at job start Sat Apr 11 2020 02:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86804 * 119.99597 * 2 1 4 4 H 1.48501 * 109.46832 * 269.99707 * 3 2 1 5 5 H 1.48505 * 109.47017 * 29.99691 * 3 2 1 6 6 H 1.48497 * 109.46924 * 149.99842 * 3 2 1 7 7 C 1.38625 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99522 * 180.02562 * 7 2 1 9 9 O 1.34797 * 120.00130 * 0.02562 * 7 2 1 10 10 C 1.35805 * 116.99757 * 185.06287 * 9 7 2 11 11 C 1.38713 * 120.08717 * 354.40283 * 10 9 7 12 12 C 1.38363 * 119.98204 * 180.02562 * 11 10 9 13 13 F 1.35100 * 119.92108 * 180.02562 * 12 11 10 14 14 C 1.38529 * 120.15656 * 359.97438 * 12 11 10 15 15 C 1.38214 * 120.17609 * 359.73020 * 14 12 11 16 16 C 1.38722 * 120.01757 * 0.54432 * 15 14 12 17 17 N 1.39924 * 120.08330 * 179.72640 * 16 15 14 18 18 C 1.46500 * 119.99662 * 359.72695 * 17 16 15 19 19 C 1.53004 * 109.47062 * 180.02562 * 18 17 16 20 20 H 1.08999 * 109.46994 * 54.99865 * 19 18 17 21 21 C 1.53004 * 109.46829 * 295.00036 * 19 18 17 22 22 C 1.53004 * 109.46829 * 180.02562 * 21 19 18 23 23 C 1.53006 * 109.47158 * 59.99768 * 22 21 19 24 24 C 1.52998 * 109.47290 * 300.00340 * 23 22 21 25 25 C 1.52994 * 109.47330 * 59.99816 * 24 23 22 26 26 F 1.39895 * 109.47171 * 180.02562 * 25 24 23 27 27 F 1.39900 * 109.47500 * 60.00157 * 25 24 23 28 28 H 0.96993 * 120.00251 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.01442 * 0.02562 * 11 10 9 30 30 H 1.07993 * 119.90921 * 179.97438 * 14 12 11 31 31 H 1.08006 * 119.99575 * 180.27867 * 15 14 12 32 32 H 0.96991 * 120.00370 * 179.45161 * 17 16 15 33 33 H 1.09000 * 109.47619 * 300.00206 * 18 17 16 34 34 H 1.08999 * 109.47091 * 60.00096 * 18 17 16 35 35 H 1.08999 * 109.47194 * 299.99707 * 21 19 18 36 36 H 1.08995 * 109.47134 * 60.00519 * 21 19 18 37 37 H 1.09007 * 109.46849 * 300.00142 * 22 21 19 38 38 H 1.08995 * 109.47154 * 180.02562 * 22 21 19 39 39 H 1.08999 * 109.46945 * 179.97438 * 23 22 21 40 40 H 1.08994 * 109.46749 * 60.00365 * 23 22 21 41 41 H 1.08999 * 109.46875 * 299.99947 * 24 23 22 42 42 H 1.09001 * 109.47212 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5472 1.4403 0.7001 7 6 2.0090 -1.2005 0.0005 8 1 3.0890 -1.2004 0.0010 9 8 1.3350 -2.3679 0.0005 10 6 2.0706 -3.5044 0.1079 11 6 3.4562 -3.4399 0.0943 12 6 4.2035 -4.5992 0.2033 13 9 5.5529 -4.5348 0.1905 14 6 3.5713 -5.8257 0.3265 15 6 2.1911 -5.8970 0.3469 16 6 1.4347 -4.7398 0.2324 17 7 0.0374 -4.8109 0.2471 18 6 -0.6286 -6.1093 0.3775 19 6 -2.1453 -5.9081 0.3657 20 1 -2.4321 -5.3607 -0.5322 21 6 -2.5638 -5.1123 1.6037 22 6 -4.0806 -4.9116 1.5921 23 6 -4.7755 -6.2747 1.6029 24 6 -4.3569 -7.0705 0.3650 25 6 -2.8402 -7.2712 0.3766 26 9 -2.4574 -7.9982 -0.7556 27 9 -2.4714 -7.9734 1.5290 28 1 -0.4850 0.8400 -0.0004 29 1 3.9516 -2.4850 -0.0013 30 1 4.1585 -6.7281 0.4109 31 1 1.7013 -6.8543 0.4477 32 1 -0.4904 -4.0004 0.1750 33 1 -0.3410 -6.7505 -0.4557 34 1 -0.3311 -6.5776 1.3158 35 1 -2.2769 -5.6597 2.5015 36 1 -2.0684 -4.1415 1.5961 37 1 -4.3678 -4.3645 0.6942 38 1 -4.3787 -4.3444 2.4738 39 1 -5.8560 -6.1317 1.5952 40 1 -4.4882 -6.8218 2.5008 41 1 -4.6441 -6.5233 -0.5328 42 1 -4.8523 -8.0413 0.3725 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849314705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:18:09 Heat of formation + Delta-G solvation = -164.822354 kcal Electronic energy + Delta-G solvation = -28557.698403 eV Core-core repulsion = 24087.715474 eV Total energy + Delta-G solvation = -4469.982929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.08341 -48.05514 -47.03040 -39.29174 -38.19176 -36.55452 -34.89643 -32.33831 -31.64406 -30.25200 -29.27322 -27.78890 -25.41430 -25.22800 -22.97435 -22.34945 -21.34109 -20.82291 -20.16357 -18.19391 -17.81284 -17.36525 -16.79051 -16.65879 -15.91040 -15.57426 -15.14708 -15.03476 -14.80615 -14.67817 -14.23784 -14.04731 -13.94267 -13.81921 -13.56704 -13.41956 -13.38807 -13.32255 -13.12415 -12.65060 -12.31355 -12.22518 -12.04756 -11.94096 -11.73752 -11.44234 -11.39828 -11.21667 -10.91249 -10.79970 -10.68802 -10.55195 -10.39849 -10.23694 -9.60223 -9.26044 -8.87607 -7.75669 -6.51770 -6.47093 -4.05976 2.11006 2.22537 3.10565 3.12463 3.16749 3.49552 3.80315 3.92441 4.00511 4.16082 4.34568 4.45525 4.66427 4.80839 4.87836 4.95811 5.00007 5.05949 5.06998 5.14521 5.27299 5.40293 5.45749 5.54765 5.58547 5.70196 5.75234 5.82025 5.83860 5.91575 5.97922 6.08860 6.11414 6.21927 6.40938 6.57720 6.80245 7.01809 7.08601 7.23153 7.58970 7.89334 7.99784 8.35642 8.95974 9.61549 10.66809 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.010870 B = 0.003901 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.307800 B = 7175.723189 C = 9392.731661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.041 3.959 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.386 4.386 8 H 0.091 0.909 9 O -0.177 6.177 10 C 0.122 3.878 11 C -0.240 4.240 12 C 0.087 3.913 13 F -0.157 7.157 14 C -0.194 4.194 15 C -0.144 4.144 16 C 0.152 3.848 17 N -0.742 5.742 18 C 0.136 3.864 19 C -0.135 4.135 20 H 0.106 0.894 21 C -0.116 4.116 22 C -0.125 4.125 23 C -0.119 4.119 24 C -0.157 4.157 25 C 0.298 3.702 26 F -0.201 7.201 27 F -0.197 7.197 28 H 0.269 0.731 29 H 0.138 0.862 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.409 0.591 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.968 -11.533 2.058 14.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.163 4.163 3 Si 0.764 3.236 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.462 4.462 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.067 3.933 11 C -0.262 4.262 12 C 0.066 3.934 13 F -0.136 7.136 14 C -0.215 4.215 15 C -0.168 4.168 16 C 0.052 3.948 17 N -0.378 5.378 18 C 0.010 3.990 19 C -0.155 4.155 20 H 0.124 0.876 21 C -0.154 4.154 22 C -0.162 4.162 23 C -0.157 4.157 24 C -0.195 4.195 25 C 0.261 3.739 26 F -0.182 7.182 27 F -0.178 7.178 28 H 0.079 0.921 29 H 0.156 0.844 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.246 0.754 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.113 0.887 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.385 -11.519 2.054 15.000 hybrid contribution 0.717 0.925 -0.116 1.176 sum -8.668 -10.595 1.939 13.825 Atomic orbital electron populations 1.70011 1.05840 1.27641 1.46508 1.25221 0.95867 0.98664 0.96572 0.85727 0.79021 0.80087 0.78754 1.19896 1.20285 1.19156 1.21286 0.91846 0.80606 1.52457 0.89126 1.83882 1.33668 1.11074 1.79499 1.18574 0.89422 0.87151 0.98139 1.20793 0.93454 0.98227 1.13686 1.17239 0.75892 0.94287 1.06006 1.91379 1.30259 1.97380 1.94613 1.20303 0.94369 0.95624 1.11164 1.19959 0.92618 0.95831 1.08375 1.17054 0.83541 0.91166 1.03085 1.44197 1.02565 1.07337 1.83670 1.21101 0.89312 0.87265 1.01291 1.22342 0.96342 0.94040 1.02744 0.87571 1.21614 0.95995 1.01405 0.96362 1.21625 0.94915 0.96610 1.03083 1.21533 1.00869 0.96198 0.97053 1.22512 0.91834 1.03224 1.01890 1.21000 0.95232 0.86271 0.71407 1.93008 1.92860 1.80109 1.52189 1.92984 1.93169 1.81119 1.50554 0.92098 0.84420 0.86495 0.86168 0.75447 0.92222 0.92169 0.90831 0.89424 0.91242 0.90877 0.90656 0.90948 0.88719 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.91 13.67 55.48 0.76 -23.15 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.12 29.55 -169.99 -5.02 15.10 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.39 -10.39 9.49 30.88 0.29 -10.09 16 8 H 0.09 2.32 5.21 -52.49 -0.27 2.05 16 9 O -0.18 -4.70 9.00 -0.03 0.00 -4.70 16 10 C 0.12 2.85 6.67 -38.94 -0.26 2.59 16 11 C -0.24 -5.39 9.14 -39.36 -0.36 -5.75 16 12 C 0.09 1.77 7.29 -39.43 -0.29 1.49 16 13 F -0.16 -3.13 17.26 2.25 0.04 -3.09 16 14 C -0.19 -3.57 10.02 -39.48 -0.40 -3.96 16 15 C -0.14 -2.60 9.31 -39.41 -0.37 -2.97 16 16 C 0.15 3.08 6.67 -83.52 -0.56 2.52 16 17 N -0.74 -13.11 5.46 -58.45 -0.32 -13.43 16 18 C 0.14 1.92 4.06 -4.04 -0.02 1.91 16 19 C -0.14 -1.60 1.88 -90.61 -0.17 -1.77 16 20 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 21 C -0.12 -1.33 4.96 -26.73 -0.13 -1.46 16 22 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 23 C -0.12 -0.94 5.80 -26.73 -0.16 -1.10 16 24 C -0.16 -1.33 5.45 -26.74 -0.15 -1.47 16 25 C 0.30 3.32 1.63 -26.73 -0.04 3.27 16 26 F -0.20 -2.54 16.45 2.25 0.04 -2.50 16 27 F -0.20 -2.43 15.60 2.25 0.04 -2.40 16 28 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.14 3.13 5.64 -52.49 -0.30 2.83 16 30 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 31 H 0.12 1.87 6.73 -52.48 -0.35 1.51 16 32 H 0.41 7.72 7.01 -40.82 -0.29 7.43 16 33 H 0.06 0.86 7.48 -51.93 -0.39 0.47 16 34 H 0.06 0.85 7.74 -51.93 -0.40 0.45 16 35 H 0.07 0.85 7.80 -51.93 -0.41 0.45 16 36 H 0.09 1.17 7.17 -51.93 -0.37 0.80 16 37 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.60 7.80 -51.93 -0.41 0.20 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 349.92 15.07 5.27 5.27 Total: -1.00 -28.67 349.92 -7.33 -35.99 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -5.28 Total: 10.04 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -2.85 Total: -17.13 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.44 Total: -36.58 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: 0.00 Total: -4.70 kcal Atomic # 9 Polarization: -8.11 SS G_CDS: 0.11 Total: -7.99 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.67 -7.33 -35.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849314705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.828 kcal (2) G-P(sol) polarization free energy of solvation -28.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds