Wall clock time and date at job start Sat Apr 11 2020 02:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00449 * 2 1 4 4 H 1.48501 * 109.47087 * 240.00338 * 3 2 1 5 5 H 1.48504 * 109.46804 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47351 * 119.99862 * 3 2 1 7 7 C 1.37880 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00176 * 183.20392 * 7 2 1 9 9 C 1.50705 * 120.00035 * 3.20174 * 7 2 1 10 10 C 1.53001 * 115.54803 * 323.98823 * 9 7 2 11 11 O 1.45202 * 109.46908 * 306.00530 * 10 9 7 12 12 C 1.34761 * 116.99557 * 175.24353 * 11 10 9 13 13 O 1.21506 * 120.00340 * 5.18702 * 12 11 10 14 14 C 1.47390 * 119.99531 * 185.19089 * 12 11 10 15 15 C 1.39738 * 120.20796 * 353.47191 * 14 12 11 16 16 C 1.37774 * 119.91809 * 179.97438 * 15 14 12 17 17 C 1.38578 * 120.33416 * 0.02562 * 16 15 14 18 18 C 1.38012 * 120.42316 * 0.02562 * 17 16 15 19 19 C 1.38860 * 120.07239 * 359.69756 * 18 17 16 20 20 N 1.39252 * 120.16868 * 180.27678 * 19 18 17 21 21 C 1.34773 * 120.00232 * 327.33374 * 20 19 18 22 22 O 1.21273 * 120.00088 * 4.42227 * 21 20 19 23 23 C 1.50694 * 120.00056 * 184.41331 * 21 20 19 24 24 C 1.52999 * 117.50593 * 248.75198 * 23 21 20 25 25 C 1.53004 * 117.50054 * 180.08507 * 23 21 20 26 26 C 1.52997 * 117.49737 * 109.65495 * 9 7 2 27 27 C 1.52997 * 117.49806 * 178.31979 * 9 7 2 28 28 H 0.97002 * 119.99309 * 5.00705 * 1 2 3 29 29 H 1.09002 * 109.46939 * 186.00416 * 10 9 7 30 30 H 1.08995 * 109.47281 * 66.00789 * 10 9 7 31 31 H 1.08004 * 120.04297 * 359.95360 * 15 14 12 32 32 H 1.08004 * 119.83375 * 179.97438 * 16 15 14 33 33 H 1.08003 * 119.78811 * 179.97438 * 17 16 15 34 34 H 1.08003 * 119.96721 * 179.97438 * 18 17 16 35 35 H 0.97005 * 119.99233 * 147.33291 * 20 19 18 36 36 H 1.09000 * 115.54705 * 34.42551 * 23 21 20 37 37 H 1.09001 * 117.49450 * 0.02562 * 24 23 21 38 38 H 1.08993 * 117.50255 * 145.01959 * 24 23 21 39 39 H 1.08996 * 117.50003 * 214.98286 * 25 23 21 40 40 H 1.08996 * 117.49810 * 359.97438 * 25 23 21 41 41 H 1.08998 * 117.49851 * 215.00211 * 26 9 7 42 42 H 1.09001 * 117.50124 * 0.02668 * 26 9 7 43 43 H 1.08995 * 117.49980 * 359.97180 * 27 9 7 44 44 H 1.08999 * 117.49956 * 144.97841 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0833 -1.1949 0.0517 9 6 1.2527 -2.4982 -0.0740 10 6 -0.0819 -2.5334 0.6732 11 8 0.1254 -2.1328 2.0534 12 6 -0.9713 -2.0150 2.8275 13 8 -2.0602 -2.3311 2.3907 14 6 -0.8500 -1.5027 4.2042 15 6 0.4111 -1.2667 4.7579 16 6 0.5176 -0.7872 6.0452 17 6 -0.6205 -0.5378 6.7955 18 6 -1.8729 -0.7669 6.2628 19 6 -2.0004 -1.2446 4.9652 20 7 -3.2632 -1.4710 4.4237 21 6 -4.2746 -1.8741 5.2180 22 8 -4.1068 -1.9623 6.4159 23 6 -5.6142 -2.2149 4.6178 24 6 -6.7847 -1.2786 4.9245 25 6 -6.7223 -2.6642 5.5723 26 6 1.3572 -3.3016 -1.3719 27 6 2.0761 -3.7872 -0.1106 28 1 -0.4849 0.8369 -0.0733 29 1 -0.4873 -3.5448 0.6454 30 1 -0.7830 -1.8478 0.1973 31 1 1.3013 -1.4601 4.1777 32 1 1.4930 -0.6057 6.4720 33 1 -0.5268 -0.1624 7.8038 34 1 -2.7549 -0.5704 6.8543 35 1 -3.4148 -1.3386 3.4748 36 1 -5.5834 -2.6752 3.6303 37 1 -6.5857 -0.4158 5.5602 38 1 -7.5241 -1.1232 4.1390 39 1 -7.4208 -3.4197 5.2126 40 1 -6.4823 -2.7137 6.6344 41 1 0.4751 -3.8553 -1.6933 42 1 1.9700 -2.8872 -2.1724 43 1 3.1615 -3.6920 -0.0820 44 1 1.6672 -4.6602 0.3979 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849786587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:18:12 Heat of formation + Delta-G solvation = -32.226815 kcal Electronic energy + Delta-G solvation = -28075.054053 eV Core-core repulsion = 24152.677638 eV Total energy + Delta-G solvation = -3922.376415 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.85252 -39.50588 -38.28444 -36.72689 -36.33321 -35.23270 -34.40503 -32.21925 -31.19959 -29.76378 -26.68696 -25.49875 -24.97838 -23.61831 -22.67800 -22.15276 -21.30505 -20.48434 -19.90178 -19.20599 -17.65637 -17.45126 -17.08243 -16.67918 -15.85273 -15.46056 -15.40426 -15.03324 -14.74384 -14.54801 -14.47328 -13.97063 -13.80546 -13.55483 -13.12291 -12.70432 -12.64342 -12.23771 -11.95238 -11.79563 -11.75728 -11.49831 -11.41192 -11.06454 -10.83966 -10.83402 -10.73393 -10.55465 -10.45021 -10.39227 -10.01024 -9.79986 -9.52079 -9.40339 -9.02103 -8.84757 -8.79437 -8.27948 -8.06669 -6.05621 -4.17020 0.93086 1.44047 2.41830 2.99905 3.14008 3.25279 3.31130 3.33092 3.53739 3.65394 4.05654 4.32001 4.49745 4.59244 4.68479 4.90188 4.96666 5.04762 5.09775 5.25859 5.37792 5.42504 5.49897 5.54172 5.60156 5.66963 5.75174 5.90519 6.00118 6.10537 6.17562 6.30377 6.37329 6.44112 6.54592 6.56369 6.59986 6.62726 6.76143 6.91991 7.04452 7.19527 7.36749 7.42296 7.59217 7.85402 8.10269 8.27426 8.58975 8.81132 9.45507 10.91165 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.003697 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.714100 B = 7570.976544 C = 8247.617070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.075 3.925 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.479 4.479 8 H 0.062 0.938 9 C 0.045 3.955 10 C 0.120 3.880 11 O -0.311 6.311 12 C 0.512 3.488 13 O -0.535 6.535 14 C -0.146 4.146 15 C -0.039 4.039 16 C -0.153 4.153 17 C -0.075 4.075 18 C -0.145 4.145 19 C 0.204 3.796 20 N -0.652 5.652 21 C 0.545 3.455 22 O -0.530 6.530 23 C -0.194 4.194 24 C -0.152 4.152 25 C -0.146 4.146 26 C -0.195 4.195 27 C -0.209 4.209 28 H 0.262 0.738 29 H 0.021 0.979 30 H 0.119 0.881 31 H 0.147 0.853 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.146 0.854 35 H 0.426 0.574 36 H 0.130 0.870 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.351 -1.498 10.392 13.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.128 4.128 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.516 4.516 8 H 0.080 0.920 9 C 0.045 3.955 10 C 0.047 3.953 11 O -0.225 6.225 12 C 0.358 3.642 13 O -0.429 6.429 14 C -0.149 4.149 15 C -0.058 4.058 16 C -0.172 4.172 17 C -0.094 4.094 18 C -0.165 4.165 19 C 0.107 3.893 20 N -0.300 5.300 21 C 0.334 3.666 22 O -0.407 6.407 23 C -0.215 4.215 24 C -0.189 4.189 25 C -0.183 4.183 26 C -0.233 4.233 27 C -0.246 4.246 28 H 0.073 0.927 29 H 0.040 0.960 30 H 0.136 0.864 31 H 0.164 0.836 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.164 0.836 35 H 0.269 0.731 36 H 0.148 0.852 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.733 -1.562 11.066 14.183 hybrid contribution 0.464 0.764 -0.871 1.248 sum -8.269 -0.798 10.195 13.151 Atomic orbital electron populations 1.69761 1.05943 1.26872 1.49765 1.24926 0.94845 0.99145 0.93862 0.86573 0.79572 0.82651 0.78763 1.20231 1.21217 1.19968 1.20441 0.92552 0.88454 1.50193 0.92017 1.18923 0.92453 0.90594 0.93530 1.22917 0.99600 0.96502 0.76257 1.86505 1.33397 1.77547 1.25013 1.20764 0.83093 0.74541 0.85793 1.90574 1.28593 1.48680 1.75039 1.19174 0.93526 1.08856 0.93379 1.21455 0.96668 0.92959 0.94688 1.21121 0.98921 1.02539 0.94600 1.21234 0.91927 0.96649 0.99565 1.21256 0.99127 1.01554 0.94543 1.17699 0.83579 0.94861 0.93141 1.43686 1.07284 1.64627 1.14378 1.19824 0.84944 0.75523 0.86304 1.90642 1.82810 1.52325 1.14922 1.22174 0.88374 1.08295 1.02648 1.22976 0.97981 0.94485 1.03481 1.22970 0.98446 0.97568 0.99324 1.22987 1.01526 1.06099 0.92650 1.22961 0.98551 0.99979 1.03151 0.92739 0.96036 0.86374 0.83564 0.85290 0.85454 0.83603 0.73082 0.85169 0.88203 0.87563 0.87789 0.87379 0.91436 0.89773 0.90292 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.62 10.26 55.43 0.57 -23.05 16 2 C 0.07 1.94 5.35 -17.82 -0.10 1.85 16 3 Si 0.90 20.44 29.54 -169.99 -5.02 15.41 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.48 -12.57 8.78 -34.44 -0.30 -12.87 16 8 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 9 C 0.05 1.10 2.19 -155.66 -0.34 0.76 16 10 C 0.12 2.89 4.39 37.16 0.16 3.05 16 11 O -0.31 -7.29 9.07 -40.66 -0.37 -7.66 16 12 C 0.51 10.96 7.85 34.46 0.27 11.23 16 13 O -0.54 -11.65 13.75 -19.27 -0.26 -11.92 16 14 C -0.15 -2.70 5.89 -104.83 -0.62 -3.31 16 15 C -0.04 -0.64 9.61 -39.19 -0.38 -1.02 16 16 C -0.15 -2.06 10.02 -39.63 -0.40 -2.46 16 17 C -0.07 -0.97 10.03 -39.54 -0.40 -1.37 16 18 C -0.14 -2.19 8.70 -39.43 -0.34 -2.54 16 19 C 0.20 3.49 6.35 -83.47 -0.53 2.96 16 20 N -0.65 -10.46 4.61 -9.68 -0.04 -10.50 16 21 C 0.55 8.07 7.46 -10.99 -0.08 7.99 16 22 O -0.53 -8.81 13.54 5.56 0.08 -8.74 16 23 C -0.19 -2.19 6.19 -91.77 -0.57 -2.76 16 24 C -0.15 -1.35 10.24 -26.69 -0.27 -1.63 16 25 C -0.15 -1.37 10.05 -26.69 -0.27 -1.63 16 26 C -0.19 -4.21 9.96 -26.69 -0.27 -4.47 16 27 C -0.21 -4.43 9.92 -26.69 -0.26 -4.70 16 28 H 0.26 6.80 8.32 -40.82 -0.34 6.47 16 29 H 0.02 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.12 3.11 5.90 -51.93 -0.31 2.80 16 31 H 0.15 2.43 7.63 -52.48 -0.40 2.03 16 32 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 33 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 34 H 0.15 2.19 6.04 -52.48 -0.32 1.87 16 35 H 0.43 6.94 6.48 -40.82 -0.26 6.67 16 36 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.11 1.12 7.67 -51.93 -0.40 0.72 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 42 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 43 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 44 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 374.25 15.07 5.64 5.64 Total: -1.00 -29.38 374.25 -9.98 -39.36 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -5.88 Total: 12.37 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -4.69 Total: -10.92 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.52 Total: -33.56 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.56 Total: -28.32 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.38 -9.98 -39.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849786587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.137 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds