Wall clock time and date at job start Sat Apr 11 2020 02:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47369 * 11.91558 * 3 2 1 5 5 C 1.50693 * 109.47030 * 59.99631 * 4 3 2 6 6 O 1.20832 * 120.00350 * 359.97438 * 5 4 3 7 7 O 1.34267 * 120.00030 * 179.97438 * 5 4 3 8 8 C 1.35923 * 117.00173 * 175.01282 * 7 5 4 9 9 C 1.38824 * 120.02258 * 255.01977 * 8 7 5 10 10 C 1.38186 * 120.08239 * 179.71852 * 9 8 7 11 11 C 1.38157 * 120.12393 * 0.55933 * 10 9 8 12 12 C 1.38893 * 120.03846 * 359.71964 * 11 10 9 13 13 O 1.35749 * 120.03826 * 179.97438 * 12 11 10 14 14 C 1.34841 * 116.99592 * 185.61680 * 13 12 11 15 15 H 1.07994 * 119.99876 * 354.94224 * 14 13 12 16 16 C 1.38647 * 119.99410 * 174.93671 * 14 13 12 17 17 N 1.31558 * 120.00748 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99868 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46916 * 60.00046 * 18 16 14 20 20 H 1.48493 * 109.47270 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46935 * 300.00567 * 18 16 14 22 22 C 1.38575 * 120.01970 * 75.29978 * 8 7 5 23 23 C 1.53001 * 109.46752 * 251.91218 * 3 2 1 24 24 C 1.52992 * 109.47463 * 300.00285 * 23 3 2 25 25 C 1.53002 * 109.47084 * 300.00365 * 24 23 3 26 26 C 1.52998 * 109.47446 * 59.99840 * 25 24 23 27 27 C 1.53002 * 109.46796 * 131.91465 * 3 2 1 28 28 H 1.08995 * 109.47172 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.46513 * 299.99798 * 4 3 2 30 30 H 1.08000 * 119.95683 * 359.97438 * 9 8 7 31 31 H 1.07998 * 119.93829 * 180.25358 * 10 9 8 32 32 H 1.07996 * 119.97706 * 179.69550 * 11 10 9 33 33 H 0.96996 * 120.00725 * 180.02562 * 17 16 14 34 34 H 1.08001 * 120.05982 * 359.97263 * 22 8 7 35 35 H 1.09004 * 109.46759 * 180.02562 * 23 3 2 36 36 H 1.09004 * 109.47253 * 60.00431 * 23 3 2 37 37 H 1.09000 * 109.47293 * 180.02562 * 24 23 3 38 38 H 1.08995 * 109.47168 * 59.99750 * 24 23 3 39 39 H 1.09001 * 109.47465 * 180.02562 * 25 24 23 40 40 H 1.09004 * 109.47160 * 299.99847 * 25 24 23 41 41 H 1.09004 * 109.46935 * 59.99869 * 26 25 24 42 42 H 1.08999 * 109.47779 * 179.97438 * 26 25 24 43 43 H 1.08995 * 109.47069 * 179.97438 * 27 3 2 44 44 H 1.09000 * 109.47084 * 299.99758 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1188 -1.4105 -0.2978 5 6 2.6166 -1.8518 -1.6484 6 8 1.9212 -1.1136 -2.3052 7 8 2.9420 -3.0653 -2.1219 8 6 2.3726 -3.4422 -3.2972 9 6 1.3414 -4.3716 -3.3029 10 6 0.7577 -4.7513 -4.4965 11 6 1.2059 -4.2160 -5.6887 12 6 2.2412 -3.2901 -5.6894 13 8 2.6820 -2.7645 -6.8609 14 6 3.7638 -1.9618 -6.8029 15 1 4.1893 -1.6972 -5.8462 16 6 4.3300 -1.4762 -7.9717 17 7 3.8115 -1.7982 -9.1371 18 14 5.8292 -0.3646 -7.8916 19 1 6.9440 -1.0844 -7.2250 20 1 6.2376 0.0156 -9.2677 21 1 5.4975 0.8589 -7.1182 22 6 2.8249 -2.9032 -4.4910 23 6 3.1178 0.4488 1.3713 24 6 2.6071 1.8599 1.6691 25 6 3.1166 2.8237 0.5956 26 6 2.6069 2.3757 -0.7756 27 6 3.1176 0.9645 -1.0735 28 1 4.2087 -1.4099 -0.2983 29 1 2.7558 -2.0971 0.4670 30 1 0.9922 -4.7954 -2.3729 31 1 -0.0471 -5.4715 -4.4978 32 1 0.7513 -4.5181 -6.6205 33 1 4.2079 -1.4588 -9.9548 34 1 3.6298 -2.1830 -4.4888 35 1 4.2078 0.4497 1.3711 36 1 2.7548 -0.2379 2.1360 37 1 2.9706 2.1792 2.6458 38 1 1.5172 1.8593 1.6690 39 1 2.7532 3.8292 0.8080 40 1 4.2067 2.8243 0.5956 41 1 1.5168 2.3752 -0.7756 42 1 2.9694 3.0626 -1.5403 43 1 4.2075 0.9654 -1.0732 44 1 2.7544 0.6453 -2.0503 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851089347.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:18:17 Heat of formation + Delta-G solvation = -64.528894 kcal Electronic energy + Delta-G solvation = -27980.374093 eV Core-core repulsion = 24056.596955 eV Total energy + Delta-G solvation = -3923.777138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.29712 -39.86111 -38.70387 -37.05149 -35.81673 -35.71888 -33.31854 -32.33138 -31.12856 -29.92629 -29.01193 -27.92449 -25.44990 -23.81387 -23.05133 -22.56255 -21.71914 -21.06177 -20.36897 -18.33297 -17.93928 -17.29427 -16.68914 -16.20350 -16.00653 -15.40247 -15.16921 -14.91928 -14.74607 -14.42225 -14.27141 -13.77967 -13.70904 -13.57084 -13.42087 -13.19810 -12.96536 -12.79032 -12.40875 -12.28743 -12.11060 -12.08852 -11.88158 -11.76926 -11.52865 -11.39233 -11.34101 -11.08595 -10.88703 -10.81745 -10.78519 -10.54626 -10.44745 -10.33375 -10.00402 -9.55674 -8.89644 -8.19783 -7.38078 -6.50328 -4.10102 1.71740 2.18701 2.21413 2.71755 2.79841 2.98807 3.09888 3.11919 3.14045 3.65905 3.92086 4.16286 4.33763 4.42828 4.46232 4.68317 4.76991 4.84991 4.98418 5.02301 5.06226 5.14822 5.17622 5.21946 5.25376 5.33017 5.48099 5.56918 5.58994 5.72451 5.74530 5.81786 5.83655 5.97164 5.98612 6.11206 6.12920 6.14822 6.32844 6.53019 6.86420 6.96257 7.05823 7.10659 7.29744 7.55100 7.58027 7.92644 8.07123 8.94345 9.60638 10.67101 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.011209 B = 0.003816 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.345828 B = 7335.867099 C = 9128.797284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C 0.222 3.778 3 C 0.054 3.946 4 C -0.105 4.105 5 C 0.448 3.552 6 O -0.473 6.473 7 O -0.294 6.294 8 C 0.120 3.880 9 C -0.212 4.212 10 C -0.065 4.065 11 C -0.186 4.186 12 C 0.164 3.836 13 O -0.170 6.170 14 C -0.394 4.394 15 H 0.091 0.909 16 C 0.042 3.958 17 N -0.860 5.860 18 Si 0.940 3.060 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.269 1.269 22 C -0.229 4.229 23 C -0.106 4.106 24 C -0.123 4.123 25 C -0.121 4.121 26 C -0.122 4.122 27 C -0.127 4.127 28 H 0.128 0.872 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.272 0.728 34 H 0.133 0.867 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.274 4.042 21.064 21.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.103 5.103 2 C -0.096 4.096 3 C 0.051 3.949 4 C -0.143 4.143 5 C 0.290 3.710 6 O -0.357 6.357 7 O -0.209 6.209 8 C 0.079 3.921 9 C -0.231 4.231 10 C -0.083 4.083 11 C -0.206 4.206 12 C 0.109 3.891 13 O -0.073 6.073 14 C -0.470 4.470 15 H 0.108 0.892 16 C -0.163 4.163 17 N -0.494 5.494 18 Si 0.765 3.235 19 H -0.194 1.194 20 H -0.201 1.201 21 H -0.194 1.194 22 C -0.248 4.248 23 C -0.144 4.144 24 C -0.161 4.161 25 C -0.158 4.158 26 C -0.160 4.160 27 C -0.165 4.165 28 H 0.146 0.854 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.082 0.918 34 H 0.150 0.850 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.298 4.313 20.323 20.816 hybrid contribution 1.120 0.517 -0.080 1.236 sum 2.418 4.830 20.243 20.951 Atomic orbital electron populations 1.81172 1.12662 1.07751 1.08677 1.28604 0.94558 0.93597 0.92888 1.18178 0.82543 0.95224 0.98990 1.21516 1.04623 0.95744 0.92426 1.23838 0.78576 0.80101 0.88454 1.90714 1.34123 1.52535 1.58330 1.84493 1.64446 1.34798 1.37175 1.18187 0.94656 0.97004 0.82254 1.20495 0.99359 1.04783 0.98469 1.20487 0.98187 0.98481 0.91151 1.20341 1.00693 1.01002 0.98541 1.19113 0.92603 0.91218 0.86128 1.84004 1.42581 1.55686 1.25012 1.21266 1.04989 1.26065 0.94663 0.89200 1.25286 0.98976 0.97939 0.94067 1.70021 1.39617 1.42222 0.97537 0.85791 0.80027 0.79683 0.78044 1.19355 1.20133 1.19393 1.21176 1.05801 1.06483 0.91370 1.21646 1.02046 0.97509 0.93235 1.21580 1.01048 0.94317 0.99145 1.21581 1.01011 0.98664 0.94575 1.21556 1.01008 0.96220 0.97167 1.21997 1.01418 0.93722 0.99334 0.85351 0.86633 0.86843 0.86007 0.85873 0.91820 0.84984 0.89219 0.90651 0.91076 0.92063 0.91889 0.91389 0.92136 0.91037 0.89892 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.97 18.54 42.16 0.78 -6.19 16 2 C 0.22 2.95 9.56 -20.76 -0.20 2.75 16 3 C 0.05 0.50 0.49 -157.29 -0.08 0.43 16 4 C -0.10 -0.92 4.86 -27.89 -0.14 -1.05 16 5 C 0.45 6.69 7.24 36.00 0.26 6.96 16 6 O -0.47 -8.80 11.93 -18.75 -0.22 -9.02 16 7 O -0.29 -4.95 10.03 -23.62 -0.24 -5.19 16 8 C 0.12 2.39 5.18 -39.24 -0.20 2.19 16 9 C -0.21 -3.92 9.98 -39.38 -0.39 -4.31 16 10 C -0.06 -1.18 10.03 -39.63 -0.40 -1.58 16 11 C -0.19 -3.98 9.99 -39.37 -0.39 -4.37 16 12 C 0.16 4.04 6.65 -39.13 -0.26 3.78 16 13 O -0.17 -4.87 9.76 0.02 0.00 -4.87 16 14 C -0.39 -11.05 9.49 30.88 0.29 -10.76 16 15 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 16 C 0.04 1.16 5.49 -17.52 -0.10 1.06 16 17 N -0.86 -25.07 13.67 55.48 0.76 -24.32 16 18 Si 0.94 20.34 29.55 -169.99 -5.02 15.31 16 19 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 22 C -0.23 -5.21 8.58 -39.25 -0.34 -5.55 16 23 C -0.11 -0.63 4.71 -26.73 -0.13 -0.75 16 24 C -0.12 -0.83 5.70 -26.73 -0.15 -0.98 16 25 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 26 C -0.12 -1.18 5.70 -26.73 -0.15 -1.33 16 27 C -0.13 -1.29 4.42 -26.73 -0.12 -1.41 16 28 H 0.13 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.12 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 33 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.13 3.05 5.64 -52.49 -0.30 2.75 16 35 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.53 7.23 -51.93 -0.38 0.15 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.70 7.23 -51.93 -0.38 0.33 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.10 1.41 5.52 -51.93 -0.29 1.12 16 LS Contribution 365.36 15.07 5.51 5.51 Total: -1.00 -34.66 365.36 -6.90 -41.55 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.81 Total: 3.16 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -2.64 Total: -15.94 kcal Atomic # 7 Polarization: -32.05 SS G_CDS: 1.54 Total: -30.51 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.46 Total: -19.09 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.66 -6.90 -41.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851089347.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.975 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds