Wall clock time and date at job start Sat Apr 11 2020 02:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47369 * 11.91558 * 3 2 1 5 5 C 1.50693 * 109.47030 * 59.99631 * 4 3 2 6 6 O 1.20832 * 120.00350 * 359.97438 * 5 4 3 7 7 O 1.34267 * 120.00030 * 179.97438 * 5 4 3 8 8 C 1.35923 * 117.00173 * 175.01282 * 7 5 4 9 9 C 1.38824 * 120.02258 * 255.01977 * 8 7 5 10 10 C 1.38186 * 120.08239 * 179.71852 * 9 8 7 11 11 C 1.38157 * 120.12393 * 0.55933 * 10 9 8 12 12 C 1.38893 * 120.03846 * 359.71964 * 11 10 9 13 13 O 1.35749 * 120.03826 * 179.97438 * 12 11 10 14 14 C 1.34841 * 116.99592 * 185.61680 * 13 12 11 15 15 H 1.07994 * 119.99876 * 354.94224 * 14 13 12 16 16 C 1.38647 * 119.99410 * 174.93671 * 14 13 12 17 17 N 1.31558 * 120.00748 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99868 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46916 * 60.00046 * 18 16 14 20 20 H 1.48493 * 109.47270 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46935 * 300.00567 * 18 16 14 22 22 C 1.38575 * 120.01970 * 75.29978 * 8 7 5 23 23 C 1.53001 * 109.46752 * 251.91218 * 3 2 1 24 24 C 1.52992 * 109.47463 * 300.00285 * 23 3 2 25 25 C 1.53002 * 109.47084 * 300.00365 * 24 23 3 26 26 C 1.52998 * 109.47446 * 59.99840 * 25 24 23 27 27 C 1.53002 * 109.46796 * 131.91465 * 3 2 1 28 28 H 1.08995 * 109.47172 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.46513 * 299.99798 * 4 3 2 30 30 H 1.08000 * 119.95683 * 359.97438 * 9 8 7 31 31 H 1.07998 * 119.93829 * 180.25358 * 10 9 8 32 32 H 1.07996 * 119.97706 * 179.69550 * 11 10 9 33 33 H 0.96996 * 120.00725 * 180.02562 * 17 16 14 34 34 H 1.08001 * 120.05982 * 359.97263 * 22 8 7 35 35 H 1.09004 * 109.46759 * 180.02562 * 23 3 2 36 36 H 1.09004 * 109.47253 * 60.00431 * 23 3 2 37 37 H 1.09000 * 109.47293 * 180.02562 * 24 23 3 38 38 H 1.08995 * 109.47168 * 59.99750 * 24 23 3 39 39 H 1.09001 * 109.47465 * 180.02562 * 25 24 23 40 40 H 1.09004 * 109.47160 * 299.99847 * 25 24 23 41 41 H 1.09004 * 109.46935 * 59.99869 * 26 25 24 42 42 H 1.08999 * 109.47779 * 179.97438 * 26 25 24 43 43 H 1.08995 * 109.47069 * 179.97438 * 27 3 2 44 44 H 1.09000 * 109.47084 * 299.99758 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1188 -1.4105 -0.2978 5 6 2.6166 -1.8518 -1.6484 6 8 1.9212 -1.1136 -2.3052 7 8 2.9420 -3.0653 -2.1219 8 6 2.3726 -3.4422 -3.2972 9 6 1.3414 -4.3716 -3.3029 10 6 0.7577 -4.7513 -4.4965 11 6 1.2059 -4.2160 -5.6887 12 6 2.2412 -3.2901 -5.6894 13 8 2.6820 -2.7645 -6.8609 14 6 3.7638 -1.9618 -6.8029 15 1 4.1893 -1.6972 -5.8462 16 6 4.3300 -1.4762 -7.9717 17 7 3.8115 -1.7982 -9.1371 18 14 5.8292 -0.3646 -7.8916 19 1 6.9440 -1.0844 -7.2250 20 1 6.2376 0.0156 -9.2677 21 1 5.4975 0.8589 -7.1182 22 6 2.8249 -2.9032 -4.4910 23 6 3.1178 0.4488 1.3713 24 6 2.6071 1.8599 1.6691 25 6 3.1166 2.8237 0.5956 26 6 2.6069 2.3757 -0.7756 27 6 3.1176 0.9645 -1.0735 28 1 4.2087 -1.4099 -0.2983 29 1 2.7558 -2.0971 0.4670 30 1 0.9922 -4.7954 -2.3729 31 1 -0.0471 -5.4715 -4.4978 32 1 0.7513 -4.5181 -6.6205 33 1 4.2079 -1.4588 -9.9548 34 1 3.6298 -2.1830 -4.4888 35 1 4.2078 0.4497 1.3711 36 1 2.7548 -0.2379 2.1360 37 1 2.9706 2.1792 2.6458 38 1 1.5172 1.8593 1.6690 39 1 2.7532 3.8292 0.8080 40 1 4.2067 2.8243 0.5956 41 1 1.5168 2.3752 -0.7756 42 1 2.9694 3.0626 -1.5403 43 1 4.2075 0.9654 -1.0732 44 1 2.7544 0.6453 -2.0503 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851089347.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:18:16 Heat of formation + Delta-G solvation = -85.284924 kcal Electronic energy + Delta-G solvation = -27981.274142 eV Core-core repulsion = 24056.596955 eV Total energy + Delta-G solvation = -3924.677187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.53031 -40.98370 -40.24783 -38.49762 -37.34424 -36.81012 -34.35246 -34.09428 -31.74951 -31.48803 -30.69960 -28.84069 -27.43137 -24.88698 -23.75281 -23.65693 -23.37321 -22.14093 -21.39517 -20.12444 -19.52560 -18.43886 -17.84936 -17.64205 -17.12353 -16.89570 -16.32325 -16.12307 -16.04204 -15.75075 -15.56529 -15.30948 -14.92805 -14.74614 -14.47412 -14.45716 -14.23946 -13.95009 -13.70684 -13.30800 -13.19747 -13.06424 -12.92160 -12.90567 -12.79609 -12.69262 -12.51342 -12.50246 -12.19137 -12.05973 -11.88762 -11.82537 -11.49467 -11.44424 -11.09383 -10.90029 -10.82581 -9.81774 -9.18010 -8.52697 -6.22780 0.13411 0.52429 1.05643 1.31602 1.42427 1.48812 1.65040 1.81257 1.82385 2.14046 2.71803 2.83550 3.05133 3.33427 3.39885 3.57231 3.77067 3.87002 3.98378 4.10634 4.15152 4.20803 4.28752 4.34994 4.44588 4.49945 4.54914 4.57302 4.64162 4.75106 4.82314 4.90146 4.92866 5.00959 5.06142 5.17996 5.21772 5.24092 5.33892 5.38506 5.39205 5.44399 5.50220 5.52082 5.59461 5.93275 5.99053 6.59307 6.74760 6.90569 7.65611 8.69597 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.011209 B = 0.003816 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.345828 B = 7335.867099 C = 9128.797284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.241 3.759 3 C 0.053 3.947 4 C -0.095 4.095 5 C 0.440 3.560 6 O -0.517 6.517 7 O -0.290 6.290 8 C 0.118 3.882 9 C -0.198 4.198 10 C -0.051 4.051 11 C -0.200 4.200 12 C 0.127 3.873 13 O -0.222 6.222 14 C -0.419 4.419 15 H 0.096 0.904 16 C -0.017 4.017 17 N -0.916 5.916 18 Si 1.016 2.984 19 H -0.252 1.252 20 H -0.268 1.268 21 H -0.259 1.259 22 C -0.243 4.243 23 C -0.099 4.099 24 C -0.125 4.125 25 C -0.115 4.115 26 C -0.124 4.124 27 C -0.128 4.128 28 H 0.177 0.823 29 H 0.150 0.850 30 H 0.153 0.847 31 H 0.171 0.829 32 H 0.127 0.873 33 H 0.275 0.725 34 H 0.117 0.883 35 H 0.130 0.870 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.031 0.969 39 H 0.061 0.939 40 H 0.093 0.907 41 H 0.026 0.974 42 H 0.067 0.933 43 H 0.117 0.883 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.501 3.481 25.360 26.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.076 4.076 3 C 0.050 3.950 4 C -0.132 4.132 5 C 0.286 3.714 6 O -0.403 6.403 7 O -0.205 6.205 8 C 0.077 3.923 9 C -0.216 4.216 10 C -0.068 4.068 11 C -0.219 4.219 12 C 0.076 3.924 13 O -0.128 6.128 14 C -0.495 4.495 15 H 0.113 0.887 16 C -0.216 4.216 17 N -0.553 5.553 18 Si 0.834 3.166 19 H -0.175 1.175 20 H -0.192 1.192 21 H -0.184 1.184 22 C -0.263 4.263 23 C -0.137 4.137 24 C -0.163 4.163 25 C -0.153 4.153 26 C -0.161 4.161 27 C -0.166 4.166 28 H 0.194 0.806 29 H 0.168 0.832 30 H 0.171 0.829 31 H 0.188 0.812 32 H 0.145 0.855 33 H 0.084 0.916 34 H 0.135 0.865 35 H 0.148 0.852 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.112 0.888 41 H 0.044 0.956 42 H 0.085 0.915 43 H 0.135 0.865 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.504 3.726 24.683 25.207 hybrid contribution 0.237 0.594 -1.190 1.351 sum 3.742 4.320 23.493 24.178 Atomic orbital electron populations 1.81163 1.14958 1.09988 1.11053 1.29570 0.95610 0.91605 0.90821 1.18597 0.79760 0.95646 1.01026 1.21875 1.07266 0.95383 0.88711 1.25241 0.77591 0.78578 0.90023 1.90742 1.36282 1.53296 1.59981 1.84521 1.64518 1.36081 1.35399 1.18332 0.94592 0.96776 0.82636 1.21078 0.97531 1.02844 1.00177 1.21034 0.98355 0.97863 0.89586 1.20683 1.00075 1.00722 1.00408 1.19694 0.94070 0.92644 0.85980 1.83966 1.43933 1.57740 1.27181 1.21719 1.05575 1.26777 0.95434 0.88684 1.26602 1.02336 0.99383 0.93238 1.70161 1.42038 1.44689 0.98445 0.84699 0.75738 0.77493 0.78634 1.17549 1.19175 1.18378 1.21180 1.06008 1.06891 0.92234 1.21763 1.04307 0.96873 0.90737 1.21617 0.99378 0.95098 1.00174 1.21569 1.02382 0.98692 0.92618 1.21558 0.98925 0.96397 0.99251 1.21980 1.03275 0.93876 0.97439 0.80580 0.83185 0.82940 0.81184 0.85468 0.91570 0.86482 0.85198 0.88719 0.88554 0.94967 0.92029 0.88841 0.95552 0.91475 0.86515 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -16.63 18.54 20.01 0.37 -16.26 16 2 C 0.24 6.28 9.56 89.44 0.86 7.14 16 3 C 0.05 0.83 0.49 -53.98 -0.03 0.81 16 4 C -0.09 -1.24 4.86 29.85 0.14 -1.09 16 5 C 0.44 12.35 7.24 71.23 0.52 12.87 16 6 O -0.52 -19.50 11.93 21.95 0.26 -19.23 16 7 O -0.29 -9.14 10.03 4.53 0.05 -9.09 16 8 C 0.12 4.60 5.18 22.49 0.12 4.72 16 9 C -0.20 -6.75 9.98 22.40 0.22 -6.52 16 10 C -0.05 -1.73 10.03 22.24 0.22 -1.50 16 11 C -0.20 -8.65 9.99 22.41 0.22 -8.43 16 12 C 0.13 6.60 6.65 22.56 0.15 6.75 16 13 O -0.22 -13.69 9.76 -22.84 -0.22 -13.91 16 14 C -0.42 -25.02 9.49 67.92 0.64 -24.37 16 15 H 0.10 5.30 5.20 -2.91 -0.02 5.28 16 16 C -0.02 -0.99 5.49 84.83 0.47 -0.53 16 17 N -0.92 -56.48 13.67 21.61 0.30 -56.18 16 18 Si 1.02 42.84 29.55 68.60 2.03 44.87 16 19 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 20 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 21 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 22 C -0.24 -11.49 8.58 22.49 0.19 -11.29 16 23 C -0.10 -0.66 4.71 30.59 0.14 -0.51 16 24 C -0.13 -1.27 5.70 30.59 0.17 -1.09 16 25 C -0.12 -1.34 5.92 30.59 0.18 -1.16 16 26 C -0.12 -2.35 5.70 30.59 0.17 -2.17 16 27 C -0.13 -2.41 4.42 30.60 0.14 -2.28 16 28 H 0.18 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.15 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 31 H 0.17 4.16 8.06 -2.91 -0.02 4.14 16 32 H 0.13 5.27 8.06 -2.91 -0.02 5.25 16 33 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 34 H 0.12 5.73 5.64 -2.91 -0.02 5.71 16 35 H 0.13 -0.04 8.14 -2.38 -0.02 -0.06 16 36 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.03 0.52 7.23 -2.39 -0.02 0.50 16 39 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.03 0.66 7.23 -2.38 -0.02 0.64 16 42 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.06 1.61 5.52 -2.39 -0.01 1.60 16 Total: -1.00 -87.16 365.36 8.34 -78.82 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 1.03 Total: 19.66 kcal Atomic # 6 Polarization: -33.21 SS G_CDS: 4.54 Total: -28.67 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: 0.67 Total: -72.44 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: 0.08 Total: -42.24 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -87.16 8.34 -78.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851089347.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.467 kcal (2) G-P(sol) polarization free energy of solvation -87.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds