Wall clock time and date at job start Sat Apr 11 2020 02:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10 14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11 15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00166 * 179.97438 * 18 16 15 20 20 C 1.52996 * 109.47306 * 179.97438 * 19 18 16 21 21 C 1.53005 * 109.46911 * 179.97438 * 20 19 18 22 22 C 1.50702 * 109.47041 * 180.02562 * 21 20 19 23 23 C 1.34516 * 125.78843 * 89.99949 * 22 21 20 24 24 C 1.41381 * 106.83749 * 179.97438 * 23 22 21 25 25 C 1.34515 * 106.84679 * 0.02562 * 24 23 22 26 26 O 1.34309 * 125.78671 * 269.69936 * 22 21 20 27 27 C 1.38123 * 120.06577 * 0.04594 * 14 13 12 28 28 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 30 30 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 31 31 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 32 32 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 33 33 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 34 34 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 35 35 H 1.09004 * 109.47060 * 300.00868 * 19 18 16 36 36 H 1.09005 * 109.46669 * 60.00018 * 19 18 16 37 37 H 1.08993 * 109.47259 * 300.00133 * 20 19 18 38 38 H 1.09005 * 109.47163 * 60.00417 * 20 19 18 39 39 H 1.08993 * 109.47463 * 300.00247 * 21 20 19 40 40 H 1.09005 * 109.46671 * 60.00356 * 21 20 19 41 41 H 1.07994 * 126.58115 * 359.97438 * 23 22 21 42 42 H 1.07999 * 126.57894 * 179.97438 * 24 23 22 43 43 H 1.07993 * 125.79505 * 179.97438 * 25 24 23 44 44 H 1.08006 * 120.03219 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2649 -7.8051 -0.9051 17 8 1.6189 -7.1951 -1.8917 18 7 0.6605 -9.0028 -1.0340 19 6 0.4306 -9.5676 -2.3661 20 6 -0.2652 -10.9236 -2.2319 21 6 -0.5058 -11.5132 -3.6232 22 6 -1.1917 -12.8486 -3.4911 23 6 -2.5213 -13.0507 -3.4638 24 6 -2.7211 -14.4439 -3.3297 25 6 -1.5017 -15.0098 -3.2824 26 8 -0.5791 -14.0392 -3.3863 27 6 1.4365 -4.7345 0.2256 28 1 -0.4849 0.8401 -0.0004 29 1 3.9527 -2.4857 -0.0140 30 1 5.2811 -4.5473 0.1885 31 1 4.1534 -6.7248 0.4030 32 1 2.1300 -7.9003 1.0435 33 1 0.5456 -7.0924 0.9735 34 1 0.3769 -9.4904 -0.2449 35 1 -0.1992 -8.8911 -2.9439 36 1 1.3856 -9.6985 -2.8750 37 1 0.3650 -11.5998 -1.6544 38 1 -1.2202 -10.7932 -1.7229 39 1 -1.1362 -10.8369 -4.2004 40 1 0.4490 -11.6436 -4.1326 41 1 -3.2888 -12.2940 -3.5314 42 1 -3.6706 -14.9556 -3.2748 43 1 -1.2989 -16.0658 -3.1823 44 1 0.3579 -4.7882 0.2370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856224073.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:18:20 Heat of formation + Delta-G solvation = -35.335841 kcal Electronic energy + Delta-G solvation = -25598.157899 eV Core-core repulsion = 21675.646667 eV Total energy + Delta-G solvation = -3922.511232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.91475 -39.79582 -38.74324 -36.63608 -36.03310 -33.79954 -33.09625 -32.33794 -31.92669 -29.80602 -29.09378 -27.29748 -25.68014 -25.08621 -22.38366 -22.11209 -21.61886 -21.20921 -20.71825 -20.05007 -17.77458 -17.60326 -17.03145 -16.80589 -16.28770 -16.09335 -15.94336 -15.20559 -14.92369 -14.68309 -14.33839 -14.23574 -13.70736 -13.51609 -13.36410 -13.19796 -13.14884 -13.08639 -12.90285 -12.52196 -12.40465 -12.29756 -11.80292 -11.74131 -11.48256 -11.23582 -11.22853 -10.79190 -10.71343 -10.55641 -10.38602 -10.28722 -9.72422 -9.27241 -9.11806 -8.82537 -8.78280 -7.99790 -7.15117 -6.38627 -3.97416 1.35183 2.15304 2.25203 2.45896 2.61252 2.81261 3.15408 3.17633 3.23348 3.24720 4.01811 4.19288 4.48297 4.57257 4.65052 4.68484 4.75040 4.81306 4.96300 5.10314 5.15801 5.16481 5.18719 5.30182 5.45110 5.45884 5.53736 5.55993 5.71034 5.72975 5.74439 5.80341 5.83489 5.99864 6.13570 6.24360 6.37215 6.40604 6.72479 6.77116 6.98570 7.14015 7.33436 7.43125 7.47512 7.50933 7.89796 8.06830 8.35089 9.07388 9.78910 10.79845 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.024731 B = 0.001675 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.896229 B =16714.568491 C =17439.041652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.181 6.181 10 C 0.154 3.846 11 C -0.230 4.230 12 C -0.075 4.075 13 C -0.196 4.196 14 C -0.033 4.033 15 C -0.094 4.094 16 C 0.513 3.487 17 O -0.518 6.518 18 N -0.741 5.741 19 C 0.119 3.881 20 C -0.127 4.127 21 C -0.038 4.038 22 C -0.008 4.008 23 C -0.211 4.211 24 C -0.213 4.213 25 C -0.046 4.046 26 O -0.177 6.177 27 C -0.174 4.174 28 H 0.268 0.732 29 H 0.126 0.874 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.399 0.601 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.202 0.798 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.201 -27.483 -2.676 27.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.084 6.084 10 C 0.101 3.899 11 C -0.249 4.249 12 C -0.094 4.094 13 C -0.215 4.215 14 C -0.034 4.034 15 C -0.134 4.134 16 C 0.299 3.701 17 O -0.392 6.392 18 N -0.395 5.395 19 C -0.005 4.005 20 C -0.165 4.165 21 C -0.076 4.076 22 C -0.058 4.058 23 C -0.230 4.230 24 C -0.233 4.233 25 C -0.113 4.113 26 O -0.073 6.073 27 C -0.194 4.194 28 H 0.078 0.922 29 H 0.144 0.856 30 H 0.125 0.875 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.233 0.767 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.105 0.895 41 H 0.166 0.834 42 H 0.165 0.835 43 H 0.218 0.782 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.050 -26.829 -3.442 27.126 hybrid contribution 0.007 0.375 0.335 0.502 sum -2.043 -26.454 -3.107 26.714 Atomic orbital electron populations 1.70056 1.05924 1.27391 1.46644 1.25276 0.95837 0.98764 0.96716 0.85650 0.79143 0.80472 0.78171 1.19130 1.20213 1.20204 1.21368 0.91807 0.80866 1.52578 0.89084 1.83976 1.34244 1.11372 1.78846 1.19281 0.90254 0.87969 0.92393 1.21180 0.93839 0.98995 1.10929 1.20678 0.98365 0.92338 0.97987 1.20349 0.93310 0.96875 1.10975 1.18668 0.93238 0.91799 0.99712 1.20589 1.02599 0.95879 0.94288 1.20773 0.76991 0.80263 0.92031 1.90765 1.49056 1.59390 1.39990 1.46011 1.63128 1.21494 1.08842 1.21272 1.00603 0.93423 0.85169 1.21796 1.01790 0.96035 0.96879 1.20047 1.01533 0.87956 0.98027 1.22429 0.91811 0.86171 1.05395 1.21644 0.95625 0.96815 1.08937 1.21862 0.98785 0.94472 1.08133 1.24037 0.86971 0.93679 1.06635 1.84030 1.37428 1.15071 1.70756 1.19942 0.99049 0.89980 1.10402 0.92191 0.85626 0.87491 0.87956 0.88408 0.88243 0.76743 0.91237 0.91387 0.90822 0.90622 0.88276 0.89525 0.83411 0.83497 0.78176 0.86844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.90 13.67 55.48 0.76 -25.15 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 21.02 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.39 -11.23 9.49 30.89 0.29 -10.94 16 8 H 0.09 2.44 5.21 -52.49 -0.27 2.17 16 9 O -0.18 -5.35 9.76 0.05 0.00 -5.35 16 10 C 0.15 3.92 6.65 -39.11 -0.26 3.66 16 11 C -0.23 -5.29 9.17 -39.39 -0.36 -5.65 16 12 C -0.08 -1.48 10.04 -39.61 -0.40 -1.88 16 13 C -0.20 -3.61 9.70 -39.53 -0.38 -3.99 16 14 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 15 C -0.09 -1.24 5.83 -29.03 -0.17 -1.41 16 16 C 0.51 7.38 7.82 -10.99 -0.09 7.29 16 17 O -0.52 -10.15 16.03 5.56 0.09 -10.06 16 18 N -0.74 -7.31 5.56 -60.29 -0.33 -7.64 16 19 C 0.12 1.06 5.67 -4.04 -0.02 1.04 16 20 C -0.13 -0.79 5.31 -26.73 -0.14 -0.94 16 21 C -0.04 -0.24 5.75 -27.88 -0.16 -0.40 16 22 C -0.01 -0.06 6.58 -35.62 -0.23 -0.30 16 23 C -0.21 -1.64 10.81 -39.70 -0.43 -2.07 16 24 C -0.21 -1.51 10.91 -39.70 -0.43 -1.94 16 25 C -0.05 -0.31 12.09 29.42 0.36 0.05 16 26 O -0.18 -1.55 10.65 5.67 0.06 -1.49 16 27 C -0.17 -3.88 9.65 -39.40 -0.38 -4.26 16 28 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 30 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 33 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 34 H 0.40 2.63 8.47 -40.82 -0.35 2.29 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 43 H 0.20 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.11 2.44 8.06 -52.48 -0.42 2.02 16 LS Contribution 382.86 15.07 5.77 5.77 Total: -1.00 -36.72 382.86 -8.01 -44.73 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.96 Total: 5.02 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -3.36 Total: -21.84 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.42 Total: -32.79 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: 0.15 Total: -16.90 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.72 -8.01 -44.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856224073.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.392 kcal (2) G-P(sol) polarization free energy of solvation -36.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds