Wall clock time and date at job start Sat Apr 11 2020 02:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33938 * 125.62012 * 2 1 4 4 C 1.34908 * 109.38840 * 180.27374 * 3 2 1 5 5 C 1.46619 * 125.99059 * 179.75474 * 4 3 2 6 6 O 1.21711 * 119.99738 * 174.12216 * 5 4 3 7 7 N 1.34770 * 119.99966 * 354.11991 * 5 4 3 8 8 C 1.46497 * 120.00261 * 5.74869 * 7 5 4 9 9 C 1.50700 * 109.47161 * 83.64365 * 8 7 5 10 10 H 1.07996 * 119.99922 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99579 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00389 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99656 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47354 * 89.99963 * 13 11 9 15 15 H 1.48501 * 109.47004 * 209.99823 * 13 11 9 16 16 H 1.48498 * 109.47114 * 329.99792 * 13 11 9 17 17 C 1.39830 * 119.99816 * 185.74591 * 7 5 4 18 18 C 1.38901 * 120.07054 * 187.82393 * 17 7 5 19 19 C 1.38111 * 119.92384 * 179.72202 * 18 17 7 20 20 C 1.38283 * 120.07331 * 0.57139 * 19 18 17 21 21 C 1.50700 * 119.92915 * 179.70393 * 20 19 18 22 22 C 1.38289 * 120.14806 * 359.67971 * 20 19 18 23 23 C 1.38106 * 120.07055 * 0.04055 * 22 20 19 24 24 C 1.36569 * 108.01884 * 359.73215 * 4 3 2 25 25 C 1.35132 * 125.61457 * 179.80962 * 2 1 3 26 26 C 1.50701 * 126.44236 * 359.97438 * 25 2 1 27 27 O 1.42902 * 109.47515 * 179.71763 * 26 25 2 28 28 H 1.08997 * 109.47174 * 270.19221 * 1 2 3 29 29 H 1.09003 * 109.47016 * 30.18880 * 1 2 3 30 30 H 1.08992 * 109.47365 * 150.19189 * 1 2 3 31 31 H 1.08998 * 109.47470 * 203.64723 * 8 7 5 32 32 H 1.09006 * 109.46871 * 323.64647 * 8 7 5 33 33 H 0.97003 * 119.99811 * 180.02562 * 12 11 9 34 34 H 1.07996 * 120.03858 * 359.97143 * 18 17 7 35 35 H 1.08000 * 119.96016 * 180.25449 * 19 18 17 36 36 H 1.08999 * 109.47166 * 269.97698 * 21 20 19 37 37 H 1.09004 * 109.47056 * 29.97637 * 21 20 19 38 38 H 1.08997 * 109.47643 * 149.97666 * 21 20 19 39 39 H 1.08001 * 119.96594 * 180.02562 * 22 20 19 40 40 H 1.08000 * 120.03820 * 179.97438 * 23 22 20 41 41 H 1.08004 * 126.64359 * 180.02562 * 24 4 3 42 42 H 1.09001 * 109.46719 * 59.71394 * 26 25 2 43 43 H 1.09007 * 109.47186 * 299.72114 * 26 25 2 44 44 H 0.96701 * 113.99658 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2871 1.0888 0.0000 4 6 3.5823 0.7117 -0.0061 5 6 4.7412 1.6099 -0.0132 6 8 5.8650 1.1541 0.0897 7 7 4.5619 2.9402 -0.1336 8 6 3.2082 3.5002 -0.1307 9 6 2.7431 3.6827 1.2911 10 1 3.3913 3.4093 2.1105 11 6 1.4901 4.1987 1.5456 12 7 0.7006 4.5311 0.5477 13 14 0.9139 4.4256 3.3079 14 1 1.2957 5.7797 3.7831 15 1 -0.5625 4.2777 3.3689 16 1 1.5502 3.3998 4.1727 17 6 5.6681 3.7859 -0.2612 18 6 5.4988 5.1640 -0.2221 19 6 6.5942 5.9965 -0.3428 20 6 7.8569 5.4596 -0.5142 21 6 9.0491 6.3711 -0.6521 22 6 8.0284 4.0881 -0.5587 23 6 6.9380 3.2500 -0.4330 24 6 3.6250 -0.6533 -0.0040 25 6 2.2939 -1.0986 0.0037 26 6 1.8296 -2.5323 0.0090 27 8 2.9646 -3.4006 0.0050 28 1 -0.3633 0.0034 1.0276 29 1 -0.3633 0.8883 -0.5168 30 1 -0.3634 -0.8916 -0.5108 31 1 3.2129 4.4648 -0.6381 32 1 2.5326 2.8200 -0.6495 33 1 -0.1807 4.8945 0.7268 34 1 4.5122 5.5840 -0.0935 35 1 6.4636 7.0680 -0.3083 36 1 9.2057 6.6077 -1.7045 37 1 8.8693 7.2911 -0.0958 38 1 9.9344 5.8740 -0.2558 39 1 9.0160 3.6720 -0.6923 40 1 7.0724 2.1790 -0.4683 41 1 4.5112 -1.2706 -0.0071 42 1 1.2243 -2.7214 -0.8776 43 1 1.2333 -2.7178 0.9024 44 1 2.7401 -4.3412 0.0077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865040228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:18:25 Heat of formation + Delta-G solvation = -27.893287 kcal Electronic energy + Delta-G solvation = -28342.142000 eV Core-core repulsion = 24419.953501 eV Total energy + Delta-G solvation = -3922.188499 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.26869 -40.03830 -37.95350 -36.93676 -35.49783 -33.13907 -32.81705 -31.80390 -31.15269 -30.37373 -27.78482 -27.59256 -26.45688 -25.00118 -23.52005 -22.10108 -21.83001 -20.68512 -20.15952 -19.00701 -17.17865 -17.01371 -16.75527 -16.50757 -15.93728 -15.53814 -14.91512 -14.70270 -14.51004 -14.36243 -14.14915 -13.89415 -13.49686 -13.38524 -13.10956 -12.95968 -12.85511 -12.69379 -12.55117 -12.32971 -11.91926 -11.82051 -11.73312 -11.45646 -11.38965 -11.17994 -11.01666 -10.67485 -10.53066 -10.46610 -10.26159 -10.07580 -9.23860 -9.06253 -9.02823 -8.58259 -8.36280 -7.99501 -7.10811 -6.21310 -4.27136 1.40716 1.98798 2.03053 2.65166 3.13635 3.19984 3.26754 3.32250 3.68756 3.71381 4.19106 4.29940 4.45075 4.89733 5.03704 5.12821 5.24689 5.30174 5.30393 5.38748 5.44623 5.55660 5.58179 5.64246 5.70460 5.80642 5.90352 5.95857 5.97452 6.08235 6.15617 6.24176 6.29736 6.38763 6.52885 6.75635 6.79749 6.93152 6.95451 7.12972 7.17006 7.31175 7.49888 7.60014 7.69846 7.78350 7.95911 8.02634 8.60712 8.78258 9.38221 10.85637 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.009709 B = 0.004898 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.325785 B = 5715.726424 C = 8068.043096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.025 3.975 3 O -0.102 6.102 4 C -0.066 4.066 5 C 0.602 3.398 6 O -0.528 6.528 7 N -0.526 5.526 8 C 0.223 3.777 9 C -0.528 4.528 10 H 0.059 0.941 11 C 0.072 3.928 12 N -0.889 5.889 13 Si 0.893 3.107 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.273 1.273 17 C 0.165 3.835 18 C -0.140 4.140 19 C -0.102 4.102 20 C -0.129 4.129 21 C -0.104 4.104 22 C -0.105 4.105 23 C -0.168 4.168 24 C -0.105 4.105 25 C -0.215 4.215 26 C 0.157 3.843 27 O -0.566 6.566 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.265 0.735 34 H 0.139 0.861 35 H 0.118 0.882 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.116 0.884 40 H 0.171 0.829 41 H 0.156 0.844 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.308 -7.242 -3.573 8.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.029 4.029 3 O 0.004 5.996 4 C -0.118 4.118 5 C 0.393 3.607 6 O -0.410 6.410 7 N -0.244 5.244 8 C 0.105 3.895 9 C -0.567 4.567 10 H 0.077 0.923 11 C -0.131 4.131 12 N -0.527 5.527 13 Si 0.720 3.280 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.198 1.198 17 C 0.069 3.931 18 C -0.160 4.160 19 C -0.121 4.121 20 C -0.130 4.130 21 C -0.161 4.161 22 C -0.124 4.124 23 C -0.187 4.187 24 C -0.126 4.126 25 C -0.216 4.216 26 C 0.079 3.921 27 O -0.371 6.371 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.156 0.844 35 H 0.136 0.864 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.134 0.866 40 H 0.187 0.813 41 H 0.174 0.826 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.820 -6.524 -3.561 7.949 hybrid contribution -0.891 -0.326 1.124 1.471 sum 1.928 -6.849 -2.437 7.521 Atomic orbital electron populations 1.20365 0.85250 1.04027 1.03803 1.22524 0.94360 0.84361 1.01689 1.84739 1.15105 1.31523 1.68186 1.21723 0.82758 0.93643 1.13688 1.16743 0.85990 0.81300 0.76635 1.90513 1.22067 1.76530 1.51853 1.45917 1.09216 1.04977 1.64302 1.19996 0.74654 0.95840 0.99039 1.21277 1.00663 1.43376 0.91343 0.92257 1.24806 0.96086 0.94901 0.97326 1.69923 1.09358 1.42737 1.30663 0.86561 0.77826 0.78828 0.84743 1.20402 1.20956 1.19830 1.18003 0.86945 0.90115 0.98014 1.21104 1.00289 0.91496 1.03094 1.20736 0.91641 0.99006 1.00717 1.19789 0.94847 0.94264 1.04142 1.20664 0.95662 0.98340 1.01418 1.20865 0.98253 0.92502 1.00767 1.22392 0.90670 1.03617 1.02067 1.21492 0.97835 0.92097 1.01158 1.19774 0.93492 0.94599 1.13784 1.20166 0.86961 0.85521 0.99407 1.86518 1.33096 1.19747 1.97722 0.89781 0.89467 0.89978 0.93297 0.92025 0.92559 0.84354 0.86392 0.92011 0.92171 0.92227 0.86640 0.81260 0.82631 0.92894 0.92821 0.77527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.21 36.00 0.37 -0.67 16 2 C 0.03 0.44 7.31 -35.41 -0.26 0.18 16 3 O -0.10 -2.21 6.70 4.99 0.03 -2.18 16 4 C -0.07 -1.41 6.78 -36.80 -0.25 -1.66 16 5 C 0.60 13.73 7.49 -12.88 -0.10 13.63 16 6 O -0.53 -12.11 13.38 5.18 0.07 -12.04 16 7 N -0.53 -12.13 2.70 -116.21 -0.31 -12.44 16 8 C 0.22 5.46 4.22 -5.20 -0.02 5.44 16 9 C -0.53 -13.94 8.64 -34.44 -0.30 -14.24 16 10 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 11 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 12 N -0.89 -23.72 13.29 55.43 0.74 -22.99 16 13 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 17 C 0.16 3.55 6.48 -83.72 -0.54 3.01 16 18 C -0.14 -2.80 9.15 -39.38 -0.36 -3.16 16 19 C -0.10 -1.74 9.69 -39.61 -0.38 -2.13 16 20 C -0.13 -2.06 5.88 -104.59 -0.62 -2.67 16 21 C -0.10 -1.25 10.01 36.01 0.36 -0.89 16 22 C -0.11 -1.78 9.69 -39.61 -0.38 -2.17 16 23 C -0.17 -3.35 8.97 -39.39 -0.35 -3.70 16 24 C -0.11 -2.01 9.98 -39.39 -0.39 -2.41 16 25 C -0.22 -3.58 6.10 -104.93 -0.64 -4.22 16 26 C 0.16 1.89 7.08 36.01 0.26 2.15 16 27 O -0.57 -6.87 13.08 -35.23 -0.46 -7.33 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.08 0.79 7.86 -51.93 -0.41 0.38 16 31 H 0.05 1.23 6.20 -51.93 -0.32 0.91 16 32 H 0.06 1.57 5.24 -51.93 -0.27 1.30 16 33 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.14 2.92 6.24 -52.49 -0.33 2.60 16 35 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 38 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 39 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.17 3.53 4.73 -55.14 -0.26 3.27 16 41 H 0.16 2.89 7.98 -52.48 -0.42 2.47 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.38 2.42 9.12 45.56 0.42 2.84 16 LS Contribution 369.64 15.07 5.57 5.57 Total: -1.00 -31.21 369.64 -8.04 -39.25 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -4.94 Total: 8.24 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -3.71 Total: -11.71 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.42 Total: -35.43 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.36 Total: -21.55 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.21 -8.04 -39.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865040228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.355 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds