Wall clock time and date at job start Sat Apr 11 2020 02:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33938 * 125.62012 * 2 1 4 4 C 1.34908 * 109.38840 * 180.27374 * 3 2 1 5 5 C 1.46619 * 125.99059 * 179.75474 * 4 3 2 6 6 O 1.21711 * 119.99738 * 174.12216 * 5 4 3 7 7 N 1.34770 * 119.99966 * 354.11991 * 5 4 3 8 8 C 1.46497 * 120.00261 * 5.74869 * 7 5 4 9 9 C 1.50700 * 109.47161 * 83.64365 * 8 7 5 10 10 H 1.07996 * 119.99922 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99579 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00389 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99656 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47354 * 89.99963 * 13 11 9 15 15 H 1.48501 * 109.47004 * 209.99823 * 13 11 9 16 16 H 1.48498 * 109.47114 * 329.99792 * 13 11 9 17 17 C 1.39830 * 119.99816 * 185.74591 * 7 5 4 18 18 C 1.38901 * 120.07054 * 187.82393 * 17 7 5 19 19 C 1.38111 * 119.92384 * 179.72202 * 18 17 7 20 20 C 1.38283 * 120.07331 * 0.57139 * 19 18 17 21 21 C 1.50700 * 119.92915 * 179.70393 * 20 19 18 22 22 C 1.38289 * 120.14806 * 359.67971 * 20 19 18 23 23 C 1.38106 * 120.07055 * 0.04055 * 22 20 19 24 24 C 1.36569 * 108.01884 * 359.73215 * 4 3 2 25 25 C 1.35132 * 125.61457 * 179.80962 * 2 1 3 26 26 C 1.50701 * 126.44236 * 359.97438 * 25 2 1 27 27 O 1.42902 * 109.47515 * 179.71763 * 26 25 2 28 28 H 1.08997 * 109.47174 * 270.19221 * 1 2 3 29 29 H 1.09003 * 109.47016 * 30.18880 * 1 2 3 30 30 H 1.08992 * 109.47365 * 150.19189 * 1 2 3 31 31 H 1.08998 * 109.47470 * 203.64723 * 8 7 5 32 32 H 1.09006 * 109.46871 * 323.64647 * 8 7 5 33 33 H 0.97003 * 119.99811 * 180.02562 * 12 11 9 34 34 H 1.07996 * 120.03858 * 359.97143 * 18 17 7 35 35 H 1.08000 * 119.96016 * 180.25449 * 19 18 17 36 36 H 1.08999 * 109.47166 * 269.97698 * 21 20 19 37 37 H 1.09004 * 109.47056 * 29.97637 * 21 20 19 38 38 H 1.08997 * 109.47643 * 149.97666 * 21 20 19 39 39 H 1.08001 * 119.96594 * 180.02562 * 22 20 19 40 40 H 1.08000 * 120.03820 * 179.97438 * 23 22 20 41 41 H 1.08004 * 126.64359 * 180.02562 * 24 4 3 42 42 H 1.09001 * 109.46719 * 59.71394 * 26 25 2 43 43 H 1.09007 * 109.47186 * 299.72114 * 26 25 2 44 44 H 0.96701 * 113.99658 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2871 1.0888 0.0000 4 6 3.5823 0.7117 -0.0061 5 6 4.7412 1.6099 -0.0132 6 8 5.8650 1.1541 0.0897 7 7 4.5619 2.9402 -0.1336 8 6 3.2082 3.5002 -0.1307 9 6 2.7431 3.6827 1.2911 10 1 3.3913 3.4093 2.1105 11 6 1.4901 4.1987 1.5456 12 7 0.7006 4.5311 0.5477 13 14 0.9139 4.4256 3.3079 14 1 1.2957 5.7797 3.7831 15 1 -0.5625 4.2777 3.3689 16 1 1.5502 3.3998 4.1727 17 6 5.6681 3.7859 -0.2612 18 6 5.4988 5.1640 -0.2221 19 6 6.5942 5.9965 -0.3428 20 6 7.8569 5.4596 -0.5142 21 6 9.0491 6.3711 -0.6521 22 6 8.0284 4.0881 -0.5587 23 6 6.9380 3.2500 -0.4330 24 6 3.6250 -0.6533 -0.0040 25 6 2.2939 -1.0986 0.0037 26 6 1.8296 -2.5323 0.0090 27 8 2.9646 -3.4006 0.0050 28 1 -0.3633 0.0034 1.0276 29 1 -0.3633 0.8883 -0.5168 30 1 -0.3634 -0.8916 -0.5108 31 1 3.2129 4.4648 -0.6381 32 1 2.5326 2.8200 -0.6495 33 1 -0.1807 4.8945 0.7268 34 1 4.5122 5.5840 -0.0935 35 1 6.4636 7.0680 -0.3083 36 1 9.2057 6.6077 -1.7045 37 1 8.8693 7.2911 -0.0958 38 1 9.9344 5.8740 -0.2558 39 1 9.0160 3.6720 -0.6923 40 1 7.0724 2.1790 -0.4683 41 1 4.5112 -1.2706 -0.0071 42 1 1.2243 -2.7214 -0.8776 43 1 1.2333 -2.7178 0.9024 44 1 2.7401 -4.3412 0.0077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865040228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:18:24 Heat of formation + Delta-G solvation = -47.326115 kcal Electronic energy + Delta-G solvation = -28342.984671 eV Core-core repulsion = 24419.953501 eV Total energy + Delta-G solvation = -3923.031169 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.74706 -41.65877 -39.46185 -37.89714 -37.19487 -34.76512 -34.42634 -33.25085 -32.49611 -31.84428 -29.46464 -29.01200 -27.70073 -26.25601 -25.39957 -23.51368 -23.36742 -22.14714 -21.64533 -20.44428 -18.90055 -18.35592 -18.27812 -18.06618 -17.50056 -17.01640 -16.55712 -16.20304 -16.08985 -15.65808 -15.46220 -15.21380 -14.84330 -14.62557 -14.52824 -14.43246 -14.38314 -14.00135 -13.95403 -13.74308 -13.38279 -13.23184 -12.98435 -12.91910 -12.78927 -12.68462 -12.53368 -12.35348 -12.21527 -11.96275 -11.88549 -11.45539 -10.85890 -10.71095 -10.57417 -10.48852 -9.83001 -9.39206 -8.69985 -8.22182 -6.36804 -0.15145 0.51735 0.57456 1.27905 1.34454 1.36583 1.46004 1.65484 2.05925 2.12633 2.37753 2.94697 3.06346 3.27821 3.41026 3.81313 3.99260 4.07764 4.08915 4.22583 4.35287 4.42320 4.45946 4.46562 4.56756 4.59265 4.64474 4.70857 4.73871 4.86722 4.88902 4.93765 4.96878 5.05718 5.17035 5.22344 5.25079 5.39846 5.49676 5.51778 5.62601 5.69508 5.77634 5.94115 6.05353 6.23729 6.28803 6.68309 6.92878 7.00781 7.31017 8.82835 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.009709 B = 0.004898 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.325785 B = 5715.726424 C = 8068.043096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.017 3.983 3 O -0.135 6.135 4 C -0.106 4.106 5 C 0.591 3.409 6 O -0.543 6.543 7 N -0.534 5.534 8 C 0.242 3.758 9 C -0.537 4.537 10 H 0.035 0.965 11 C 0.038 3.962 12 N -0.908 5.908 13 Si 0.949 3.051 14 H -0.274 1.274 15 H -0.268 1.268 16 H -0.282 1.282 17 C 0.127 3.873 18 C -0.157 4.157 19 C -0.101 4.101 20 C -0.117 4.117 21 C -0.102 4.102 22 C -0.103 4.103 23 C -0.182 4.182 24 C -0.101 4.101 25 C -0.213 4.213 26 C 0.159 3.841 27 O -0.590 6.590 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.126 0.874 31 H 0.034 0.966 32 H 0.051 0.949 33 H 0.270 0.730 34 H 0.117 0.883 35 H 0.147 0.853 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.147 0.853 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.335 -7.598 -3.302 8.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.036 4.036 3 O -0.030 6.030 4 C -0.158 4.158 5 C 0.384 3.616 6 O -0.427 6.427 7 N -0.252 5.252 8 C 0.123 3.877 9 C -0.575 4.575 10 H 0.053 0.947 11 C -0.164 4.164 12 N -0.546 5.546 13 Si 0.774 3.226 14 H -0.199 1.199 15 H -0.192 1.192 16 H -0.207 1.207 17 C 0.032 3.968 18 C -0.177 4.177 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.158 4.158 22 C -0.121 4.121 23 C -0.202 4.202 24 C -0.121 4.121 25 C -0.214 4.214 26 C 0.082 3.918 27 O -0.399 6.399 28 H 0.113 0.887 29 H 0.092 0.908 30 H 0.145 0.855 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.135 0.865 35 H 0.165 0.835 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.165 0.835 40 H 0.173 0.827 41 H 0.174 0.826 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 2.851 -6.891 -3.301 8.155 hybrid contribution -0.842 -0.243 0.999 1.329 sum 2.009 -7.134 -2.301 7.761 Atomic orbital electron populations 1.20610 0.82129 1.05525 1.04897 1.23466 0.96079 0.83719 1.00369 1.84663 1.15396 1.33726 1.69170 1.21688 0.82775 0.94318 1.17041 1.17042 0.86608 0.81446 0.76521 1.90480 1.22548 1.76741 1.52903 1.45866 1.09056 1.05413 1.64846 1.19582 0.75561 0.94670 0.97848 1.21231 1.00873 1.43995 0.91398 0.94653 1.25404 0.95881 0.94380 1.00718 1.69990 1.09681 1.42782 1.32169 0.85712 0.78054 0.78458 0.80399 1.19934 1.19231 1.20687 1.18363 0.87254 0.90702 1.00448 1.21085 1.00552 0.91397 1.04672 1.21094 0.91239 1.00104 0.99461 1.20286 0.95863 0.94495 1.01157 1.20750 0.94008 0.98020 1.03023 1.21236 0.98559 0.92928 0.99387 1.22364 0.91070 1.03528 1.03204 1.21700 0.99358 0.91194 0.99898 1.20321 0.91824 0.97163 1.12082 1.20316 0.87036 0.82531 1.01955 1.86452 1.33765 1.21828 1.97861 0.88667 0.90848 0.85543 0.94852 0.93208 0.92037 0.86494 0.83531 0.90162 0.90669 0.90540 0.83508 0.82658 0.82620 0.89836 0.90371 0.74592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.88 10.21 71.24 0.73 -1.15 16 2 C 0.02 0.61 7.31 24.97 0.18 0.79 16 3 O -0.13 -6.14 6.70 -5.05 -0.03 -6.17 16 4 C -0.11 -4.88 6.78 24.07 0.16 -4.72 16 5 C 0.59 29.11 7.49 86.43 0.65 29.76 16 6 O -0.54 -26.76 13.38 -4.38 -0.06 -26.82 16 7 N -0.53 -26.60 2.70 -639.81 -1.73 -28.33 16 8 C 0.24 12.78 4.22 85.63 0.36 13.14 16 9 C -0.54 -29.90 8.64 25.60 0.22 -29.68 16 10 H 0.04 2.09 7.81 -2.91 -0.02 2.07 16 11 C 0.04 2.02 5.46 84.66 0.46 2.48 16 12 N -0.91 -49.51 13.29 21.45 0.28 -49.23 16 13 Si 0.95 42.87 29.54 68.60 2.03 44.90 16 14 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 15 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 16 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 17 C 0.13 5.82 6.48 38.18 0.25 6.06 16 18 C -0.16 -6.60 9.15 22.40 0.21 -6.40 16 19 C -0.10 -3.36 9.69 22.25 0.22 -3.15 16 20 C -0.12 -3.48 5.88 -19.84 -0.12 -3.60 16 21 C -0.10 -2.02 10.01 71.24 0.71 -1.31 16 22 C -0.10 -3.38 9.69 22.25 0.22 -3.16 16 23 C -0.18 -7.55 8.97 22.40 0.20 -7.35 16 24 C -0.10 -3.98 9.98 22.40 0.22 -3.76 16 25 C -0.21 -6.91 6.10 -20.06 -0.12 -7.03 16 26 C 0.16 3.35 7.08 71.24 0.50 3.85 16 27 O -0.59 -12.93 13.08 -148.98 -1.95 -14.88 16 28 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.13 1.97 7.86 -2.39 -0.02 1.95 16 31 H 0.03 1.83 6.20 -2.39 -0.01 1.81 16 32 H 0.05 2.75 5.24 -2.38 -0.01 2.74 16 33 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 34 H 0.12 5.34 6.24 -2.91 -0.02 5.32 16 35 H 0.15 3.97 8.06 -2.91 -0.02 3.94 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 1.32 8.08 -2.39 -0.02 1.30 16 38 H 0.08 1.32 8.08 -2.39 -0.02 1.30 16 39 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 40 H 0.16 6.88 4.73 -45.01 -0.21 6.67 16 41 H 0.16 6.01 7.98 -2.91 -0.02 5.99 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.40 3.99 9.12 -74.06 -0.68 3.31 16 Total: -1.00 -72.55 369.64 3.77 -68.78 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 0.17 Total: 26.96 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 5.05 Total: -15.22 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -1.44 Total: -77.55 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: -2.04 Total: -47.88 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -72.55 3.77 -68.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865040228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.458 kcal (2) G-P(sol) polarization free energy of solvation -72.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds