Wall clock time and date at job start Sat Apr 11 2020 02:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86800 * 120.00059 * 2 1 4 4 H 1.48505 * 109.47199 * 239.99461 * 3 2 1 5 5 H 1.48505 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47531 * 119.99722 * 3 2 1 7 7 C 1.39938 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99843 * 162.61558 * 7 2 1 9 9 C 1.41438 * 120.00322 * 342.61450 * 7 2 1 10 10 C 1.40775 * 120.17983 * 154.90692 * 9 7 2 11 11 C 1.37709 * 120.04390 * 180.02562 * 10 9 7 12 12 C 1.38377 * 120.40889 * 359.78483 * 11 10 9 13 13 C 1.39882 * 120.35320 * 0.47435 * 12 11 10 14 14 C 1.47889 * 120.02214 * 179.78849 * 13 12 11 15 15 O 1.21548 * 120.00388 * 179.72489 * 14 13 12 16 16 N 1.34784 * 120.00075 * 359.71448 * 14 13 12 17 17 C 1.46498 * 120.00164 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47111 * 180.02562 * 17 16 14 19 19 H 1.08995 * 109.47173 * 305.00116 * 18 17 16 20 20 C 1.52998 * 109.47154 * 65.00085 * 18 17 16 21 21 O 1.42892 * 109.47186 * 184.99739 * 20 18 17 22 22 C 1.52998 * 109.46867 * 185.00133 * 18 17 16 23 23 C 1.50706 * 109.47055 * 175.00088 * 22 18 17 24 24 C 1.41380 * 126.57696 * 269.71376 * 23 22 18 25 25 C 1.34518 * 106.83877 * 179.83302 * 24 23 22 26 26 O 1.34300 * 108.41999 * 0.42690 * 25 24 23 27 27 C 1.34305 * 109.47568 * 359.72427 * 26 25 24 28 28 C 1.39028 * 119.95384 * 359.50492 * 13 12 11 29 29 H 0.96996 * 119.99976 * 0.02562 * 1 2 3 30 30 H 1.08008 * 119.98033 * 0.02562 * 10 9 7 31 31 H 1.07991 * 119.80036 * 180.02562 * 11 10 9 32 32 H 1.07994 * 119.82448 * 180.23338 * 12 11 10 33 33 H 0.96998 * 119.99759 * 0.02562 * 16 14 13 34 34 H 1.09003 * 109.47109 * 300.00352 * 17 16 14 35 35 H 1.09000 * 109.47116 * 60.00052 * 17 16 14 36 36 H 1.09006 * 109.47122 * 305.00010 * 20 18 17 37 37 H 1.09006 * 109.47240 * 64.99920 * 20 18 17 38 38 H 0.96704 * 114.00533 * 179.97438 * 21 20 18 39 39 H 1.09005 * 109.47071 * 294.99700 * 22 18 17 40 40 H 1.09000 * 109.47557 * 54.99989 * 22 18 17 41 41 H 1.08004 * 126.57935 * 359.97438 * 24 23 22 42 42 H 1.07996 * 125.78876 * 180.11183 * 25 24 23 43 43 H 1.08003 * 125.78951 * 180.02562 * 27 26 25 44 44 H 1.07996 * 120.20218 * 180.23294 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0510 -1.2333 -0.2789 9 6 1.3493 -2.4087 0.3671 10 6 1.8188 -3.6485 -0.1064 11 6 1.1751 -4.8119 0.2518 12 6 0.0678 -4.7731 1.0808 13 6 -0.4164 -3.5501 1.5566 14 6 -1.6031 -3.5167 2.4385 15 8 -2.0206 -2.4542 2.8558 16 7 -2.2220 -4.6645 2.7792 17 6 -3.3979 -4.6314 3.6523 18 6 -3.9032 -6.0573 3.8815 19 1 -4.0891 -6.5358 2.9201 20 6 -2.8490 -6.8542 4.6525 21 8 -3.2691 -8.2153 4.7653 22 6 -5.2018 -6.0144 4.6894 23 6 -5.7645 -7.4073 4.8103 24 6 -6.6737 -8.0285 3.9236 25 6 -6.9056 -9.2630 4.4050 26 8 -6.1963 -9.4181 5.5348 27 6 -5.5024 -8.2958 5.7855 28 6 0.2224 -2.3664 1.2048 29 1 -0.4850 0.8400 -0.0004 30 1 2.6846 -3.6872 -0.7511 31 1 1.5389 -5.7609 -0.1134 32 1 -0.4275 -5.6916 1.3587 33 1 -1.8888 -5.5125 2.4464 34 1 -3.1278 -4.1839 4.6088 35 1 -4.1827 -4.0386 3.1825 36 1 -1.8989 -6.8101 4.1200 37 1 -2.7275 -6.4277 5.6483 38 1 -2.6471 -8.7806 5.2436 39 1 -4.9981 -5.6173 5.6839 40 1 -5.9238 -5.3736 4.1832 41 1 -7.0987 -7.5957 3.0299 42 1 -7.5561 -10.0020 3.9611 43 1 -4.8450 -8.1344 6.6271 44 1 -0.1458 -1.4202 1.5730 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881723018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:18:40 Heat of formation + Delta-G solvation = -60.229870 kcal Electronic energy + Delta-G solvation = -26931.011262 eV Core-core repulsion = 23007.420544 eV Total energy + Delta-G solvation = -3923.590718 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.54034 -39.39888 -37.97780 -36.95551 -35.30621 -34.01225 -33.68176 -31.84556 -30.21502 -29.50754 -29.38476 -26.34889 -25.89295 -25.14000 -22.39347 -21.64433 -21.06630 -20.72793 -20.22475 -19.44235 -17.92498 -17.56452 -17.21806 -16.14619 -16.10286 -15.70554 -15.45124 -15.07736 -14.86597 -14.63728 -14.48838 -14.03821 -13.75007 -13.24485 -13.19282 -12.88882 -12.81678 -12.69121 -12.50999 -12.47271 -12.00122 -11.81253 -11.64679 -11.30002 -11.16854 -11.09380 -10.81191 -10.74470 -10.51854 -10.25098 -10.04818 -9.71300 -9.58420 -9.22524 -9.04613 -8.69210 -8.34183 -7.64792 -7.53642 -6.81049 -4.43038 1.81762 2.19208 2.61783 2.80708 3.06653 3.08322 3.13577 3.15328 3.67233 3.84727 3.91105 4.01739 4.58064 4.63174 4.73115 4.80640 4.87730 5.06597 5.23042 5.31645 5.39223 5.47153 5.56009 5.58980 5.64619 5.75080 5.77717 5.89934 5.99827 6.06814 6.13078 6.21708 6.25255 6.52259 6.69915 6.82149 6.97208 7.00006 7.12462 7.19679 7.36361 7.44381 7.68049 7.73701 7.90455 8.06597 8.17211 8.48795 8.78687 8.81741 8.92741 10.13778 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.026113 B = 0.002227 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.999977 B =12571.984316 C =13187.946506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.211 4.211 11 C -0.098 4.098 12 C -0.218 4.218 13 C -0.128 4.128 14 C 0.564 3.436 15 O -0.546 6.546 16 N -0.738 5.738 17 C 0.127 3.873 18 C -0.093 4.093 19 H 0.086 0.914 20 C 0.078 3.922 21 O -0.559 6.559 22 C -0.039 4.039 23 C -0.169 4.169 24 C -0.205 4.205 25 C -0.056 4.056 26 O -0.184 6.184 27 C 0.000 4.000 28 C -0.092 4.092 29 H 0.285 0.715 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.399 0.601 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.369 0.631 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.141 0.859 42 H 0.195 0.805 43 H 0.192 0.808 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.838 -14.549 9.735 20.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.231 4.231 11 C -0.116 4.116 12 C -0.238 4.238 13 C -0.131 4.131 14 C 0.354 3.646 15 O -0.424 6.424 16 N -0.393 5.393 17 C 0.002 3.998 18 C -0.111 4.111 19 H 0.104 0.896 20 C 0.000 4.000 21 O -0.363 6.363 22 C -0.077 4.077 23 C -0.171 4.171 24 C -0.224 4.224 25 C -0.123 4.123 26 O -0.080 6.080 27 C -0.067 4.067 28 C -0.112 4.112 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.235 0.765 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.216 0.784 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.159 0.841 42 H 0.211 0.789 43 H 0.209 0.791 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.880 -13.620 9.865 20.030 hybrid contribution 1.001 0.227 -0.222 1.050 sum -9.879 -13.393 9.644 19.234 Atomic orbital electron populations 1.69777 1.07571 1.29899 1.33537 1.25967 0.94785 1.01549 0.92320 0.86318 0.80101 0.80084 0.79976 1.18963 1.20216 1.18716 1.19557 0.98039 0.91010 1.40308 0.90104 1.17602 0.91216 0.92470 0.89108 1.21101 1.03484 0.92814 1.05709 1.20435 0.96097 0.96739 0.98342 1.20329 1.01442 0.94594 1.07482 1.19468 0.96548 0.95312 1.01795 1.18854 0.83273 0.82779 0.79677 1.90697 1.66435 1.30087 1.55141 1.45999 1.31132 1.09880 1.52298 1.21233 0.88538 0.95052 0.94934 1.21419 0.94730 0.94579 1.00419 0.89614 1.22216 0.96472 0.82470 0.98843 1.86775 1.49166 1.20118 1.80287 1.19866 0.95260 0.92223 1.00325 1.20072 1.01962 0.98070 0.96948 1.21684 1.02825 0.95512 1.02383 1.23804 1.00776 0.99162 0.88569 1.84024 1.48270 1.37654 1.38040 1.23523 0.97748 0.83945 1.01512 1.21635 0.96431 0.96425 0.96754 0.90363 0.88605 0.88916 0.89359 0.76549 0.91616 0.91109 0.93406 0.93587 0.78409 0.91066 0.90702 0.84118 0.78852 0.79086 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.75 10.97 55.55 0.61 -20.14 16 2 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 3 Si 0.91 18.73 29.59 -169.99 -5.03 13.70 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.46 -12.05 9.05 -37.73 -0.34 -12.39 16 8 H 0.08 2.00 7.90 -52.48 -0.41 1.59 16 9 C 0.10 2.60 5.57 -106.87 -0.59 2.00 16 10 C -0.21 -4.99 9.78 -38.82 -0.38 -5.37 16 11 C -0.10 -2.07 10.01 -39.72 -0.40 -2.47 16 12 C -0.22 -4.55 9.55 -38.92 -0.37 -4.92 16 13 C -0.13 -3.00 5.87 -105.04 -0.62 -3.62 16 14 C 0.56 12.16 7.77 -12.31 -0.10 12.07 16 15 O -0.55 -13.55 16.33 5.32 0.09 -13.46 16 16 N -0.74 -11.84 5.18 -61.23 -0.32 -12.16 16 17 C 0.13 1.67 5.06 -4.04 -0.02 1.65 16 18 C -0.09 -0.96 2.26 -90.62 -0.20 -1.17 16 19 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 20 C 0.08 0.72 6.32 37.16 0.23 0.95 16 21 O -0.56 -4.87 9.27 -35.23 -0.33 -5.19 16 22 C -0.04 -0.37 5.21 -27.88 -0.15 -0.51 16 23 C -0.17 -1.73 4.44 -104.74 -0.46 -2.20 16 24 C -0.20 -2.08 10.87 -39.70 -0.43 -2.51 16 25 C -0.06 -0.52 12.09 29.42 0.36 -0.16 16 26 O -0.18 -1.90 10.65 5.71 0.06 -1.84 16 27 C 0.00 0.00 9.23 29.41 0.27 0.28 16 28 C -0.09 -2.45 8.23 -38.44 -0.32 -2.77 16 29 H 0.29 6.96 8.30 -40.82 -0.34 6.62 16 30 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 31 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.09 1.52 6.38 -52.49 -0.33 1.18 16 33 H 0.40 5.64 5.67 -40.82 -0.23 5.41 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.47 7.07 -51.93 -0.37 0.10 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.37 1.89 9.12 45.56 0.42 2.31 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 42 H 0.19 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.19 1.32 7.89 -52.48 -0.41 0.91 16 44 H 0.13 3.83 5.76 -52.49 -0.30 3.53 16 LS Contribution 368.95 15.07 5.56 5.56 Total: -1.00 -31.87 368.95 -7.98 -39.84 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -5.01 Total: 13.07 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -3.61 Total: -19.38 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.29 Total: -32.30 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.18 Total: -20.50 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.87 -7.98 -39.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881723018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.386 kcal (2) G-P(sol) polarization free energy of solvation -31.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds