Wall clock time and date at job start Sat Apr 11 2020 02:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86800 * 120.00059 * 2 1 4 4 H 1.48505 * 109.47199 * 239.99461 * 3 2 1 5 5 H 1.48505 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47531 * 119.99722 * 3 2 1 7 7 C 1.39938 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99843 * 162.61558 * 7 2 1 9 9 C 1.41438 * 120.00322 * 342.61450 * 7 2 1 10 10 C 1.40775 * 120.17983 * 154.90692 * 9 7 2 11 11 C 1.37709 * 120.04390 * 180.02562 * 10 9 7 12 12 C 1.38377 * 120.40889 * 359.78483 * 11 10 9 13 13 C 1.39882 * 120.35320 * 0.47435 * 12 11 10 14 14 C 1.47889 * 120.02214 * 179.78849 * 13 12 11 15 15 O 1.21548 * 120.00388 * 179.72489 * 14 13 12 16 16 N 1.34784 * 120.00075 * 359.71448 * 14 13 12 17 17 C 1.46498 * 120.00164 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47111 * 180.02562 * 17 16 14 19 19 H 1.08995 * 109.47173 * 305.00116 * 18 17 16 20 20 C 1.52998 * 109.47154 * 65.00085 * 18 17 16 21 21 O 1.42892 * 109.47186 * 184.99739 * 20 18 17 22 22 C 1.52998 * 109.46867 * 185.00133 * 18 17 16 23 23 C 1.50706 * 109.47055 * 175.00088 * 22 18 17 24 24 C 1.41380 * 126.57696 * 269.71376 * 23 22 18 25 25 C 1.34518 * 106.83877 * 179.83302 * 24 23 22 26 26 O 1.34300 * 108.41999 * 0.42690 * 25 24 23 27 27 C 1.34305 * 109.47568 * 359.72427 * 26 25 24 28 28 C 1.39028 * 119.95384 * 359.50492 * 13 12 11 29 29 H 0.96996 * 119.99976 * 0.02562 * 1 2 3 30 30 H 1.08008 * 119.98033 * 0.02562 * 10 9 7 31 31 H 1.07991 * 119.80036 * 180.02562 * 11 10 9 32 32 H 1.07994 * 119.82448 * 180.23338 * 12 11 10 33 33 H 0.96998 * 119.99759 * 0.02562 * 16 14 13 34 34 H 1.09003 * 109.47109 * 300.00352 * 17 16 14 35 35 H 1.09000 * 109.47116 * 60.00052 * 17 16 14 36 36 H 1.09006 * 109.47122 * 305.00010 * 20 18 17 37 37 H 1.09006 * 109.47240 * 64.99920 * 20 18 17 38 38 H 0.96704 * 114.00533 * 179.97438 * 21 20 18 39 39 H 1.09005 * 109.47071 * 294.99700 * 22 18 17 40 40 H 1.09000 * 109.47557 * 54.99989 * 22 18 17 41 41 H 1.08004 * 126.57935 * 359.97438 * 24 23 22 42 42 H 1.07996 * 125.78876 * 180.11183 * 25 24 23 43 43 H 1.08003 * 125.78951 * 180.02562 * 27 26 25 44 44 H 1.07996 * 120.20218 * 180.23294 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0510 -1.2333 -0.2789 9 6 1.3493 -2.4087 0.3671 10 6 1.8188 -3.6485 -0.1064 11 6 1.1751 -4.8119 0.2518 12 6 0.0678 -4.7731 1.0808 13 6 -0.4164 -3.5501 1.5566 14 6 -1.6031 -3.5167 2.4385 15 8 -2.0206 -2.4542 2.8558 16 7 -2.2220 -4.6645 2.7792 17 6 -3.3979 -4.6314 3.6523 18 6 -3.9032 -6.0573 3.8815 19 1 -4.0891 -6.5358 2.9201 20 6 -2.8490 -6.8542 4.6525 21 8 -3.2691 -8.2153 4.7653 22 6 -5.2018 -6.0144 4.6894 23 6 -5.7645 -7.4073 4.8103 24 6 -6.6737 -8.0285 3.9236 25 6 -6.9056 -9.2630 4.4050 26 8 -6.1963 -9.4181 5.5348 27 6 -5.5024 -8.2958 5.7855 28 6 0.2224 -2.3664 1.2048 29 1 -0.4850 0.8400 -0.0004 30 1 2.6846 -3.6872 -0.7511 31 1 1.5389 -5.7609 -0.1134 32 1 -0.4275 -5.6916 1.3587 33 1 -1.8888 -5.5125 2.4464 34 1 -3.1278 -4.1839 4.6088 35 1 -4.1827 -4.0386 3.1825 36 1 -1.8989 -6.8101 4.1200 37 1 -2.7275 -6.4277 5.6483 38 1 -2.6471 -8.7806 5.2436 39 1 -4.9981 -5.6173 5.6839 40 1 -5.9238 -5.3736 4.1832 41 1 -7.0987 -7.5957 3.0299 42 1 -7.5561 -10.0020 3.9611 43 1 -4.8450 -8.1344 6.6271 44 1 -0.1458 -1.4202 1.5730 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881723018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:18:39 Heat of formation + Delta-G solvation = -81.246799 kcal Electronic energy + Delta-G solvation = -26931.922624 eV Core-core repulsion = 23007.420544 eV Total energy + Delta-G solvation = -3924.502081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.24681 -40.98181 -39.12398 -38.51956 -36.28771 -35.62296 -34.97357 -32.95432 -31.79728 -31.27535 -30.28834 -27.47172 -27.03448 -26.64024 -23.98828 -22.81288 -22.35520 -21.73282 -21.36514 -20.70819 -19.51922 -18.48148 -18.05100 -17.70786 -17.20424 -16.81709 -16.68544 -16.50706 -16.38096 -15.91980 -15.43797 -15.24341 -15.12371 -14.96852 -14.41071 -14.26953 -13.99205 -13.78368 -13.53130 -13.51227 -13.44087 -12.94971 -12.87148 -12.80400 -12.57294 -12.51947 -12.23719 -12.15291 -11.91031 -11.57884 -11.51603 -11.07161 -10.93445 -10.80631 -10.31445 -10.14961 -9.47380 -9.38980 -9.03948 -8.66624 -6.38714 0.37429 1.00732 1.12781 1.36182 1.47675 1.50482 1.86321 2.09448 2.19198 2.27803 2.50248 2.78605 3.27834 3.69158 3.75704 3.94019 4.02699 4.12310 4.19019 4.32102 4.40673 4.51295 4.53187 4.57556 4.59845 4.67506 4.76033 4.82977 4.92227 4.98967 5.03853 5.08541 5.18556 5.19718 5.30773 5.36710 5.45169 5.51866 5.52025 5.81856 5.85798 5.91850 6.04737 6.28150 6.42143 6.49483 6.66712 6.87520 6.94114 6.97182 7.29428 8.30137 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.026113 B = 0.002227 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.999977 B =12571.984316 C =13187.946506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.029 3.971 3 Si 0.983 3.017 4 H -0.252 1.252 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.498 4.498 8 H 0.084 0.916 9 C 0.066 3.934 10 C -0.216 4.216 11 C -0.096 4.096 12 C -0.197 4.197 13 C -0.139 4.139 14 C 0.560 3.440 15 O -0.588 6.588 16 N -0.713 5.713 17 C 0.127 3.873 18 C -0.079 4.079 19 H 0.076 0.924 20 C 0.082 3.918 21 O -0.567 6.567 22 C -0.036 4.036 23 C -0.186 4.186 24 C -0.229 4.229 25 C -0.057 4.057 26 O -0.195 6.195 27 C 0.001 3.999 28 C -0.131 4.131 29 H 0.287 0.713 30 H 0.108 0.892 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.411 0.589 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.044 0.956 37 H 0.058 0.942 38 H 0.387 0.613 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.144 0.856 42 H 0.223 0.777 43 H 0.214 0.786 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.666 -17.209 10.317 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.803 3.197 4 H -0.176 1.176 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.527 4.527 8 H 0.102 0.898 9 C 0.064 3.936 10 C -0.236 4.236 11 C -0.114 4.114 12 C -0.217 4.217 13 C -0.142 4.142 14 C 0.350 3.650 15 O -0.469 6.469 16 N -0.366 5.366 17 C 0.003 3.997 18 C -0.098 4.098 19 H 0.095 0.905 20 C 0.004 3.996 21 O -0.375 6.375 22 C -0.074 4.074 23 C -0.187 4.187 24 C -0.248 4.248 25 C -0.124 4.124 26 O -0.091 6.091 27 C -0.066 4.066 28 C -0.152 4.152 29 H 0.097 0.903 30 H 0.127 0.873 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.249 0.751 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.236 0.764 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.162 0.838 42 H 0.239 0.761 43 H 0.231 0.769 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.706 -16.359 10.452 22.169 hybrid contribution 0.868 0.787 -0.367 1.228 sum -9.838 -15.571 10.085 20.999 Atomic orbital electron populations 1.69882 1.09241 1.30675 1.35356 1.26863 0.95425 1.04980 0.91344 0.85239 0.78697 0.75445 0.80294 1.17631 1.19704 1.18441 1.19840 0.98433 0.92152 1.42266 0.89762 1.17958 0.91843 0.93951 0.89849 1.21410 1.03900 0.92828 1.05467 1.20924 0.95418 0.97700 0.97356 1.20829 1.00604 0.95079 1.05181 1.19780 0.97008 0.95476 1.01911 1.18720 0.83173 0.83565 0.79539 1.90675 1.67516 1.31969 1.56772 1.45787 1.30928 1.08638 1.51293 1.21387 0.86983 0.97165 0.94140 1.21256 0.95575 0.92504 1.00487 0.90528 1.22107 0.95434 0.82872 0.99175 1.86733 1.50057 1.19930 1.80742 1.19829 0.94585 0.92220 1.00727 1.20200 1.02586 0.98397 0.97564 1.21934 1.03574 0.96290 1.03001 1.24377 1.00453 0.99527 0.88015 1.84034 1.48543 1.38091 1.38472 1.23946 0.97487 0.83415 1.01796 1.21447 0.98267 0.96441 0.99037 0.90298 0.87341 0.84392 0.84794 0.75083 0.91418 0.92034 0.93756 0.92387 0.76414 0.89894 0.91041 0.83780 0.76084 0.76917 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.31 10.97 21.82 0.24 -46.07 16 2 C 0.03 1.51 5.14 85.25 0.44 1.95 16 3 Si 0.98 39.68 29.59 68.60 2.03 41.71 16 4 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 6 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.50 -27.12 9.05 23.47 0.21 -26.91 16 8 H 0.08 4.31 7.90 -2.91 -0.02 4.29 16 9 C 0.07 3.60 5.57 -21.32 -0.12 3.49 16 10 C -0.22 -10.07 9.78 22.77 0.22 -9.85 16 11 C -0.10 -3.77 10.01 22.18 0.22 -3.55 16 12 C -0.20 -7.65 9.55 22.70 0.22 -7.44 16 13 C -0.14 -6.51 5.87 -20.13 -0.12 -6.63 16 14 C 0.56 24.28 7.77 86.80 0.67 24.96 16 15 O -0.59 -30.28 16.33 -3.87 -0.06 -30.34 16 16 N -0.71 -21.77 5.18 -465.92 -2.42 -24.19 16 17 C 0.13 3.19 5.06 86.38 0.44 3.62 16 18 C -0.08 -1.49 2.26 -10.79 -0.02 -1.51 16 19 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 20 C 0.08 1.28 6.32 71.98 0.45 1.73 16 21 O -0.57 -8.13 9.27 -148.98 -1.38 -9.51 16 22 C -0.04 -0.62 5.21 29.85 0.16 -0.46 16 23 C -0.19 -3.47 4.44 -19.94 -0.09 -3.56 16 24 C -0.23 -4.32 10.87 22.19 0.24 -4.07 16 25 C -0.06 -0.94 12.09 66.97 0.81 -0.13 16 26 O -0.20 -3.62 10.65 -2.47 -0.03 -3.65 16 27 C 0.00 0.01 9.23 66.97 0.62 0.63 16 28 C -0.13 -7.30 8.23 23.01 0.19 -7.11 16 29 H 0.29 14.84 8.30 -92.71 -0.77 14.07 16 30 H 0.11 4.66 8.06 -2.91 -0.02 4.63 16 31 H 0.14 4.20 8.06 -2.92 -0.02 4.18 16 32 H 0.13 3.93 6.38 -2.91 -0.02 3.91 16 33 H 0.41 10.38 5.67 -92.71 -0.53 9.85 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.04 0.72 7.07 -2.38 -0.02 0.70 16 37 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.39 2.65 9.12 -74.05 -0.68 1.98 16 39 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 41 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 42 H 0.22 2.03 8.06 -2.91 -0.02 2.00 16 43 H 0.21 2.30 7.89 -2.91 -0.02 2.28 16 44 H 0.10 6.11 5.76 -2.91 -0.02 6.10 16 Total: -1.00 -73.32 368.95 2.77 -70.55 By element: Atomic # 1 Polarization: 36.50 SS G_CDS: -0.16 Total: 36.34 kcal Atomic # 6 Polarization: -39.38 SS G_CDS: 4.54 Total: -34.84 kcal Atomic # 7 Polarization: -68.09 SS G_CDS: -2.18 Total: -70.26 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -1.47 Total: -43.50 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -73.32 2.77 -70.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881723018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.695 kcal (2) G-P(sol) polarization free energy of solvation -73.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds