Wall clock time and date at job start Sat Apr 11 2020 02:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86803 * 119.99916 * 2 1 4 4 H 1.48505 * 109.47123 * 239.99615 * 3 2 1 5 5 H 1.48508 * 109.47093 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47412 * 119.99198 * 3 2 1 7 7 C 1.40022 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99888 * 180.02562 * 7 2 1 9 9 C 1.41313 * 119.99913 * 0.02562 * 7 2 1 10 10 C 1.40592 * 119.78455 * 179.97438 * 9 7 2 11 11 C 1.38351 * 119.14782 * 180.02562 * 10 9 7 12 12 C 1.38629 * 118.67837 * 359.97438 * 11 10 9 13 13 C 1.39760 * 119.49676 * 0.02562 * 12 11 10 14 14 N 1.38822 * 119.58648 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00327 * 359.97438 * 14 13 12 16 16 C 1.50693 * 109.47461 * 180.02562 * 15 14 13 17 17 C 1.33637 * 126.03703 * 89.95960 * 16 15 14 18 18 N 1.31789 * 114.50004 * 180.02562 * 17 16 15 19 19 C 1.29022 * 117.12256 * 359.97438 * 18 17 16 20 20 C 1.50701 * 124.91373 * 180.26689 * 19 18 17 21 21 C 1.54265 * 110.03555 * 56.86265 * 20 19 18 22 22 C 1.54883 * 104.19744 * 217.10714 * 21 20 19 23 23 C 1.54890 * 102.74851 * 37.94183 * 22 21 20 24 24 C 1.53882 * 110.03288 * 299.69597 * 20 19 18 25 25 S 1.70978 * 110.16886 * 0.02562 * 19 18 17 26 26 N 1.31973 * 120.82657 * 0.25065 * 13 12 11 27 27 H 0.96998 * 120.00675 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.42370 * 0.02562 * 10 9 7 29 29 H 1.07998 * 120.65858 * 179.97438 * 11 10 9 30 30 H 1.08010 * 120.25187 * 180.02562 * 12 11 10 31 31 H 0.97001 * 120.00264 * 179.97438 * 14 13 12 32 32 H 1.09002 * 109.47185 * 60.00101 * 15 14 13 33 33 H 1.09005 * 109.47045 * 300.00629 * 15 14 13 34 34 H 1.08002 * 122.75102 * 0.02562 * 17 16 15 35 35 H 1.08998 * 110.01688 * 178.31104 * 20 19 18 36 36 H 1.09001 * 110.48306 * 335.78370 * 21 20 19 37 37 H 1.09004 * 110.48742 * 98.42604 * 21 20 19 38 38 H 1.09001 * 110.75623 * 279.62628 * 22 21 20 39 39 H 1.09003 * 110.91530 * 156.32793 * 22 21 20 40 40 H 1.09005 * 110.48585 * 203.38021 * 23 22 21 41 41 H 1.09001 * 110.60132 * 80.79741 * 23 22 21 42 42 H 1.09000 * 110.03511 * 238.57149 * 24 20 19 43 43 H 1.08999 * 110.02893 * 0.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0950 1.6966 1.2126 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2125 0.0010 9 6 1.3010 -2.4364 0.0005 10 6 2.0086 -3.6513 0.0005 11 6 1.3037 -4.8417 0.0000 12 6 -0.0818 -4.7944 0.0000 13 6 -0.7280 -3.5552 0.0000 14 7 -2.1154 -3.5056 -0.0005 15 6 -2.8928 -4.7474 -0.0016 16 6 -4.3636 -4.4193 -0.0026 17 6 -5.1299 -4.2469 -1.0838 18 7 -6.3903 -3.9656 -0.8211 19 6 -6.7298 -3.8916 0.4215 20 6 -8.1194 -3.5876 0.9193 21 6 -9.1218 -4.6104 0.3459 22 6 -10.3990 -3.7782 0.0722 23 6 -9.8273 -2.4341 -0.4430 24 6 -8.5681 -2.2038 0.4177 25 16 -5.3765 -4.1948 1.4215 26 7 -0.0359 -2.4315 -0.0049 27 1 -0.4851 0.8400 -0.0004 28 1 3.0886 -3.6552 0.0010 29 1 1.8224 -5.7890 -0.0004 30 1 -0.6575 -5.7083 0.0000 31 1 -2.5701 -2.6488 -0.0001 32 1 -2.6504 -5.3286 0.8881 33 1 -2.6496 -5.3275 -0.8919 34 1 -4.7477 -4.3313 -2.0904 35 1 -8.1396 -3.6143 2.0088 36 1 -8.7405 -5.0399 -0.5806 37 1 -9.3262 -5.3944 1.0752 38 1 -10.9674 -3.6296 0.9904 39 1 -11.0168 -4.2528 -0.6902 40 1 -10.5467 -1.6296 -0.2895 41 1 -9.5604 -2.5097 -1.4972 42 1 -8.8068 -1.5593 1.2637 43 1 -7.7809 -1.7523 -0.1861 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883356809.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:18:46 Heat of formation + Delta-G solvation = 68.328777 kcal Electronic energy + Delta-G solvation = -24132.582812 eV Core-core repulsion = 20689.612437 eV Total energy + Delta-G solvation = -3442.970375 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.06285 -38.34125 -37.89949 -35.32574 -33.36081 -31.62350 -30.41444 -29.67033 -28.95561 -28.04488 -25.48549 -25.31166 -23.79132 -21.56138 -21.22671 -20.87632 -20.41862 -18.64626 -18.26214 -17.36579 -16.43197 -16.12216 -15.51447 -15.08262 -14.81931 -14.66494 -14.39839 -14.10015 -13.76842 -13.56644 -13.45838 -13.22162 -13.14495 -12.51566 -12.13452 -11.87320 -11.75153 -11.53507 -11.35667 -11.34167 -11.32361 -11.12083 -11.00969 -10.97020 -10.80099 -10.64654 -10.46857 -9.96880 -9.62698 -9.48096 -9.28838 -8.92060 -8.82153 -7.92572 -7.52026 -6.56104 -6.32996 -4.48091 0.62963 1.29198 1.74033 2.77741 2.88574 3.10543 3.13053 3.22520 3.29791 3.90979 3.98335 4.29355 4.35954 4.40343 4.58422 4.83494 4.90782 5.00610 5.17608 5.22725 5.27521 5.27883 5.38974 5.42202 5.60782 5.66259 5.76926 5.83058 5.88756 5.93333 6.05667 6.08738 6.09426 6.13739 6.19879 6.54267 6.83217 6.87386 6.91226 7.24192 7.57066 7.70405 7.78845 7.89632 8.14680 8.33067 8.64160 8.79207 9.09966 10.23564 10.39674 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.015906 B = 0.002603 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.964957 B =10752.870219 C =12123.540015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.433 4.433 8 H 0.083 0.917 9 C 0.292 3.708 10 C -0.315 4.315 11 C -0.031 4.031 12 C -0.369 4.369 13 C 0.412 3.588 14 N -0.736 5.736 15 C 0.221 3.779 16 C -0.229 4.229 17 C 0.053 3.947 18 N -0.470 5.470 19 C 0.050 3.950 20 C -0.015 4.015 21 C -0.111 4.111 22 C -0.123 4.123 23 C -0.121 4.121 24 C -0.111 4.111 25 S 0.131 5.869 26 N -0.530 5.530 27 H 0.270 0.730 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.397 0.603 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.176 0.824 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.744 -6.095 1.972 19.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.154 4.154 3 Si 0.730 3.270 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.465 4.465 8 H 0.101 0.899 9 C 0.165 3.835 10 C -0.338 4.338 11 C -0.056 4.056 12 C -0.395 4.395 13 C 0.172 3.828 14 N -0.374 5.374 15 C 0.093 3.907 16 C -0.351 4.351 17 C -0.099 4.099 18 N -0.183 5.183 19 C -0.228 4.228 20 C -0.037 4.037 21 C -0.150 4.150 22 C -0.161 4.161 23 C -0.159 4.159 24 C -0.150 4.150 25 S 0.388 5.612 26 N -0.252 5.252 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.232 0.768 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.193 0.807 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.580 -5.312 2.662 20.462 hybrid contribution 1.148 0.114 -0.882 1.452 sum -18.433 -5.198 1.780 19.234 Atomic orbital electron populations 1.70134 1.07143 1.27475 1.28919 1.26052 0.94861 1.00924 0.93586 0.86436 0.80105 0.80659 0.79840 1.18993 1.20355 1.18992 1.19552 0.94139 0.89384 1.43464 0.89896 1.18197 0.86831 0.91871 0.86580 1.21544 0.98447 0.93462 1.20359 1.20589 0.93403 0.96396 0.95170 1.20587 0.94682 0.95337 1.28890 1.18458 0.83892 0.90373 0.90057 1.44157 1.02709 1.06224 1.84298 1.19277 0.81482 0.88121 1.01837 1.26062 1.01723 1.12336 0.94948 1.21767 0.87387 1.00487 1.00235 1.66191 1.17481 1.15990 1.18664 1.27003 1.00551 1.03398 0.91837 1.20501 0.86693 0.96821 0.99695 1.22431 0.94143 0.96839 1.01585 1.22482 0.96807 0.95829 1.00943 1.22328 0.96358 0.97133 1.00046 1.22170 0.98242 0.94834 0.99781 1.84089 1.01379 1.64230 1.11495 1.68187 1.07689 1.24306 1.24996 0.91873 0.88667 0.88885 0.89229 0.76835 0.91859 0.90828 0.80684 0.89204 0.90326 0.91413 0.91467 0.91374 0.91681 0.91209 0.91267 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.19 11.46 55.55 0.64 -18.55 16 2 C 0.07 1.83 5.50 -17.35 -0.10 1.74 16 3 Si 0.91 18.86 29.56 -169.99 -5.02 13.84 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 7 C -0.43 -11.80 9.14 -37.75 -0.34 -12.14 16 8 H 0.08 2.11 7.85 -52.48 -0.41 1.70 16 9 C 0.29 8.18 6.55 -85.00 -0.56 7.62 16 10 C -0.32 -7.99 9.83 -38.65 -0.38 -8.37 16 11 C -0.03 -0.72 10.15 -39.40 -0.40 -1.12 16 12 C -0.37 -8.45 9.34 -38.87 -0.36 -8.82 16 13 C 0.41 10.06 7.65 -155.32 -1.19 8.87 16 14 N -0.74 -14.85 5.71 -61.58 -0.35 -15.20 16 15 C 0.22 3.46 5.41 -5.20 -0.03 3.44 16 16 C -0.23 -3.20 5.97 -35.92 -0.21 -3.42 16 17 C 0.05 0.73 11.25 -19.18 -0.22 0.52 16 18 N -0.47 -6.36 10.20 -11.86 -0.12 -6.48 16 19 C 0.05 0.59 5.66 -13.46 -0.08 0.52 16 20 C -0.01 -0.14 3.40 -90.65 -0.31 -0.45 16 21 C -0.11 -0.92 6.35 -25.08 -0.16 -1.08 16 22 C -0.12 -0.86 6.91 -24.74 -0.17 -1.03 16 23 C -0.12 -0.96 6.83 -25.08 -0.17 -1.13 16 24 C -0.11 -1.01 6.45 -25.61 -0.17 -1.17 16 25 S 0.13 1.62 23.18 -107.50 -2.49 -0.87 16 26 N -0.53 -14.74 7.89 -10.33 -0.08 -14.82 16 27 H 0.27 6.63 8.29 -40.82 -0.34 6.29 16 28 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 29 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 30 H 0.09 1.80 6.68 -52.48 -0.35 1.45 16 31 H 0.40 8.27 8.58 -40.82 -0.35 7.92 16 32 H 0.06 0.98 7.92 -51.93 -0.41 0.57 16 33 H 0.07 1.11 7.92 -51.93 -0.41 0.70 16 34 H 0.18 2.18 8.06 -52.49 -0.42 1.76 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.78 7.60 -51.93 -0.39 0.39 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.80 7.64 -51.93 -0.40 0.41 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -30.04 369.33 -12.79 -42.84 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -6.09 Total: 9.72 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -4.84 Total: -16.04 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.08 Total: -55.05 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.84 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.49 Total: -0.87 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.04 -12.79 -42.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883356809.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.166 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds