Wall clock time and date at job start Sat Apr 11 2020 02:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86803 * 119.99916 * 2 1 4 4 H 1.48505 * 109.47123 * 239.99615 * 3 2 1 5 5 H 1.48508 * 109.47093 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47412 * 119.99198 * 3 2 1 7 7 C 1.40022 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99888 * 180.02562 * 7 2 1 9 9 C 1.41313 * 119.99913 * 0.02562 * 7 2 1 10 10 C 1.40592 * 119.78455 * 179.97438 * 9 7 2 11 11 C 1.38351 * 119.14782 * 180.02562 * 10 9 7 12 12 C 1.38629 * 118.67837 * 359.97438 * 11 10 9 13 13 C 1.39760 * 119.49676 * 0.02562 * 12 11 10 14 14 N 1.38822 * 119.58648 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00327 * 359.97438 * 14 13 12 16 16 C 1.50693 * 109.47461 * 180.02562 * 15 14 13 17 17 C 1.33637 * 126.03703 * 89.95960 * 16 15 14 18 18 N 1.31789 * 114.50004 * 180.02562 * 17 16 15 19 19 C 1.29022 * 117.12256 * 359.97438 * 18 17 16 20 20 C 1.50701 * 124.91373 * 180.26689 * 19 18 17 21 21 C 1.54265 * 110.03555 * 56.86265 * 20 19 18 22 22 C 1.54883 * 104.19744 * 217.10714 * 21 20 19 23 23 C 1.54890 * 102.74851 * 37.94183 * 22 21 20 24 24 C 1.53882 * 110.03288 * 299.69597 * 20 19 18 25 25 S 1.70978 * 110.16886 * 0.02562 * 19 18 17 26 26 N 1.31973 * 120.82657 * 0.25065 * 13 12 11 27 27 H 0.96998 * 120.00675 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.42370 * 0.02562 * 10 9 7 29 29 H 1.07998 * 120.65858 * 179.97438 * 11 10 9 30 30 H 1.08010 * 120.25187 * 180.02562 * 12 11 10 31 31 H 0.97001 * 120.00264 * 179.97438 * 14 13 12 32 32 H 1.09002 * 109.47185 * 60.00101 * 15 14 13 33 33 H 1.09005 * 109.47045 * 300.00629 * 15 14 13 34 34 H 1.08002 * 122.75102 * 0.02562 * 17 16 15 35 35 H 1.08998 * 110.01688 * 178.31104 * 20 19 18 36 36 H 1.09001 * 110.48306 * 335.78370 * 21 20 19 37 37 H 1.09004 * 110.48742 * 98.42604 * 21 20 19 38 38 H 1.09001 * 110.75623 * 279.62628 * 22 21 20 39 39 H 1.09003 * 110.91530 * 156.32793 * 22 21 20 40 40 H 1.09005 * 110.48585 * 203.38021 * 23 22 21 41 41 H 1.09001 * 110.60132 * 80.79741 * 23 22 21 42 42 H 1.09000 * 110.03511 * 238.57149 * 24 20 19 43 43 H 1.08999 * 110.02893 * 0.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0950 1.6966 1.2126 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2125 0.0010 9 6 1.3010 -2.4364 0.0005 10 6 2.0086 -3.6513 0.0005 11 6 1.3037 -4.8417 0.0000 12 6 -0.0818 -4.7944 0.0000 13 6 -0.7280 -3.5552 0.0000 14 7 -2.1154 -3.5056 -0.0005 15 6 -2.8928 -4.7474 -0.0016 16 6 -4.3636 -4.4193 -0.0026 17 6 -5.1299 -4.2469 -1.0838 18 7 -6.3903 -3.9656 -0.8211 19 6 -6.7298 -3.8916 0.4215 20 6 -8.1194 -3.5876 0.9193 21 6 -9.1218 -4.6104 0.3459 22 6 -10.3990 -3.7782 0.0722 23 6 -9.8273 -2.4341 -0.4430 24 6 -8.5681 -2.2038 0.4177 25 16 -5.3765 -4.1948 1.4215 26 7 -0.0359 -2.4315 -0.0049 27 1 -0.4851 0.8400 -0.0004 28 1 3.0886 -3.6552 0.0010 29 1 1.8224 -5.7890 -0.0004 30 1 -0.6575 -5.7083 0.0000 31 1 -2.5701 -2.6488 -0.0001 32 1 -2.6504 -5.3286 0.8881 33 1 -2.6496 -5.3275 -0.8919 34 1 -4.7477 -4.3313 -2.0904 35 1 -8.1396 -3.6143 2.0088 36 1 -8.7405 -5.0399 -0.5806 37 1 -9.3262 -5.3944 1.0752 38 1 -10.9674 -3.6296 0.9904 39 1 -11.0168 -4.2528 -0.6902 40 1 -10.5467 -1.6296 -0.2895 41 1 -9.5604 -2.5097 -1.4972 42 1 -8.8068 -1.5593 1.2637 43 1 -7.7809 -1.7523 -0.1861 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883356809.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:18:45 Heat of formation + Delta-G solvation = 52.873410 kcal Electronic energy + Delta-G solvation = -24133.253007 eV Core-core repulsion = 20689.612437 eV Total energy + Delta-G solvation = -3443.640570 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.05435 -40.11894 -38.73397 -36.90050 -35.20399 -32.91408 -32.18040 -31.01066 -29.61384 -29.45896 -27.28242 -26.54654 -24.92563 -23.37436 -22.37562 -21.99685 -21.51081 -19.70262 -19.26892 -19.19089 -18.06744 -16.97009 -16.77525 -16.51716 -16.23252 -16.02442 -15.64476 -15.40666 -15.17959 -14.91699 -14.71885 -14.34970 -14.18357 -13.98131 -13.82099 -13.46320 -12.87433 -12.74529 -12.61217 -12.50444 -12.41256 -12.33668 -12.22361 -12.00383 -11.92016 -11.77906 -11.63761 -11.44147 -11.30981 -10.73545 -10.56748 -10.33758 -9.85558 -9.84037 -9.45624 -8.35171 -8.23628 -6.48712 -0.40868 0.28190 0.71117 1.05713 1.33927 1.40465 1.52431 1.58516 1.71963 2.24132 2.73235 2.91816 3.03412 3.66805 3.69396 3.75103 3.82036 4.00790 4.15797 4.31627 4.37192 4.48948 4.51406 4.55474 4.57906 4.66924 4.76259 4.78127 4.82255 4.96100 4.97068 5.00293 5.07402 5.08347 5.11549 5.26276 5.27130 5.34236 5.36966 5.50995 5.69869 5.95568 6.04382 6.20709 6.51120 6.68420 6.79599 6.89315 7.17949 8.32740 8.50026 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.015906 B = 0.002603 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.964957 B =10752.870219 C =12123.540015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.025 3.975 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.471 4.471 8 H 0.087 0.913 9 C 0.258 3.742 10 C -0.342 4.342 11 C -0.029 4.029 12 C -0.366 4.366 13 C 0.395 3.605 14 N -0.731 5.731 15 C 0.224 3.776 16 C -0.249 4.249 17 C 0.054 3.946 18 N -0.491 5.491 19 C 0.059 3.941 20 C -0.020 4.020 21 C -0.109 4.109 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.111 4.111 25 S 0.146 5.854 26 N -0.566 5.566 27 H 0.275 0.725 28 H 0.103 0.897 29 H 0.131 0.869 30 H 0.121 0.879 31 H 0.390 0.610 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.182 0.818 35 H 0.110 0.890 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.085 0.915 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.135 -6.562 2.696 21.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.196 4.196 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.503 4.503 8 H 0.105 0.895 9 C 0.131 3.869 10 C -0.365 4.365 11 C -0.053 4.053 12 C -0.392 4.392 13 C 0.155 3.845 14 N -0.367 5.367 15 C 0.098 3.902 16 C -0.370 4.370 17 C -0.098 4.098 18 N -0.205 5.205 19 C -0.218 4.218 20 C -0.042 4.042 21 C -0.148 4.148 22 C -0.154 4.154 23 C -0.159 4.159 24 C -0.151 4.151 25 S 0.404 5.596 26 N -0.288 5.288 27 H 0.085 0.915 28 H 0.121 0.879 29 H 0.149 0.851 30 H 0.139 0.861 31 H 0.224 0.776 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.199 0.801 35 H 0.128 0.872 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.104 0.896 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.999 -5.826 3.392 22.054 hybrid contribution 1.436 0.136 -1.103 1.815 sum -19.563 -5.691 2.289 20.502 Atomic orbital electron populations 1.70244 1.08786 1.28665 1.29749 1.26964 0.95726 1.04392 0.92538 0.85230 0.78618 0.75574 0.80028 1.18380 1.19432 1.18305 1.19917 0.94637 0.90471 1.45246 0.89461 1.18681 0.87584 0.93272 0.87361 1.21709 0.99058 0.93754 1.21963 1.21019 0.93696 0.97216 0.93373 1.20958 0.95048 0.95948 1.27209 1.18894 0.85441 0.90451 0.89730 1.44337 1.01520 1.07589 1.83288 1.19356 0.82032 0.86321 1.02480 1.25860 1.01021 1.14215 0.95952 1.21946 0.87582 0.99689 1.00620 1.66252 1.17441 1.17225 1.19538 1.27568 1.01512 1.01346 0.91391 1.20768 0.85299 0.97269 1.00888 1.22422 0.94312 0.97082 1.00995 1.22479 0.96283 0.94726 1.01912 1.22327 0.96192 0.98401 0.98938 1.22184 0.97946 0.94765 1.00174 1.83989 1.01047 1.63935 1.10669 1.68151 1.08062 1.26212 1.26404 0.91456 0.87877 0.85107 0.86083 0.77600 0.91232 0.89872 0.80110 0.87201 0.92312 0.89828 0.89697 0.90745 0.90257 0.92766 0.89644 0.93579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.55 11.46 21.84 0.25 -41.30 16 2 C 0.03 1.34 5.50 85.29 0.47 1.81 16 3 Si 0.99 39.23 29.56 68.60 2.03 41.26 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 6 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 7 C -0.47 -26.45 9.14 23.46 0.21 -26.23 16 8 H 0.09 4.58 7.85 -2.91 -0.02 4.56 16 9 C 0.26 14.90 6.55 40.19 0.26 15.16 16 10 C -0.34 -17.55 9.83 22.87 0.22 -17.33 16 11 C -0.03 -1.30 10.15 22.39 0.23 -1.07 16 12 C -0.37 -16.33 9.34 22.73 0.21 -16.12 16 13 C 0.40 19.44 7.65 133.40 1.02 20.46 16 14 N -0.73 -29.66 5.71 -348.73 -1.99 -31.66 16 15 C 0.22 6.85 5.41 85.63 0.46 7.32 16 16 C -0.25 -6.82 5.97 24.64 0.15 -6.67 16 17 C 0.05 1.47 11.25 83.65 0.94 2.41 16 18 N -0.49 -13.14 10.20 -191.44 -1.95 -15.09 16 19 C 0.06 1.36 5.66 88.52 0.50 1.86 16 20 C -0.02 -0.34 3.40 -10.81 -0.04 -0.38 16 21 C -0.11 -1.60 6.35 31.67 0.20 -1.40 16 22 C -0.12 -1.35 6.91 31.88 0.22 -1.13 16 23 C -0.12 -1.74 6.83 31.67 0.22 -1.52 16 24 C -0.11 -1.88 6.45 31.32 0.20 -1.68 16 25 S 0.15 3.46 23.18 -56.49 -1.31 2.15 16 26 N -0.57 -32.34 7.89 -186.60 -1.47 -33.81 16 27 H 0.27 13.83 8.29 -92.71 -0.77 13.06 16 28 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 29 H 0.13 4.80 8.06 -2.91 -0.02 4.77 16 30 H 0.12 4.55 6.68 -2.91 -0.02 4.53 16 31 H 0.39 16.67 8.58 -92.71 -0.80 15.88 16 32 H 0.07 2.05 7.92 -2.39 -0.02 2.03 16 33 H 0.08 2.39 7.92 -2.38 -0.02 2.37 16 34 H 0.18 4.50 8.06 -2.91 -0.02 4.48 16 35 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 1.11 7.60 -2.39 -0.02 1.09 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.05 1.02 7.64 -2.39 -0.02 1.00 16 Total: -1.00 -66.79 369.33 1.27 -65.51 By element: Atomic # 1 Polarization: 37.20 SS G_CDS: 0.23 Total: 37.43 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 5.49 Total: -24.50 kcal Atomic # 7 Polarization: -116.69 SS G_CDS: -5.17 Total: -121.86 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -1.31 Total: 2.15 kcal Total: -66.79 1.27 -65.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883356809.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.387 kcal (2) G-P(sol) polarization free energy of solvation -66.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds