Wall clock time and date at job start Sat Apr 11 2020 02:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00214 * 2 1 4 4 H 1.48497 * 109.46945 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47076 * 299.99840 * 3 2 1 6 6 H 1.48503 * 109.46979 * 59.99958 * 3 2 1 7 7 C 1.38699 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99916 * 180.02562 * 7 2 1 9 9 O 1.34819 * 119.99845 * 0.02562 * 7 2 1 10 10 C 1.35528 * 116.99720 * 185.07575 * 9 7 2 11 11 C 1.38833 * 120.16029 * 354.34548 * 10 9 7 12 12 C 1.38022 * 120.07389 * 180.02562 * 11 10 9 13 13 C 1.38577 * 120.39898 * 359.97438 * 12 11 10 14 14 C 1.37829 * 120.32549 * 359.72013 * 13 12 11 15 15 C 1.39669 * 119.91610 * 0.55680 * 14 13 12 16 16 C 1.47530 * 120.19838 * 179.71650 * 15 14 13 17 17 O 1.21590 * 120.00162 * 213.48632 * 16 15 14 18 18 N 1.34775 * 119.99837 * 33.49364 * 16 15 14 19 19 C 1.46855 * 120.38222 * 5.90823 * 18 16 15 20 20 C 1.53399 * 108.77950 * 122.38172 * 19 18 16 21 21 C 1.51295 * 108.42452 * 49.42290 * 20 19 18 22 22 O 1.20754 * 120.80639 * 127.06503 * 21 20 19 23 23 C 1.51294 * 118.38742 * 307.04537 * 21 20 19 24 24 C 1.46856 * 120.38137 * 185.90591 * 18 16 15 25 25 H 1.09005 * 109.70551 * 117.76478 * 24 18 16 26 26 C 1.52999 * 109.58909 * 357.40572 * 24 18 16 27 27 C 1.52997 * 117.50211 * 259.54605 * 26 24 18 28 28 C 1.52990 * 60.00195 * 252.50658 * 27 26 24 29 29 H 0.97003 * 119.99606 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.96509 * 0.04458 * 11 10 9 31 31 H 1.07997 * 119.80658 * 179.97438 * 12 11 10 32 32 H 1.07995 * 119.83953 * 179.97438 * 13 12 11 33 33 H 1.07996 * 120.04817 * 180.27797 * 14 13 12 34 34 H 1.08998 * 109.58607 * 2.58793 * 19 18 16 35 35 H 1.08998 * 109.58512 * 242.17064 * 19 18 16 36 36 H 1.08996 * 109.67674 * 169.16311 * 20 19 18 37 37 H 1.09001 * 109.66900 * 289.68897 * 20 19 18 38 38 H 1.09000 * 109.67436 * 172.69685 * 23 21 20 39 39 H 1.09012 * 109.67142 * 293.18753 * 23 21 20 40 40 H 1.09000 * 115.54704 * 45.24986 * 26 24 18 41 41 H 1.09003 * 117.49753 * 0.02562 * 27 26 24 42 42 H 1.09004 * 117.49960 * 145.01324 * 27 26 24 43 43 H 1.08994 * 117.50069 * 252.50736 * 28 27 26 44 44 H 1.09003 * 117.50327 * 107.48864 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0086 -1.2012 0.0005 8 1 3.0886 -1.2013 0.0010 9 8 1.3344 -2.3687 0.0005 10 6 2.0684 -3.5030 0.1079 11 6 3.4552 -3.4404 0.0936 12 6 4.2010 -4.5967 0.2025 13 6 3.5741 -5.8262 0.3273 14 6 2.1983 -5.9069 0.3497 15 6 1.4305 -4.7458 0.2346 16 6 -0.0425 -4.8255 0.2515 17 8 -0.7012 -4.0457 -0.4090 18 7 -0.6581 -5.7627 0.9993 19 6 0.1200 -6.6238 1.8992 20 6 -0.4150 -6.4572 3.3272 21 6 -1.9202 -6.6065 3.2943 22 8 -2.4800 -7.3898 4.0231 23 6 -2.7071 -5.7501 2.3265 24 6 -2.1146 -5.9346 0.9237 25 1 -2.3482 -6.9341 0.5569 26 6 -2.7059 -4.8892 -0.0242 27 6 -3.3568 -3.6548 0.6028 28 6 -4.2278 -4.7336 -0.0437 29 1 -0.4850 0.8401 -0.0004 30 1 3.9512 -2.4858 -0.0026 31 1 5.2795 -4.5430 0.1905 32 1 4.1664 -6.7253 0.4115 33 1 1.7145 -6.8670 0.4516 34 1 1.1699 -6.3330 1.8660 35 1 0.0169 -7.6638 1.5894 36 1 0.0158 -7.2229 3.9722 37 1 -0.1524 -5.4688 3.7043 38 1 -3.7519 -6.0607 2.3275 39 1 -2.6353 -4.7030 2.6211 40 1 -2.1741 -4.7545 -0.9661 41 1 -3.3634 -3.5871 1.6907 42 1 -3.2532 -2.7075 0.0735 43 1 -4.6973 -4.4963 -0.9983 44 1 -4.8079 -5.3761 0.6187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891788799.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:19:00 Heat of formation + Delta-G solvation = 1.222030 kcal Electronic energy + Delta-G solvation = -29203.810506 eV Core-core repulsion = 25282.884542 eV Total energy + Delta-G solvation = -3920.925964 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.80139 -39.37060 -38.53958 -36.94412 -36.39245 -35.57557 -32.41753 -31.53525 -30.96910 -29.88579 -29.05190 -25.58770 -25.17459 -24.29188 -22.62728 -21.98678 -21.78481 -20.31212 -20.07459 -18.62099 -18.12600 -17.02732 -16.38918 -16.18276 -15.68333 -15.29670 -15.18958 -14.90676 -14.74399 -14.43161 -14.35733 -14.09483 -13.83806 -13.66074 -13.40638 -13.13871 -12.83301 -12.44419 -12.18574 -12.08310 -11.91346 -11.75415 -11.58215 -11.31238 -11.30128 -11.04250 -10.95130 -10.82079 -10.67367 -10.49422 -10.20501 -9.79372 -9.55110 -9.47324 -8.95039 -8.40001 -8.32218 -8.14450 -7.39901 -6.53054 -4.12442 1.65551 1.85947 2.21216 3.06994 3.07827 3.11972 3.13637 3.52726 3.87207 4.01466 4.30914 4.45472 4.64882 4.75141 4.80696 4.98535 5.03427 5.06781 5.09804 5.23074 5.30707 5.38296 5.44267 5.45009 5.57450 5.61789 5.69347 5.73135 5.83653 5.91928 5.93776 5.97759 6.03877 6.06672 6.39488 6.47439 6.55393 6.62699 6.69244 6.85783 6.94908 7.03033 7.16751 7.21946 7.39404 7.60293 7.77111 7.89008 8.87523 8.91258 9.57654 10.61304 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.011153 B = 0.004916 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.896618 B = 5693.880383 C = 7218.095777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.045 3.955 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.401 4.401 8 H 0.094 0.906 9 O -0.135 6.135 10 C 0.191 3.809 11 C -0.235 4.235 12 C -0.052 4.052 13 C -0.228 4.228 14 C -0.051 4.051 15 C -0.226 4.226 16 C 0.570 3.430 17 O -0.486 6.486 18 N -0.620 5.620 19 C 0.099 3.901 20 C -0.188 4.188 21 C 0.366 3.634 22 O -0.464 6.464 23 C -0.192 4.192 24 C 0.192 3.808 25 H 0.078 0.922 26 C -0.135 4.135 27 C -0.161 4.161 28 C -0.203 4.203 29 H 0.271 0.729 30 H 0.132 0.868 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.112 0.888 40 H 0.147 0.853 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.353 -11.018 3.186 11.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.162 4.162 3 Si 0.764 3.236 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.476 4.476 8 H 0.112 0.888 9 O -0.034 6.034 10 C 0.132 3.868 11 C -0.255 4.255 12 C -0.070 4.070 13 C -0.247 4.247 14 C -0.070 4.070 15 C -0.231 4.231 16 C 0.361 3.639 17 O -0.360 6.360 18 N -0.356 5.356 19 C -0.025 4.025 20 C -0.226 4.226 21 C 0.242 3.758 22 O -0.338 6.338 23 C -0.231 4.231 24 C 0.089 3.911 25 H 0.096 0.904 26 C -0.153 4.153 27 C -0.197 4.197 28 C -0.241 4.241 29 H 0.081 0.919 30 H 0.149 0.851 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.130 0.870 40 H 0.164 0.836 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.108 0.892 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.773 -10.729 3.160 11.212 hybrid contribution 0.628 0.897 0.168 1.108 sum -0.144 -9.833 3.327 10.382 Atomic orbital electron populations 1.70098 1.05934 1.27689 1.43084 1.25349 0.95823 0.98903 0.96136 0.85668 0.79222 0.80288 0.78386 1.18974 1.19991 1.20044 1.21489 0.91892 0.80874 1.53395 0.88832 1.84081 1.33879 1.11145 1.74264 1.19215 0.89860 0.87247 0.90521 1.21165 0.93382 0.99381 1.11533 1.20911 0.98710 0.92308 0.95098 1.20502 0.94025 0.97172 1.12980 1.21004 0.93855 0.96155 0.95978 1.18797 0.92043 0.92324 1.19926 1.18224 0.87465 0.79206 0.78977 1.90794 1.64461 1.38452 1.42330 1.47996 1.06098 1.37473 1.44034 1.22287 0.98832 0.94639 0.86696 1.22775 0.94530 1.05609 0.99720 1.24816 0.91974 0.79198 0.79812 1.90386 1.74057 1.32098 1.37295 1.23064 1.00886 1.02864 0.96260 1.20549 0.79485 0.98827 0.92279 0.90416 1.22945 0.92313 0.96994 1.03065 1.22924 1.02760 0.94550 0.99511 1.23156 0.94273 1.04121 1.02564 0.91904 0.85075 0.87168 0.87145 0.85897 0.85977 0.91163 0.88409 0.87667 0.88592 0.86987 0.83551 0.89432 0.88400 0.89226 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.92 13.67 55.48 0.76 -23.16 16 2 C 0.05 1.21 5.49 -17.51 -0.10 1.11 16 3 Si 0.94 19.81 29.55 -169.99 -5.02 14.78 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.40 -10.76 9.49 30.90 0.29 -10.47 16 8 H 0.09 2.30 5.21 -52.49 -0.27 2.03 16 9 O -0.13 -3.71 8.36 -17.39 -0.15 -3.86 16 10 C 0.19 4.38 6.63 -38.60 -0.26 4.13 16 11 C -0.24 -4.73 9.16 -39.44 -0.36 -5.09 16 12 C -0.05 -0.84 10.03 -39.54 -0.40 -1.24 16 13 C -0.23 -3.39 10.03 -39.61 -0.40 -3.79 16 14 C -0.05 -0.80 7.34 -39.20 -0.29 -1.09 16 15 C -0.23 -4.47 5.39 -104.81 -0.56 -5.04 16 16 C 0.57 11.27 7.19 -12.47 -0.09 11.18 16 17 O -0.49 -11.44 11.33 -12.87 -0.15 -11.59 16 18 N -0.62 -9.43 2.91 -166.30 -0.48 -9.92 16 19 C 0.10 1.16 4.84 -3.64 -0.02 1.15 16 20 C -0.19 -2.13 6.34 -27.38 -0.17 -2.30 16 21 C 0.37 4.79 6.68 -28.45 -0.19 4.60 16 22 O -0.46 -7.22 17.89 6.00 0.11 -7.11 16 23 C -0.19 -2.49 4.65 -27.39 -0.13 -2.61 16 24 C 0.19 2.70 3.35 -67.53 -0.23 2.47 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 26 C -0.14 -2.19 3.89 -90.62 -0.35 -2.54 16 27 C -0.16 -2.68 9.37 -26.74 -0.25 -2.93 16 28 C -0.20 -2.80 9.92 -26.74 -0.27 -3.06 16 29 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.13 2.63 5.64 -52.48 -0.30 2.34 16 31 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.12 1.51 5.86 -52.49 -0.31 1.21 16 34 H 0.12 1.47 4.04 -51.93 -0.21 1.26 16 35 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.10 1.13 7.24 -51.93 -0.38 0.76 16 39 H 0.11 1.55 5.82 -51.92 -0.30 1.25 16 40 H 0.15 2.82 5.75 -53.28 -0.31 2.52 16 41 H 0.09 1.38 5.67 -51.93 -0.29 1.08 16 42 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 43 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.08 0.99 7.21 -51.93 -0.37 0.62 16 LS Contribution 350.49 15.07 5.28 5.28 Total: -1.00 -31.82 350.49 -8.66 -40.49 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -5.26 Total: 10.61 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -3.76 Total: -15.52 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.27 Total: -33.08 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.18 Total: -22.56 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.82 -8.66 -40.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891788799.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.709 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds