Wall clock time and date at job start Sat Apr 11 2020 02:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31529 * 1 3 3 Si 1.86797 * 119.99630 * 2 1 4 4 H 1.48497 * 109.47124 * 269.99961 * 3 2 1 5 5 H 1.48496 * 109.47320 * 30.00287 * 3 2 1 6 6 H 1.48507 * 109.46721 * 150.00163 * 3 2 1 7 7 C 1.38697 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00040 * 179.97438 * 7 2 1 9 9 O 1.34820 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.35518 * 116.99430 * 185.24532 * 9 7 2 11 11 C 1.38833 * 120.16789 * 354.19282 * 10 9 7 12 12 C 1.38026 * 120.07415 * 180.02562 * 11 10 9 13 13 C 1.38574 * 120.39958 * 0.02562 * 12 11 10 14 14 C 1.37830 * 120.32814 * 0.02562 * 13 12 11 15 15 C 1.39672 * 119.91500 * 0.25348 * 14 13 12 16 16 C 1.47530 * 120.19578 * 179.70157 * 15 14 13 17 17 O 1.21592 * 120.00081 * 109.89712 * 16 15 14 18 18 N 1.34774 * 120.00166 * 289.89816 * 16 15 14 19 19 C 1.46860 * 120.37787 * 357.68242 * 18 16 15 20 20 C 1.53398 * 108.77349 * 237.61969 * 19 18 16 21 21 C 1.51291 * 108.42799 * 310.57795 * 20 19 18 22 22 O 1.20759 * 120.80774 * 232.94094 * 21 20 19 23 23 C 1.51294 * 118.38897 * 52.95764 * 21 20 19 24 24 C 1.46859 * 120.38442 * 177.40557 * 18 16 15 25 25 H 1.09000 * 109.59015 * 242.17005 * 24 18 16 26 26 C 1.53003 * 109.58217 * 2.59032 * 24 18 16 27 27 C 1.53000 * 117.49843 * 258.67608 * 26 24 18 28 28 C 1.53000 * 117.49591 * 190.05389 * 26 24 18 29 29 H 0.96992 * 120.00155 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.96102 * 359.97438 * 11 10 9 31 31 H 1.07994 * 119.80032 * 179.97438 * 12 11 10 32 32 H 1.08002 * 119.83648 * 179.97438 * 13 12 11 33 33 H 1.07991 * 120.03989 * 179.97438 * 14 13 12 34 34 H 1.08997 * 109.58874 * 357.41058 * 19 18 16 35 35 H 1.09008 * 109.58250 * 117.69682 * 19 18 16 36 36 H 1.08998 * 109.67293 * 70.31034 * 20 19 18 37 37 H 1.09002 * 109.67450 * 190.80498 * 20 19 18 38 38 H 1.09000 * 109.67448 * 66.77488 * 23 21 20 39 39 H 1.09003 * 109.67688 * 187.27565 * 23 21 20 40 40 H 1.09005 * 115.55075 * 44.39023 * 26 24 18 41 41 H 1.08999 * 117.49919 * 0.02562 * 27 26 24 42 42 H 1.09003 * 117.49459 * 145.02373 * 27 26 24 43 43 H 1.08998 * 117.50020 * 214.97760 * 28 26 24 44 44 H 1.08995 * 117.50169 * 0.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0088 -1.2012 -0.0005 8 1 3.0888 -1.2012 -0.0010 9 8 1.3347 -2.3687 -0.0016 10 6 2.0684 -3.5027 0.1083 11 6 3.4553 -3.4405 0.0944 12 6 4.2008 -4.5967 0.2059 13 6 3.5736 -5.8260 0.3319 14 6 2.1978 -5.9071 0.3466 15 6 1.4302 -4.7461 0.2288 16 6 -0.0428 -4.8264 0.2372 17 8 -0.6694 -4.4034 1.1896 18 7 -0.6942 -5.3687 -0.8107 19 6 0.0506 -5.8359 -1.9871 20 6 -0.4724 -5.0996 -3.2270 21 6 -1.9826 -5.1905 -3.2356 22 8 -2.5719 -5.6012 -4.2063 23 6 -2.7365 -4.7541 -1.9987 24 6 -2.1563 -5.5047 -0.7870 25 1 -2.4262 -6.5592 -0.8431 26 6 -2.7066 -4.8997 0.5061 27 6 -3.0886 -5.8642 1.6307 28 6 -4.1805 -5.1498 0.8317 29 1 -0.4850 0.8400 0.0004 30 1 3.9514 -2.4863 -0.0047 31 1 5.2793 -4.5432 0.1941 32 1 4.1658 -6.7250 0.4181 33 1 1.7138 -6.8675 0.4446 34 1 1.1116 -5.6230 -1.8561 35 1 -0.0944 -6.9094 -2.1087 36 1 -0.1680 -4.0537 -3.1884 37 1 -0.0710 -5.5655 -4.1270 38 1 -2.6201 -3.6795 -1.8580 39 1 -3.7934 -4.9975 -2.1081 40 1 -2.2848 -3.9357 0.7909 41 1 -2.9474 -6.9297 1.4495 42 1 -2.9180 -5.5349 2.6557 43 1 -4.7282 -4.3507 1.3311 44 1 -4.7579 -5.7457 0.1250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891788800.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:19:03 Heat of formation + Delta-G solvation = -19.503996 kcal Electronic energy + Delta-G solvation = -29186.030530 eV Core-core repulsion = 25264.205818 eV Total energy + Delta-G solvation = -3921.824712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.64759 -39.32785 -38.56075 -36.80920 -36.29719 -35.66162 -32.43745 -31.58216 -30.96193 -30.06925 -29.05105 -25.54513 -24.92307 -24.02049 -22.77158 -21.99080 -21.64660 -20.81582 -19.76457 -18.83685 -18.13630 -17.21391 -16.32620 -16.13268 -15.50719 -15.25175 -15.03973 -14.96093 -14.72582 -14.59475 -14.33317 -14.17921 -13.81237 -13.73603 -13.20742 -13.11441 -12.96657 -12.52299 -12.23092 -12.08356 -11.81749 -11.63299 -11.47524 -11.37710 -11.34824 -11.20435 -11.05762 -10.98770 -10.85512 -10.52833 -10.28711 -9.95537 -9.59401 -9.40368 -8.97093 -8.52081 -8.39174 -8.17172 -7.42157 -6.56345 -4.16309 1.78196 1.94607 2.19834 3.05530 3.07577 3.10226 3.12136 3.29953 3.85666 4.10412 4.18272 4.37113 4.65080 4.83611 4.88101 4.92736 5.04608 5.07252 5.17721 5.23135 5.27725 5.35387 5.47883 5.57936 5.61695 5.65154 5.70778 5.74884 5.81141 5.87998 5.92246 6.01034 6.07193 6.09776 6.17851 6.42326 6.47579 6.54191 6.64841 6.87709 6.95641 7.06054 7.15936 7.20979 7.47596 7.58361 7.72253 7.85737 8.75840 8.87316 9.52246 10.59546 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.009741 B = 0.005026 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.681428 B = 5570.157160 C = 6358.325899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.045 3.955 3 Si 0.941 3.059 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.398 4.398 8 H 0.094 0.906 9 O -0.158 6.158 10 C 0.183 3.817 11 C -0.232 4.232 12 C -0.057 4.057 13 C -0.219 4.219 14 C -0.044 4.044 15 C -0.214 4.214 16 C 0.591 3.409 17 O -0.505 6.505 18 N -0.614 5.614 19 C 0.119 3.881 20 C -0.188 4.188 21 C 0.368 3.632 22 O -0.465 6.465 23 C -0.180 4.180 24 C 0.191 3.809 25 H 0.070 0.930 26 C -0.136 4.136 27 C -0.166 4.166 28 C -0.198 4.198 29 H 0.272 0.728 30 H 0.132 0.868 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.154 0.846 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.172 -10.503 -2.670 10.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.162 4.162 3 Si 0.765 3.235 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.474 4.474 8 H 0.112 0.888 9 O -0.059 6.059 10 C 0.126 3.874 11 C -0.251 4.251 12 C -0.076 4.076 13 C -0.238 4.238 14 C -0.063 4.063 15 C -0.219 4.219 16 C 0.380 3.620 17 O -0.380 6.380 18 N -0.349 5.349 19 C -0.004 4.004 20 C -0.227 4.227 21 C 0.244 3.756 22 O -0.339 6.339 23 C -0.218 4.218 24 C 0.088 3.912 25 H 0.088 0.912 26 C -0.154 4.154 27 C -0.203 4.203 28 C -0.236 4.236 29 H 0.082 0.918 30 H 0.149 0.851 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.124 0.876 35 H 0.088 0.912 36 H 0.128 0.872 37 H 0.116 0.884 38 H 0.130 0.870 39 H 0.114 0.886 40 H 0.172 0.828 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.938 -10.243 -2.670 10.626 hybrid contribution 0.660 0.864 -0.010 1.087 sum -0.278 -9.379 -2.680 9.758 Atomic orbital electron populations 1.70036 1.05965 1.27924 1.44133 1.25319 0.95840 0.98877 0.96127 0.85720 0.79047 0.79972 0.78778 1.19785 1.20134 1.19060 1.21363 0.91838 0.80548 1.53613 0.88843 1.83946 1.34377 1.11399 1.76133 1.19152 0.90015 0.86923 0.91271 1.21140 0.93294 0.99358 1.11351 1.20894 0.98740 0.92265 0.95674 1.20494 0.93943 0.97198 1.12137 1.20635 0.93595 0.95439 0.96627 1.18745 0.92076 0.92354 1.18718 1.18194 0.87132 0.75165 0.81469 1.90701 1.66596 1.45698 1.34968 1.48080 1.05856 1.63105 1.17812 1.21615 0.98369 0.97455 0.82988 1.22748 0.94514 1.04967 1.00423 1.24791 0.91963 0.71671 0.87191 1.90381 1.72595 1.35134 1.35759 1.22839 1.00937 1.04148 0.93908 1.20716 0.79365 0.97790 0.93338 0.91178 1.23009 0.94596 1.04238 0.93558 1.22781 1.03088 0.97056 0.97375 1.23091 0.92476 1.03788 1.04229 0.91818 0.85057 0.87138 0.87127 0.86793 0.87578 0.91216 0.87191 0.88398 0.87015 0.88591 0.82842 0.89926 0.88989 0.88949 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.88 13.67 55.48 0.76 -23.12 16 2 C 0.04 1.18 5.49 -17.51 -0.10 1.08 16 3 Si 0.94 19.68 29.55 -169.99 -5.02 14.66 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.40 -10.51 9.49 30.90 0.29 -10.21 16 8 H 0.09 2.26 5.21 -52.49 -0.27 1.99 16 9 O -0.16 -4.22 9.21 0.79 0.01 -4.21 16 10 C 0.18 4.12 6.66 -38.60 -0.26 3.86 16 11 C -0.23 -4.59 9.16 -39.44 -0.36 -4.95 16 12 C -0.06 -0.93 10.03 -39.54 -0.40 -1.33 16 13 C -0.22 -3.31 10.02 -39.61 -0.40 -3.71 16 14 C -0.04 -0.71 8.67 -39.20 -0.34 -1.05 16 15 C -0.21 -4.21 4.10 -104.81 -0.43 -4.64 16 16 C 0.59 11.66 6.58 -12.47 -0.08 11.58 16 17 O -0.50 -11.49 12.51 5.28 0.07 -11.43 16 18 N -0.61 -9.74 2.90 -166.00 -0.48 -10.22 16 19 C 0.12 1.55 6.17 -3.64 -0.02 1.53 16 20 C -0.19 -2.43 6.34 -27.39 -0.17 -2.60 16 21 C 0.37 5.25 6.68 -28.45 -0.19 5.06 16 22 O -0.46 -7.68 17.89 6.00 0.11 -7.57 16 23 C -0.18 -2.50 5.59 -27.13 -0.15 -2.66 16 24 C 0.19 2.78 3.05 -67.27 -0.21 2.58 16 25 H 0.07 0.91 8.02 -51.93 -0.42 0.49 16 26 C -0.14 -2.20 3.21 -90.62 -0.29 -2.49 16 27 C -0.17 -2.41 9.82 -26.73 -0.26 -2.67 16 28 C -0.20 -2.64 10.16 -26.73 -0.27 -2.92 16 29 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.13 2.59 5.64 -52.49 -0.30 2.30 16 31 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.11 1.43 5.64 -51.93 -0.29 1.14 16 35 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 36 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.11 1.72 8.13 -51.93 -0.42 1.30 16 39 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.15 3.17 5.77 -53.23 -0.31 2.86 16 41 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 42 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 364.28 15.07 5.49 5.49 Total: -1.00 -31.06 364.28 -8.50 -39.56 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -5.79 Total: 10.39 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -3.63 Total: -13.54 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.28 Total: -33.35 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: 0.18 Total: -23.21 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.06 -8.50 -39.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891788800.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.057 kcal (2) G-P(sol) polarization free energy of solvation -31.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds