Wall clock time and date at job start Sat Apr 11 2020 02:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99996 * 2 1 4 4 H 1.48504 * 109.47116 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47206 * 299.99918 * 3 2 1 6 6 H 1.48501 * 109.47570 * 59.99714 * 3 2 1 7 7 C 1.37878 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99970 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99616 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46891 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47045 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46917 * 179.97438 * 11 10 9 13 13 C 1.38539 * 120.00017 * 179.97438 * 12 11 10 14 14 C 1.39663 * 120.52859 * 0.02562 * 13 12 11 15 15 C 1.38083 * 118.33091 * 179.74208 * 14 13 12 16 16 N 1.32579 * 119.19843 * 0.25550 * 15 14 13 17 17 C 1.31755 * 121.01540 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.08600 * 180.02562 * 17 16 15 19 19 S 1.81401 * 109.46966 * 89.99654 * 18 17 16 20 20 C 1.76201 * 102.99907 * 180.02562 * 19 18 17 21 21 C 1.38980 * 120.07844 * 359.72310 * 20 19 18 22 22 C 1.38086 * 119.91565 * 179.76293 * 21 20 19 23 23 C 1.38305 * 120.08089 * 0.49818 * 22 21 20 24 24 C 1.38296 * 120.16152 * 359.75799 * 23 22 21 25 25 C 1.38081 * 120.08162 * 0.02562 * 24 23 22 26 26 N 1.31784 * 121.83097 * 359.97438 * 17 16 15 27 27 H 0.97000 * 120.00090 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47444 * 60.00235 * 9 7 2 29 29 H 1.09008 * 109.47269 * 299.99780 * 9 7 2 30 30 H 1.09000 * 109.47186 * 59.99708 * 10 9 7 31 31 H 1.09000 * 109.46838 * 300.00052 * 10 9 7 32 32 H 1.08996 * 109.47032 * 59.99912 * 11 10 9 33 33 H 1.08995 * 109.46798 * 299.99521 * 11 10 9 34 34 H 0.97001 * 120.00336 * 0.02562 * 12 11 10 35 35 H 1.08002 * 120.83789 * 0.02562 * 14 13 12 36 36 H 1.07996 * 120.39907 * 180.23007 * 15 14 13 37 37 H 1.08993 * 109.47316 * 209.99938 * 18 17 16 38 38 H 1.09003 * 109.46666 * 329.99949 * 18 17 16 39 39 H 1.07995 * 120.04103 * 0.02562 * 21 20 19 40 40 H 1.08002 * 119.95598 * 180.23364 * 22 21 20 41 41 H 1.07995 * 119.91848 * 179.73995 * 23 22 21 42 42 H 1.07998 * 119.96115 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.04438 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6620 0.0027 11 6 1.4802 -4.9871 0.0033 12 7 2.4322 -6.1006 0.0037 13 6 1.9704 -7.4068 0.0047 14 6 0.5997 -7.6746 0.0049 15 6 0.1897 -8.9932 0.0005 16 7 1.1028 -9.9544 0.0014 17 6 2.3891 -9.6690 0.0060 18 6 3.3896 -10.7959 0.0063 19 16 3.7961 -11.2440 -1.7039 20 6 4.9573 -12.5542 -1.5050 21 6 5.3270 -12.9699 -0.2314 22 6 6.2336 -14.0003 -0.0794 23 6 6.7813 -14.6116 -1.1925 24 6 6.4197 -14.1971 -2.4614 25 6 5.5104 -13.1703 -2.6212 26 7 2.8250 -8.4253 0.0093 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5575 -0.8880 29 1 0.6247 -2.5563 0.8920 30 1 2.8719 -3.6035 0.8926 31 1 2.8719 -3.6050 -0.8873 32 1 0.8538 -5.0453 -0.8868 33 1 0.8533 -5.0443 0.8931 34 1 3.3859 -5.9234 0.0039 35 1 -0.1215 -6.8707 0.0038 36 1 -0.8620 -9.2384 -0.0033 37 1 4.2947 -10.4780 0.5236 38 1 2.9636 -11.6597 0.5168 39 1 4.9027 -12.4904 0.6383 40 1 6.5186 -14.3263 0.9101 41 1 7.4933 -15.4144 -1.0706 42 1 6.8497 -14.6764 -3.3284 43 1 5.2287 -12.8468 -3.6123 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892327746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:19:08 Heat of formation + Delta-G solvation = 62.344516 kcal Electronic energy + Delta-G solvation = -22913.819072 eV Core-core repulsion = 19470.589200 eV Total energy + Delta-G solvation = -3443.229872 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.99324 -39.23408 -37.01003 -34.12147 -33.54155 -32.48319 -31.49757 -31.28269 -30.57860 -28.63740 -26.74101 -23.94328 -23.69999 -23.08305 -22.87059 -21.66294 -20.57472 -18.31939 -17.94924 -17.17990 -16.71220 -16.39554 -15.73567 -15.40031 -15.26097 -15.02238 -14.76856 -14.75110 -14.42610 -14.27096 -13.87203 -13.76222 -13.69518 -13.17576 -13.05672 -12.42935 -12.40682 -11.92967 -11.86167 -11.51989 -11.18692 -10.98985 -10.90896 -10.71008 -10.62288 -10.55478 -10.08869 -10.00992 -9.72923 -9.61452 -9.34993 -9.26662 -9.20973 -8.45659 -8.10122 -7.65719 -6.10434 -4.13442 0.55458 0.86113 1.00714 1.31965 1.54180 2.08722 2.99546 3.25171 3.33212 3.36009 3.36961 3.74031 3.88309 4.23526 4.38065 4.48015 4.56721 4.69491 4.73755 4.86892 4.96221 5.03217 5.13729 5.20031 5.26041 5.36795 5.39457 5.43794 5.51162 5.61360 5.64424 5.89277 5.90498 6.01345 6.11847 6.13975 6.41216 6.49463 6.53551 6.72951 6.85215 7.26211 7.51803 7.59718 7.62668 7.87539 8.19391 8.28800 8.93007 9.51571 11.00827 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.022365 B = 0.001698 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.640218 B =16487.215114 C =17281.493051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.121 4.121 11 C 0.119 3.881 12 N -0.701 5.701 13 C 0.442 3.558 14 C -0.286 4.286 15 C 0.175 3.825 16 N -0.555 5.555 17 C 0.365 3.635 18 C -0.040 4.040 19 S -0.075 6.075 20 C -0.083 4.083 21 C -0.135 4.135 22 C -0.099 4.099 23 C -0.129 4.129 24 C -0.101 4.101 25 C -0.102 4.102 26 N -0.570 5.570 27 H 0.261 0.739 28 H 0.020 0.980 29 H 0.019 0.981 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.408 0.592 35 H 0.147 0.853 36 H 0.167 0.833 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.966 -28.901 -1.075 29.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.004 4.004 12 N -0.331 5.331 13 C 0.197 3.803 14 C -0.315 4.315 15 C 0.014 3.986 16 N -0.276 5.276 17 C 0.094 3.906 18 C -0.189 4.189 19 S 0.170 5.830 20 C -0.196 4.196 21 C -0.159 4.159 22 C -0.119 4.119 23 C -0.150 4.150 24 C -0.121 4.121 25 C -0.126 4.126 26 N -0.296 5.296 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.244 0.756 35 H 0.165 0.835 36 H 0.184 0.816 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.753 -28.687 -2.038 29.786 hybrid contribution 0.637 1.286 1.192 1.865 sum 8.390 -27.401 -0.846 28.669 Atomic orbital electron populations 1.69962 1.06058 1.26689 1.50558 1.25018 0.94875 0.99365 0.95132 0.86516 0.80091 0.83626 0.77655 1.19728 1.20936 1.20952 1.21225 0.93110 0.90855 1.51009 0.92528 1.19036 0.93768 0.90852 0.97629 1.21892 0.99914 0.92726 1.01383 1.21854 0.91941 0.85146 1.01479 1.44966 1.10604 1.01177 1.76343 1.18576 0.89013 0.86145 0.86579 1.22293 0.95803 0.99914 1.13518 1.22842 0.99401 0.87683 0.88657 1.68128 1.01560 1.37763 1.20115 1.21403 0.89166 0.88921 0.91085 1.22194 1.00289 0.98276 0.98178 1.85878 1.49841 1.38550 1.08750 1.21891 1.01016 1.00160 0.96568 1.21203 1.00049 0.99091 0.95572 1.21074 0.96269 0.95534 0.99015 1.21186 1.00644 1.00564 0.92600 1.21095 0.96977 0.96402 0.97587 1.20763 0.97651 0.96705 0.97437 1.67634 1.39504 0.99284 1.23143 0.92928 0.96208 0.96241 0.92434 0.92406 0.91622 0.91641 0.75625 0.83529 0.81550 0.86961 0.86802 0.85790 0.85690 0.85850 0.85521 0.85464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.22 5.27 -26.73 -0.14 -2.36 16 11 C 0.12 1.79 4.93 -4.04 -0.02 1.77 16 12 N -0.70 -9.87 5.71 -60.27 -0.34 -10.21 16 13 C 0.44 6.34 7.71 -154.79 -1.19 5.15 16 14 C -0.29 -3.62 9.40 -39.11 -0.37 -3.98 16 15 C 0.17 2.04 11.29 -17.29 -0.20 1.85 16 16 N -0.56 -7.32 10.33 -10.81 -0.11 -7.43 16 17 C 0.37 4.87 6.90 -157.24 -1.09 3.79 16 18 C -0.04 -0.42 4.77 36.00 0.17 -0.25 16 19 S -0.07 -0.84 21.91 -107.50 -2.35 -3.19 16 20 C -0.08 -0.82 6.11 -39.03 -0.24 -1.06 16 21 C -0.14 -1.17 9.36 -39.36 -0.37 -1.54 16 22 C -0.10 -0.73 10.04 -39.61 -0.40 -1.13 16 23 C -0.13 -0.89 10.04 -39.54 -0.40 -1.29 16 24 C -0.10 -0.73 10.04 -39.62 -0.40 -1.13 16 25 C -0.10 -0.90 9.79 -39.37 -0.39 -1.29 16 26 N -0.57 -8.29 10.37 -9.96 -0.10 -8.39 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.02 0.49 8.14 -51.92 -0.42 0.06 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 0.98 7.97 -51.93 -0.41 0.56 16 33 H 0.07 0.96 7.97 -51.93 -0.41 0.55 16 34 H 0.41 5.50 8.60 -40.82 -0.35 5.15 16 35 H 0.15 1.65 6.87 -52.49 -0.36 1.29 16 36 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.11 1.07 7.74 -51.93 -0.40 0.67 16 38 H 0.11 1.03 7.76 -51.92 -0.40 0.63 16 39 H 0.12 0.91 5.88 -52.49 -0.31 0.60 16 40 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.12 0.57 8.06 -52.49 -0.42 0.14 16 42 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 43 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 379.35 15.07 5.72 5.72 Total: -1.00 -31.20 379.35 -13.05 -44.25 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -6.00 Total: 2.46 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -5.56 Total: -14.04 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.18 Total: -51.27 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -0.84 SS G_CDS: -2.35 Total: -3.19 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.20 -13.05 -44.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892327746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.592 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds