Wall clock time and date at job start Sat Apr 11 2020 02:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 117.00001 * 2 1 4 4 O 1.20823 * 119.99829 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99679 * 180.02562 * 3 2 1 6 6 H 1.08993 * 109.47072 * 60.00533 * 5 3 2 7 7 N 1.46905 * 109.46865 * 180.02562 * 5 3 2 8 8 C 1.46899 * 110.99917 * 275.00204 * 7 5 3 9 9 C 1.52999 * 109.46931 * 179.97438 * 8 7 5 10 10 H 1.09003 * 109.47057 * 59.99984 * 9 8 7 11 11 O 1.42899 * 109.47660 * 300.00228 * 9 8 7 12 12 C 1.50704 * 109.47066 * 179.97438 * 9 8 7 13 13 H 1.07996 * 120.00065 * 0.02562 * 12 9 8 14 14 C 1.37881 * 119.99599 * 180.02562 * 12 9 8 15 15 N 1.31508 * 120.00369 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 119.99528 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47417 * 90.00161 * 16 14 12 18 18 H 1.48499 * 109.47221 * 210.00211 * 16 14 12 19 19 H 1.48503 * 109.47386 * 329.99826 * 16 14 12 20 20 C 1.50698 * 109.47379 * 299.99979 * 5 3 2 21 21 C 1.36122 * 120.17335 * 265.00509 * 20 5 3 22 22 C 1.39329 * 120.99059 * 179.97438 * 21 20 5 23 23 C 1.36135 * 120.98917 * 0.02562 * 22 21 20 24 24 C 1.40496 * 119.64918 * 359.97438 * 23 22 21 25 25 C 1.40549 * 121.28759 * 180.02562 * 24 23 22 26 26 C 1.36094 * 119.65575 * 179.97438 * 25 24 23 27 27 C 1.39379 * 120.99110 * 0.02874 * 26 25 24 28 28 C 1.36095 * 120.99632 * 359.95136 * 27 26 25 29 29 C 1.40498 * 120.17148 * 84.97722 * 20 5 3 30 30 H 1.09007 * 109.46808 * 299.99717 * 1 2 3 31 31 H 1.08995 * 109.47365 * 59.99501 * 1 2 3 32 32 H 1.09003 * 109.47109 * 180.02562 * 1 2 3 33 33 H 1.00896 * 110.99638 * 151.04212 * 7 5 3 34 34 H 1.08996 * 109.47416 * 299.99834 * 8 7 5 35 35 H 1.09003 * 109.47263 * 59.99872 * 8 7 5 36 36 H 0.96708 * 113.99698 * 299.99961 * 11 9 8 37 37 H 0.97003 * 119.99796 * 180.02562 * 15 14 12 38 38 H 1.08000 * 119.50985 * 359.97438 * 21 20 5 39 39 H 1.07998 * 119.50932 * 180.02562 * 22 21 20 40 40 H 1.07993 * 120.17200 * 179.70094 * 23 22 21 41 41 H 1.08001 * 120.17178 * 359.93364 * 25 24 23 42 42 H 1.07990 * 119.50654 * 179.97438 * 26 25 24 43 43 H 1.08003 * 119.50208 * 179.97438 * 27 26 25 44 44 H 1.07993 * 120.17244 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8908 7 7 3.9829 2.6835 0.0002 8 6 4.0169 3.2231 -1.3657 9 6 4.4534 4.6890 -1.3242 10 1 5.4466 4.7599 -0.8806 11 8 3.5261 5.4402 -0.5382 12 6 4.4889 5.2424 -2.7255 13 1 4.2260 4.6119 -3.5619 14 6 4.8571 6.5538 -2.9396 15 7 5.1777 7.3215 -1.9211 16 14 4.9004 7.2400 -4.6764 17 1 3.5745 7.8174 -5.0139 18 1 5.9382 8.2985 -4.7648 19 1 5.2231 6.1496 -5.6316 20 6 4.1057 0.5914 1.2295 21 6 4.3933 1.3170 2.3447 22 6 4.8921 0.7026 3.4915 23 6 5.1069 -0.6411 3.5297 24 6 4.8218 -1.4231 2.3978 25 6 5.0299 -2.8131 2.3996 26 6 4.7419 -3.5385 1.2848 27 6 4.2430 -2.9239 0.1376 28 6 4.0283 -1.5805 0.0992 29 6 4.3138 -0.7981 1.2314 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 4.8760 2.7962 0.4559 34 1 4.7240 2.6500 -1.9653 35 1 3.0237 3.1526 -1.8091 36 1 2.6197 5.4218 -0.8750 37 1 5.4363 8.2442 -2.0718 38 1 4.2324 2.3849 2.3407 39 1 5.1117 1.3014 4.3630 40 1 5.4985 -1.1029 4.4240 41 1 5.4171 -3.3028 3.2810 42 1 4.9032 -4.6063 1.2887 43 1 4.0230 -3.5228 -0.7338 44 1 3.6409 -1.1182 -0.7965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932220510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:17:47 Heat of formation + Delta-G solvation = -100.488256 kcal Electronic energy + Delta-G solvation = -28121.159982 eV Core-core repulsion = 24195.823529 eV Total energy + Delta-G solvation = -3925.336453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.00337 -40.97475 -38.70150 -37.55194 -37.35174 -36.18204 -34.23978 -33.71049 -31.25314 -31.07552 -29.53457 -29.16660 -27.33503 -25.63489 -24.25600 -23.80132 -22.97938 -22.34916 -21.24488 -19.05784 -18.84798 -18.27692 -18.17858 -17.67861 -17.23651 -17.04559 -16.65584 -16.63594 -16.02984 -15.54444 -15.46784 -14.98438 -14.92491 -14.77587 -14.49865 -14.31348 -14.19145 -14.06874 -13.82866 -13.49118 -13.19961 -13.02057 -12.84429 -12.79703 -12.67370 -12.58933 -12.24190 -12.03779 -11.83743 -11.81141 -11.77012 -11.51228 -11.05812 -10.74040 -10.72456 -10.11639 -9.52834 -9.47454 -8.78553 -8.14007 -6.40160 -0.43724 0.11486 1.01951 1.22806 1.39823 1.40642 1.51337 1.62768 2.13261 2.37994 3.05094 3.12726 3.21411 3.39917 3.80437 3.88764 3.91912 4.01989 4.08517 4.20746 4.28159 4.29304 4.30149 4.34960 4.37268 4.49728 4.54492 4.55615 4.66031 4.69116 4.83873 4.96063 5.03172 5.24096 5.28296 5.32233 5.38665 5.48559 5.58120 5.65384 5.68651 5.73979 5.83636 5.91816 6.07732 6.13441 6.27029 6.71625 6.78818 7.33181 7.56679 8.90663 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.003182 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.097125 B = 8798.742231 C = 9226.889359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.466 3.534 4 O -0.512 6.512 5 C 0.144 3.856 6 H 0.095 0.905 7 N -0.664 5.664 8 C 0.055 3.945 9 C 0.237 3.763 10 H 0.026 0.974 11 O -0.568 6.568 12 C -0.589 4.589 13 H 0.058 0.942 14 C 0.026 3.974 15 N -0.898 5.898 16 Si 0.962 3.038 17 H -0.275 1.275 18 H -0.281 1.281 19 H -0.263 1.263 20 C -0.099 4.099 21 C -0.104 4.104 22 C -0.127 4.127 23 C -0.092 4.092 24 C -0.073 4.073 25 C -0.107 4.107 26 C -0.120 4.120 27 C -0.112 4.112 28 C -0.118 4.118 29 C -0.048 4.048 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.135 0.865 33 H 0.355 0.645 34 H 0.036 0.964 35 H 0.054 0.946 36 H 0.350 0.650 37 H 0.262 0.738 38 H 0.123 0.877 39 H 0.146 0.854 40 H 0.160 0.840 41 H 0.154 0.846 42 H 0.151 0.849 43 H 0.143 0.857 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.264 -25.612 8.829 27.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.308 3.692 4 O -0.399 6.399 5 C 0.033 3.967 6 H 0.112 0.888 7 N -0.299 5.299 8 C -0.074 4.074 9 C 0.179 3.821 10 H 0.044 0.956 11 O -0.371 6.371 12 C -0.627 4.627 13 H 0.076 0.924 14 C -0.177 4.177 15 N -0.535 5.535 16 Si 0.786 3.214 17 H -0.201 1.201 18 H -0.207 1.207 19 H -0.188 1.188 20 C -0.100 4.100 21 C -0.122 4.122 22 C -0.144 4.144 23 C -0.110 4.110 24 C -0.073 4.073 25 C -0.125 4.125 26 C -0.138 4.138 27 C -0.130 4.130 28 C -0.136 4.136 29 C -0.048 4.048 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.153 0.847 33 H 0.178 0.822 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.194 0.806 37 H 0.071 0.929 38 H 0.141 0.859 39 H 0.164 0.836 40 H 0.177 0.823 41 H 0.172 0.828 42 H 0.169 0.831 43 H 0.161 0.839 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.515 -24.787 9.378 26.621 hybrid contribution -0.028 0.712 -1.688 1.832 sum -2.542 -24.075 7.690 25.401 Atomic orbital electron populations 1.23506 0.75170 1.05555 1.02148 1.86516 1.24548 1.32128 1.83955 1.23804 0.91847 0.81492 0.72099 1.90672 1.66981 1.37444 1.44754 1.19769 0.87808 0.90625 0.98529 0.88755 1.59927 1.36515 1.13633 1.19802 1.22598 0.99766 0.97648 0.87345 1.19156 0.88351 0.85020 0.89571 0.95626 1.86480 1.20198 1.75376 1.55049 1.22000 1.49043 0.97667 0.94031 0.92352 1.25901 0.93432 0.97399 1.00933 1.70219 1.43854 1.07158 1.32220 0.85534 0.77939 0.78187 0.79745 1.20058 1.20655 1.18763 1.19232 1.02902 0.93353 0.94472 1.20998 0.97451 1.00789 0.92962 1.21088 0.99533 0.95752 0.98066 1.21442 0.97979 0.93568 0.98021 1.18371 1.00290 0.95117 0.93477 1.21340 0.99516 0.91615 0.99995 1.21223 0.98389 1.01476 0.92662 1.21172 0.98090 0.94254 0.99447 1.21114 1.00148 0.95021 0.97295 1.17988 0.99651 0.91939 0.95231 0.92635 0.92263 0.84663 0.82242 0.94552 0.92705 0.80584 0.92946 0.85913 0.83633 0.82279 0.82815 0.83110 0.83886 0.86083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.82 16 2 O -0.36 -9.80 9.17 -51.40 -0.47 -10.27 16 3 C 0.47 15.86 7.12 71.24 0.51 16.37 16 4 O -0.51 -21.19 15.67 21.97 0.34 -20.85 16 5 C 0.14 4.60 2.14 43.42 0.09 4.69 16 6 H 0.10 2.79 6.36 -2.39 -0.02 2.78 16 7 N -0.66 -25.19 4.95 -499.36 -2.47 -27.66 16 8 C 0.06 2.39 4.98 86.30 0.43 2.82 16 9 C 0.24 12.59 3.03 29.85 0.09 12.68 16 10 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 11 O -0.57 -31.91 12.60 -148.98 -1.88 -33.79 16 12 C -0.59 -33.28 8.76 25.60 0.22 -33.05 16 13 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 14 C 0.03 1.48 5.40 84.66 0.46 1.94 16 15 N -0.90 -54.81 12.84 21.45 0.28 -54.54 16 16 Si 0.96 44.20 29.54 68.60 2.03 46.22 16 17 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 20 C -0.10 -2.81 4.86 -19.81 -0.10 -2.91 16 21 C -0.10 -2.87 8.79 22.04 0.19 -2.67 16 22 C -0.13 -2.73 9.95 22.04 0.22 -2.51 16 23 C -0.09 -1.71 9.77 22.33 0.22 -1.49 16 24 C -0.07 -1.52 5.74 -21.30 -0.12 -1.65 16 25 C -0.11 -1.65 9.77 22.33 0.22 -1.43 16 26 C -0.12 -1.69 9.95 22.05 0.22 -1.47 16 27 C -0.11 -1.88 9.95 22.05 0.22 -1.66 16 28 C -0.12 -2.61 8.43 22.34 0.19 -2.42 16 29 C -0.05 -1.19 5.72 -21.30 -0.12 -1.31 16 30 H 0.05 1.23 8.13 -2.38 -0.02 1.21 16 31 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 32 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.36 12.99 7.26 -89.70 -0.65 12.34 16 34 H 0.04 1.47 8.06 -2.39 -0.02 1.45 16 35 H 0.05 2.47 7.62 -2.39 -0.02 2.45 16 36 H 0.35 18.60 9.04 -74.05 -0.67 17.93 16 37 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.12 3.78 6.90 -2.91 -0.02 3.76 16 39 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 40 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 42 H 0.15 1.19 8.06 -2.92 -0.02 1.16 16 43 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 44 H 0.12 2.69 6.07 -2.91 -0.02 2.68 16 Total: -1.00 -74.28 371.21 1.68 -72.60 By element: Atomic # 1 Polarization: 40.81 SS G_CDS: -0.28 Total: 40.53 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 4.13 Total: -12.25 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -2.20 Total: -82.19 kcal Atomic # 8 Polarization: -62.90 SS G_CDS: -2.00 Total: -64.91 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -74.28 1.68 -72.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932220510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.888 kcal (2) G-P(sol) polarization free energy of solvation -74.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds