Wall clock time and date at job start Sat Apr 11 2020 02:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00197 * 2 1 4 4 H 1.48501 * 109.46839 * 239.99611 * 3 2 1 5 5 H 1.48493 * 109.47110 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47126 * 119.99696 * 3 2 1 7 7 C 1.38822 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99915 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99936 * 0.02562 * 7 2 1 10 10 C 1.47021 * 125.64933 * 359.96176 * 9 7 2 11 11 C 1.54326 * 107.27002 * 181.08907 * 10 9 7 12 12 H 1.09003 * 110.71705 * 140.55404 * 11 10 9 13 13 O 1.42892 * 110.72204 * 263.82884 * 11 10 9 14 14 C 1.55151 * 102.94313 * 22.19392 * 11 10 9 15 15 H 1.09004 * 111.00792 * 82.56822 * 14 11 10 16 16 C 1.52997 * 111.00665 * 206.42351 * 14 11 10 17 17 N 1.46503 * 109.47329 * 178.65028 * 16 14 11 18 18 C 1.34770 * 119.99968 * 180.02562 * 17 16 14 19 19 O 1.21580 * 120.00336 * 359.97438 * 18 17 16 20 20 C 1.47657 * 120.00178 * 180.02562 * 18 17 16 21 21 C 1.40210 * 119.96737 * 359.71695 * 20 18 17 22 22 C 1.36325 * 120.66297 * 179.75585 * 21 20 18 23 23 C 1.39372 * 120.23543 * 0.52598 * 22 21 20 24 24 N 1.37397 * 133.24422 * 179.76565 * 23 22 21 25 25 H 0.96996 * 125.01033 * 359.94860 * 24 23 22 26 26 C 1.36861 * 109.97835 * 179.97438 * 24 23 22 27 27 C 1.34187 * 109.96140 * 359.97438 * 26 24 23 28 28 C 1.40875 * 119.64316 * 359.73694 * 23 22 21 29 29 C 1.39150 * 119.97414 * 179.97438 * 20 18 17 30 30 C 1.47421 * 125.64616 * 179.97438 * 9 7 2 31 31 H 0.97002 * 119.99882 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.88310 * 300.50772 * 10 9 7 33 33 H 1.09002 * 109.88672 * 61.51812 * 10 9 7 34 34 H 0.96706 * 114.00295 * 293.52015 * 13 11 10 35 35 H 1.09006 * 109.46931 * 298.64492 * 16 14 11 36 36 H 1.08999 * 109.47347 * 58.64279 * 16 14 11 37 37 H 0.96996 * 119.99753 * 359.97438 * 17 16 14 38 38 H 1.07989 * 119.66934 * 0.02562 * 21 20 18 39 39 H 1.08001 * 119.87915 * 180.23572 * 22 21 20 40 40 H 1.08001 * 125.01590 * 179.97438 * 26 24 23 41 41 H 1.08000 * 126.54029 * 180.02562 * 27 26 24 42 42 H 1.07999 * 120.30167 * 359.95082 * 29 20 18 43 43 H 1.09002 * 110.36865 * 37.00629 * 30 9 7 44 44 H 1.08994 * 110.46657 * 274.72777 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2023 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1376 -2.5328 0.0008 11 6 -0.4485 -4.0441 0.0287 12 1 -1.2985 -4.2509 0.6791 13 8 -0.6889 -4.5353 -1.2914 14 6 0.8518 -4.6557 0.6137 15 1 0.8570 -4.5951 1.7020 16 6 1.0368 -6.1008 0.1463 17 7 2.2881 -6.6338 0.6908 18 6 2.6610 -7.8979 0.4093 19 8 1.9589 -8.5961 -0.2963 20 6 3.9219 -8.4354 0.9585 21 6 4.7335 -7.6281 1.7681 22 6 5.8979 -8.1114 2.2867 23 6 6.3023 -9.4158 2.0081 24 7 7.3976 -10.1602 2.3739 25 1 8.1209 -9.8456 2.9385 26 6 7.3180 -11.4108 1.8237 27 6 6.1945 -11.5215 1.0984 28 6 5.4982 -10.2351 1.1915 29 6 4.3061 -9.7408 0.6679 30 6 1.9334 -3.7312 0.0005 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5575 -2.0515 0.8840 33 1 -0.5548 -2.0827 -0.9000 34 1 -1.4905 -4.1833 -1.7022 35 1 0.2009 -6.7060 0.4972 36 1 1.0734 -6.1285 -0.9428 37 1 2.8484 -6.0767 1.2534 38 1 4.4311 -6.6147 1.9866 39 1 6.5116 -7.4798 2.9119 40 1 8.0512 -12.1931 1.9542 41 1 5.8661 -12.3923 0.5504 42 1 3.6856 -10.3650 0.0420 43 1 2.8332 -3.7404 0.6156 44 1 2.1672 -4.0437 -1.0171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958366804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:18:10 Heat of formation + Delta-G solvation = 4.114717 kcal Electronic energy + Delta-G solvation = -27051.141180 eV Core-core repulsion = 23162.633404 eV Total energy + Delta-G solvation = -3888.507776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.53700 -39.66894 -38.27188 -36.67737 -34.90265 -34.53463 -32.29926 -32.10245 -30.38355 -29.33202 -28.95440 -27.65915 -25.56955 -24.14077 -22.82546 -22.55438 -21.14095 -20.55873 -19.99619 -19.59824 -18.40720 -17.44225 -17.32151 -16.48765 -16.14526 -15.71172 -15.11209 -14.82651 -14.68326 -14.39335 -14.24414 -14.01219 -13.87830 -13.66819 -13.40592 -13.32146 -12.94935 -12.73944 -12.57028 -12.52517 -11.92286 -11.66170 -11.36866 -11.21019 -11.11921 -10.80091 -10.63120 -10.44288 -10.12165 -10.08017 -10.05158 -9.80708 -9.67146 -9.15904 -8.85447 -8.65658 -8.47758 -8.04727 -6.86241 -5.74433 -3.07348 0.81097 1.02704 2.41228 2.77711 2.97245 3.34178 3.38827 3.43230 3.44348 3.87023 4.40147 4.46676 4.52078 4.72801 4.76901 4.83251 5.01395 5.13210 5.19504 5.28352 5.34919 5.41706 5.47512 5.55760 5.62878 5.65172 5.81856 5.94227 6.06234 6.11790 6.13505 6.24519 6.34952 6.42049 6.42880 6.43304 6.54896 6.68162 6.81052 6.92514 7.14848 7.39642 7.48785 7.69191 7.74133 8.21240 8.25970 8.39565 9.18421 9.79152 10.45068 11.37560 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.017109 B = 0.002462 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.180703 B =11370.500083 C =12784.396288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.010 4.010 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.153 3.847 11 C 0.083 3.917 12 H 0.057 0.943 13 O -0.563 6.563 14 C -0.110 4.110 15 H 0.088 0.912 16 C 0.140 3.860 17 N -0.722 5.722 18 C 0.560 3.440 19 O -0.545 6.545 20 C -0.161 4.161 21 C -0.065 4.065 22 C -0.136 4.136 23 C 0.114 3.886 24 N -0.594 5.594 25 H 0.416 0.584 26 C 0.043 3.957 27 C -0.193 4.193 28 C -0.124 4.124 29 C -0.002 4.002 30 C 0.145 3.855 31 H 0.253 0.747 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.375 0.625 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.399 0.601 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.171 0.829 41 H 0.149 0.851 42 H 0.137 0.863 43 H 0.035 0.965 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.339 -20.658 6.574 24.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.028 3.972 11 C 0.023 3.977 12 H 0.075 0.925 13 O -0.369 6.369 14 C -0.130 4.130 15 H 0.106 0.894 16 C 0.017 3.983 17 N -0.374 5.374 18 C 0.348 3.652 19 O -0.424 6.424 20 C -0.166 4.166 21 C -0.085 4.085 22 C -0.157 4.157 23 C 0.006 3.994 24 N -0.197 5.197 25 H 0.253 0.747 26 C -0.082 4.082 27 C -0.217 4.217 28 C -0.129 4.129 29 C -0.021 4.021 30 C 0.019 3.981 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.222 0.778 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.234 0.766 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.189 0.811 41 H 0.167 0.833 42 H 0.155 0.845 43 H 0.054 0.946 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 11.425 -21.211 6.251 24.890 hybrid contribution 0.608 1.764 0.510 1.934 sum 12.033 -19.447 6.761 23.847 Atomic orbital electron populations 1.69923 1.04906 1.25182 1.57292 1.24799 0.95756 0.97705 1.02304 0.86172 0.78434 0.83102 0.77896 1.21169 1.21609 1.21180 1.19027 0.90429 0.82375 1.43646 0.90441 1.44365 1.01381 0.99957 1.87227 1.21858 0.85313 0.88424 1.01611 1.23110 0.95163 0.96182 0.83274 0.92515 1.86409 1.48790 1.71408 1.30276 1.22686 0.97112 0.93211 0.99951 0.89360 1.21184 0.84607 0.92647 0.99839 1.46009 1.25018 1.13590 1.52734 1.18124 0.85121 0.81660 0.80340 1.90761 1.54731 1.58557 1.38380 1.19677 0.97034 0.95540 1.04331 1.20698 0.93261 0.99188 0.95314 1.19668 0.98632 0.92645 1.04731 1.18441 0.88834 0.93574 0.98595 1.41793 1.20689 1.11658 1.45514 0.74699 1.21831 1.00118 0.87382 0.98912 1.21769 0.96277 0.97409 1.06283 1.19160 0.96360 0.94881 1.02452 1.20678 0.93069 0.93605 0.94771 1.21571 0.93636 0.85725 0.97199 0.93696 0.92993 0.93215 0.77815 0.91799 0.90113 0.76607 0.85120 0.85644 0.81139 0.83299 0.84481 0.94630 0.95612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.79 10.31 55.49 0.57 -26.22 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.26 10.28 -15.06 -0.15 -6.41 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -15.22 3.39 -170.06 -0.58 -15.79 16 10 C 0.15 3.61 5.14 -3.06 -0.02 3.59 16 11 C 0.08 1.52 4.08 -24.90 -0.10 1.42 16 12 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 13 O -0.56 -9.97 12.09 -35.23 -0.43 -10.40 16 14 C -0.11 -1.89 3.03 -88.46 -0.27 -2.15 16 15 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 16 C 0.14 2.26 4.74 -4.04 -0.02 2.24 16 17 N -0.72 -10.27 5.36 -61.31 -0.33 -10.59 16 18 C 0.56 8.63 7.76 -12.42 -0.10 8.53 16 19 O -0.55 -10.25 16.33 5.30 0.09 -10.16 16 20 C -0.16 -2.09 5.87 -104.97 -0.62 -2.71 16 21 C -0.06 -0.68 9.46 -39.53 -0.37 -1.06 16 22 C -0.14 -1.28 10.00 -39.85 -0.40 -1.68 16 23 C 0.11 1.12 7.27 -83.95 -0.61 0.51 16 24 N -0.59 -4.02 6.05 -10.61 -0.06 -4.08 16 25 H 0.42 1.52 8.96 -40.82 -0.37 1.16 16 26 C 0.04 0.27 11.81 -16.73 -0.20 0.07 16 27 C -0.19 -1.64 11.09 -37.65 -0.42 -2.06 16 28 C -0.12 -1.38 6.36 -105.16 -0.67 -2.05 16 29 C 0.00 -0.02 9.64 -38.86 -0.37 -0.40 16 30 C 0.14 2.97 6.40 -2.52 -0.02 2.95 16 31 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.05 1.34 7.38 -51.93 -0.38 0.96 16 33 H 0.05 1.30 7.43 -51.93 -0.39 0.92 16 34 H 0.37 5.25 9.12 45.56 0.42 5.66 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.49 7.42 -51.93 -0.39 1.10 16 37 H 0.40 4.80 6.34 -40.82 -0.26 4.54 16 38 H 0.13 1.15 6.36 -52.49 -0.33 0.81 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.17 0.44 8.06 -52.49 -0.42 0.02 16 41 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 42 H 0.14 1.72 7.64 -52.49 -0.40 1.32 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.03 0.57 8.00 -51.93 -0.42 0.15 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -35.58 364.38 -9.72 -45.29 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.02 Total: 9.11 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -4.43 Total: 0.44 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.40 Total: -56.69 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.34 Total: -20.56 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.58 -9.72 -45.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958366804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.406 kcal (2) G-P(sol) polarization free energy of solvation -35.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds