Wall clock time and date at job start Sat Apr 11 2020 02:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86806 * 119.99833 * 2 1 4 4 H 1.48496 * 109.47045 * 269.99811 * 3 2 1 5 5 H 1.48497 * 109.47302 * 30.00555 * 3 2 1 6 6 H 1.48503 * 109.46625 * 150.00289 * 3 2 1 7 7 C 1.38807 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99829 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00354 * 359.97438 * 7 2 1 10 10 C 1.47029 * 125.64777 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.27496 * 178.89694 * 10 9 7 12 12 H 1.08998 * 110.87257 * 219.37790 * 11 10 9 13 13 O 1.42899 * 110.71823 * 96.16787 * 11 10 9 14 14 C 1.55160 * 102.94006 * 337.80876 * 11 10 9 15 15 H 1.08997 * 111.00590 * 277.38856 * 14 11 10 16 16 C 1.53002 * 111.00541 * 153.57429 * 14 11 10 17 17 N 1.46492 * 109.47380 * 175.00015 * 16 14 11 18 18 C 1.34770 * 120.00166 * 180.02562 * 17 16 14 19 19 O 1.21584 * 120.00132 * 359.97438 * 18 17 16 20 20 C 1.47662 * 120.00229 * 180.02562 * 18 17 16 21 21 C 1.40204 * 119.97041 * 359.97438 * 20 18 17 22 22 C 1.36325 * 120.66686 * 179.97438 * 21 20 18 23 23 C 1.39367 * 120.23470 * 0.02562 * 22 21 20 24 24 N 1.37400 * 133.24450 * 179.97438 * 23 22 21 25 25 H 0.97001 * 125.00358 * 359.96034 * 24 23 22 26 26 C 1.36855 * 109.98157 * 179.97438 * 24 23 22 27 27 C 1.34197 * 109.96153 * 0.02562 * 26 24 23 28 28 C 1.40872 * 119.64244 * 0.02562 * 23 22 21 29 29 C 1.39151 * 119.97076 * 179.97438 * 20 18 17 30 30 C 1.47419 * 125.65298 * 179.97438 * 9 7 2 31 31 H 0.97002 * 119.99681 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.87988 * 59.48217 * 10 9 7 33 33 H 1.08993 * 110.01102 * 298.39169 * 10 9 7 34 34 H 0.96706 * 113.99208 * 66.48511 * 13 11 10 35 35 H 1.08995 * 109.47029 * 54.99737 * 16 14 11 36 36 H 1.08999 * 109.46653 * 295.00255 * 16 14 11 37 37 H 0.97002 * 120.00247 * 0.02562 * 17 16 14 38 38 H 1.08001 * 119.67130 * 359.97438 * 21 20 18 39 39 H 1.07994 * 119.87873 * 179.74456 * 22 21 20 40 40 H 1.07997 * 125.02499 * 180.02562 * 26 24 23 41 41 H 1.07995 * 126.54503 * 180.02562 * 27 26 24 42 42 H 1.07998 * 120.30507 * 0.02562 * 29 20 18 43 43 H 1.09000 * 110.36990 * 85.33155 * 30 9 7 44 44 H 1.09001 * 110.36567 * 323.01208 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1375 -2.5327 -0.0005 11 6 -0.4485 -4.0441 -0.0289 12 1 -1.2991 -4.2534 -0.6776 13 8 -0.6886 -4.5357 1.2912 14 6 0.8518 -4.6555 -0.6143 15 1 0.8564 -4.5951 -1.7026 16 6 1.0369 -6.1007 -0.1474 17 7 2.2058 -6.6826 -0.8116 18 6 2.5637 -7.9558 -0.5526 19 8 1.9167 -8.6214 0.2326 20 6 3.7422 -8.5422 -1.2217 21 6 4.4882 -7.7740 -2.1267 22 6 5.5790 -8.3009 -2.7520 23 6 5.9667 -9.6152 -2.4981 24 7 6.9930 -10.4007 -2.9646 25 1 7.6630 -10.1176 -3.6063 26 6 6.9302 -11.6415 -2.3906 27 6 5.8854 -11.7056 -1.5509 28 6 5.2248 -10.3978 -1.5917 29 6 4.1114 -9.8567 -0.9534 30 6 1.9334 -3.7311 -0.0016 31 1 -0.4850 0.8401 0.0004 32 1 -0.5576 -2.0512 -0.8836 33 1 -0.5566 -2.0849 0.9004 34 1 -1.4901 -4.1838 1.7022 35 1 0.1493 -6.6806 -0.4000 36 1 1.1867 -6.1173 0.9321 37 1 2.7222 -6.1515 -1.4378 38 1 4.1957 -6.7545 -2.3306 39 1 6.1420 -7.6990 -3.4499 40 1 7.6197 -12.4498 -2.5847 41 1 5.5880 -12.5581 -0.9583 42 1 3.5394 -10.4522 -0.2573 43 1 2.1664 -4.0429 1.0165 44 1 2.8330 -3.7399 -0.6171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958366805.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:18:13 Heat of formation + Delta-G solvation = 4.083115 kcal Electronic energy + Delta-G solvation = -27010.706351 eV Core-core repulsion = 23122.197205 eV Total energy + Delta-G solvation = -3888.509147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.54402 -39.67085 -38.27175 -36.68586 -34.89944 -34.54373 -32.30664 -32.11202 -30.38793 -29.33582 -28.95973 -27.66621 -25.55984 -24.14095 -22.81952 -22.56127 -21.14526 -20.54325 -20.06876 -19.59088 -18.41335 -17.43484 -17.31514 -16.50251 -16.14495 -15.72091 -15.11421 -14.82855 -14.68545 -14.40972 -14.25217 -13.99817 -13.88661 -13.65941 -13.40677 -13.27806 -12.96188 -12.77143 -12.57606 -12.53636 -11.92648 -11.66217 -11.36889 -11.21526 -11.12713 -10.82539 -10.61909 -10.45181 -10.10654 -10.08647 -10.03718 -9.80734 -9.68046 -9.15839 -8.86128 -8.66002 -8.48580 -8.05455 -6.86048 -5.74479 -3.07353 0.80322 1.01858 2.40509 2.76976 2.96457 3.33443 3.38228 3.43534 3.45517 3.86212 4.39382 4.46652 4.51359 4.72307 4.76161 4.82372 5.00610 5.13042 5.18878 5.27646 5.35208 5.41241 5.46663 5.56231 5.62435 5.64544 5.80997 5.94386 6.06002 6.11722 6.13247 6.23838 6.34220 6.41481 6.42623 6.43662 6.54209 6.68560 6.80276 6.92351 7.14121 7.39661 7.49118 7.68246 7.74423 8.21146 8.25905 8.38852 9.18532 9.79234 10.45099 11.37598 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.017683 B = 0.002413 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.038453 B =11602.436173 C =12942.128421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.010 4.010 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.153 3.847 11 C 0.083 3.917 12 H 0.057 0.943 13 O -0.563 6.563 14 C -0.109 4.109 15 H 0.088 0.912 16 C 0.142 3.858 17 N -0.723 5.723 18 C 0.560 3.440 19 O -0.545 6.545 20 C -0.162 4.162 21 C -0.065 4.065 22 C -0.136 4.136 23 C 0.114 3.886 24 N -0.594 5.594 25 H 0.416 0.584 26 C 0.043 3.957 27 C -0.193 4.193 28 C -0.124 4.124 29 C -0.002 4.002 30 C 0.145 3.855 31 H 0.252 0.748 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.375 0.625 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.398 0.602 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.171 0.829 41 H 0.149 0.851 42 H 0.137 0.863 43 H 0.026 0.974 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.564 -21.180 -7.748 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.028 3.972 11 C 0.023 3.977 12 H 0.075 0.925 13 O -0.369 6.369 14 C -0.129 4.129 15 H 0.107 0.893 16 C 0.018 3.982 17 N -0.374 5.374 18 C 0.347 3.653 19 O -0.424 6.424 20 C -0.166 4.166 21 C -0.085 4.085 22 C -0.157 4.157 23 C 0.005 3.995 24 N -0.197 5.197 25 H 0.253 0.747 26 C -0.082 4.082 27 C -0.217 4.217 28 C -0.128 4.128 29 C -0.021 4.021 30 C 0.019 3.981 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.222 0.778 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.234 0.766 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.189 0.811 41 H 0.167 0.833 42 H 0.155 0.845 43 H 0.044 0.956 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.692 -21.718 -7.366 25.303 hybrid contribution 0.542 1.733 -0.598 1.912 sum 11.233 -19.985 -7.964 24.270 Atomic orbital electron populations 1.69936 1.04906 1.25053 1.57413 1.24798 0.95759 0.97708 1.02345 0.86095 0.78603 0.83412 0.77524 1.21626 1.21679 1.20695 1.19071 0.90464 0.82365 1.43463 0.90386 1.44375 1.01379 0.99990 1.87214 1.21846 0.85325 0.88403 1.01596 1.23129 0.95141 0.96204 0.83274 0.92536 1.86414 1.48798 1.71396 1.30290 1.22683 0.97102 0.93205 0.99933 0.89344 1.21175 0.86820 0.92101 0.98070 1.46025 1.31552 1.13105 1.46725 1.18127 0.83948 0.81635 0.81549 1.90764 1.54661 1.60988 1.35970 1.19677 0.98766 0.95471 1.02673 1.20695 0.93786 0.99300 0.94696 1.19665 0.99636 0.92303 1.04074 1.18440 0.90480 0.93140 0.97392 1.41794 1.26417 1.11223 1.40219 0.74697 1.21832 1.00740 0.87767 0.97896 1.21774 0.98122 0.97061 1.04782 1.19163 0.97879 0.94860 1.00945 1.20681 0.92901 0.93219 0.95316 1.21592 0.93658 0.85693 0.97207 0.93757 0.92993 0.93245 0.77819 0.91699 0.90291 0.76639 0.85124 0.85650 0.81134 0.83294 0.84476 0.95603 0.94552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.81 10.31 55.49 0.57 -26.24 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 3 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.23 -6.24 10.28 -15.06 -0.15 -6.39 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -15.24 3.39 -170.07 -0.58 -15.82 16 10 C 0.15 3.62 5.14 -3.06 -0.02 3.60 16 11 C 0.08 1.52 4.09 -24.89 -0.10 1.41 16 12 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 13 O -0.56 -9.99 12.24 -35.23 -0.43 -10.42 16 14 C -0.11 -1.88 2.98 -88.47 -0.26 -2.14 16 15 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 16 C 0.14 2.27 4.60 -4.04 -0.02 2.25 16 17 N -0.72 -10.17 5.45 -61.31 -0.33 -10.51 16 18 C 0.56 8.57 7.76 -12.42 -0.10 8.48 16 19 O -0.55 -10.22 16.33 5.29 0.09 -10.13 16 20 C -0.16 -2.07 5.87 -104.97 -0.62 -2.69 16 21 C -0.06 -0.68 9.46 -39.53 -0.37 -1.05 16 22 C -0.14 -1.26 10.00 -39.85 -0.40 -1.66 16 23 C 0.11 1.11 7.27 -83.95 -0.61 0.50 16 24 N -0.59 -3.97 6.05 -10.61 -0.06 -4.03 16 25 H 0.42 1.49 8.96 -40.82 -0.37 1.12 16 26 C 0.04 0.27 11.81 -16.73 -0.20 0.07 16 27 C -0.19 -1.63 11.09 -37.64 -0.42 -2.05 16 28 C -0.12 -1.37 6.36 -105.15 -0.67 -2.03 16 29 C 0.00 -0.02 9.64 -38.86 -0.37 -0.40 16 30 C 0.14 2.97 6.64 -2.53 -0.02 2.96 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.05 1.34 7.38 -51.93 -0.38 0.96 16 33 H 0.05 1.29 7.43 -51.93 -0.39 0.91 16 34 H 0.37 5.25 9.12 45.56 0.42 5.67 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.45 7.55 -51.93 -0.39 1.06 16 37 H 0.40 4.69 6.48 -40.82 -0.26 4.43 16 38 H 0.13 1.12 6.36 -52.49 -0.33 0.78 16 39 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 40 H 0.17 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.14 1.71 7.64 -52.49 -0.40 1.31 16 43 H 0.03 0.57 7.91 -51.93 -0.41 0.16 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 364.84 15.07 5.50 5.50 Total: -1.00 -35.66 364.84 -9.72 -45.39 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -5.03 Total: 8.83 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -4.42 Total: 0.48 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.40 Total: -56.60 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.34 Total: -20.55 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.66 -9.72 -45.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958366805.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.470 kcal (2) G-P(sol) polarization free energy of solvation -35.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds