Wall clock time and date at job start Sat Apr 11 2020 02:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86806 * 119.99833 * 2 1 4 4 H 1.48496 * 109.47045 * 269.99811 * 3 2 1 5 5 H 1.48497 * 109.47302 * 30.00555 * 3 2 1 6 6 H 1.48503 * 109.46625 * 150.00289 * 3 2 1 7 7 C 1.38807 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99829 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00354 * 359.97438 * 7 2 1 10 10 C 1.47029 * 125.64777 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.27496 * 178.89694 * 10 9 7 12 12 H 1.08998 * 110.87257 * 219.37790 * 11 10 9 13 13 O 1.42899 * 110.71823 * 96.16787 * 11 10 9 14 14 C 1.55160 * 102.94006 * 337.80876 * 11 10 9 15 15 H 1.08997 * 111.00590 * 277.38856 * 14 11 10 16 16 C 1.53002 * 111.00541 * 153.57429 * 14 11 10 17 17 N 1.46492 * 109.47380 * 175.00015 * 16 14 11 18 18 C 1.34770 * 120.00166 * 180.02562 * 17 16 14 19 19 O 1.21584 * 120.00132 * 359.97438 * 18 17 16 20 20 C 1.47662 * 120.00229 * 180.02562 * 18 17 16 21 21 C 1.40204 * 119.97041 * 359.97438 * 20 18 17 22 22 C 1.36325 * 120.66686 * 179.97438 * 21 20 18 23 23 C 1.39367 * 120.23470 * 0.02562 * 22 21 20 24 24 N 1.37400 * 133.24450 * 179.97438 * 23 22 21 25 25 H 0.97001 * 125.00358 * 359.96034 * 24 23 22 26 26 C 1.36855 * 109.98157 * 179.97438 * 24 23 22 27 27 C 1.34197 * 109.96153 * 0.02562 * 26 24 23 28 28 C 1.40872 * 119.64244 * 0.02562 * 23 22 21 29 29 C 1.39151 * 119.97076 * 179.97438 * 20 18 17 30 30 C 1.47419 * 125.65298 * 179.97438 * 9 7 2 31 31 H 0.97002 * 119.99681 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.87988 * 59.48217 * 10 9 7 33 33 H 1.08993 * 110.01102 * 298.39169 * 10 9 7 34 34 H 0.96706 * 113.99208 * 66.48511 * 13 11 10 35 35 H 1.08995 * 109.47029 * 54.99737 * 16 14 11 36 36 H 1.08999 * 109.46653 * 295.00255 * 16 14 11 37 37 H 0.97002 * 120.00247 * 0.02562 * 17 16 14 38 38 H 1.08001 * 119.67130 * 359.97438 * 21 20 18 39 39 H 1.07994 * 119.87873 * 179.74456 * 22 21 20 40 40 H 1.07997 * 125.02499 * 180.02562 * 26 24 23 41 41 H 1.07995 * 126.54503 * 180.02562 * 27 26 24 42 42 H 1.07998 * 120.30507 * 0.02562 * 29 20 18 43 43 H 1.09000 * 110.36990 * 85.33155 * 30 9 7 44 44 H 1.09001 * 110.36567 * 323.01208 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1375 -2.5327 -0.0005 11 6 -0.4485 -4.0441 -0.0289 12 1 -1.2991 -4.2534 -0.6776 13 8 -0.6886 -4.5357 1.2912 14 6 0.8518 -4.6555 -0.6143 15 1 0.8564 -4.5951 -1.7026 16 6 1.0369 -6.1007 -0.1474 17 7 2.2058 -6.6826 -0.8116 18 6 2.5637 -7.9558 -0.5526 19 8 1.9167 -8.6214 0.2326 20 6 3.7422 -8.5422 -1.2217 21 6 4.4882 -7.7740 -2.1267 22 6 5.5790 -8.3009 -2.7520 23 6 5.9667 -9.6152 -2.4981 24 7 6.9930 -10.4007 -2.9646 25 1 7.6630 -10.1176 -3.6063 26 6 6.9302 -11.6415 -2.3906 27 6 5.8854 -11.7056 -1.5509 28 6 5.2248 -10.3978 -1.5917 29 6 4.1114 -9.8567 -0.9534 30 6 1.9334 -3.7311 -0.0016 31 1 -0.4850 0.8401 0.0004 32 1 -0.5576 -2.0512 -0.8836 33 1 -0.5566 -2.0849 0.9004 34 1 -1.4901 -4.1838 1.7022 35 1 0.1493 -6.6806 -0.4000 36 1 1.1867 -6.1173 0.9321 37 1 2.7222 -6.1515 -1.4378 38 1 4.1957 -6.7545 -2.3306 39 1 6.1420 -7.6990 -3.4499 40 1 7.6197 -12.4498 -2.5847 41 1 5.5880 -12.5581 -0.9583 42 1 3.5394 -10.4522 -0.2573 43 1 2.1664 -4.0429 1.0165 44 1 2.8330 -3.7399 -0.6171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958366805.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:18:12 Heat of formation + Delta-G solvation = -22.752882 kcal Electronic energy + Delta-G solvation = -27011.870048 eV Core-core repulsion = 23122.197205 eV Total energy + Delta-G solvation = -3889.672843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.22238 -40.86713 -39.80084 -37.52305 -36.40538 -36.08850 -33.95135 -32.96317 -31.74669 -30.50196 -29.75613 -29.30149 -27.24337 -25.59272 -24.00490 -23.33107 -22.21764 -21.75103 -21.46247 -20.88711 -19.18041 -19.05769 -18.53313 -17.88233 -17.17025 -16.82574 -16.73291 -16.32215 -15.76942 -15.51206 -15.37714 -15.34429 -14.96006 -14.81025 -14.71720 -14.37388 -14.27668 -14.02178 -13.68372 -13.53302 -13.37862 -13.12606 -13.05753 -12.68049 -12.51447 -12.34076 -12.08434 -11.92230 -11.87062 -11.76765 -11.56767 -10.98685 -10.79731 -10.77937 -10.70841 -10.11514 -9.24270 -8.90337 -8.72898 -7.85304 -5.20438 -0.05611 0.27401 1.46626 1.48429 1.56963 1.80738 1.93319 2.16680 2.24674 2.49405 2.96497 3.28513 3.37124 3.57496 3.69848 3.78539 3.92514 3.95181 3.97142 4.02347 4.19866 4.30338 4.43398 4.45088 4.58268 4.64647 4.71509 4.74350 4.85677 4.93596 4.97048 5.01299 5.08917 5.32104 5.35615 5.40236 5.42838 5.44685 5.54358 5.64236 5.71142 5.74259 6.09301 6.18268 6.56365 6.70013 6.94609 7.09869 7.23161 7.76452 8.41159 9.25016 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.017683 B = 0.002413 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.038453 B =11602.436173 C =12942.128421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.979 3.021 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.240 4.240 8 H 0.083 0.917 9 N -0.624 5.624 10 C 0.161 3.839 11 C 0.094 3.906 12 H 0.088 0.912 13 O -0.571 6.571 14 C -0.092 4.092 15 H 0.111 0.889 16 C 0.157 3.843 17 N -0.713 5.713 18 C 0.559 3.441 19 O -0.589 6.589 20 C -0.179 4.179 21 C -0.073 4.073 22 C -0.128 4.128 23 C 0.105 3.895 24 N -0.581 5.581 25 H 0.434 0.566 26 C 0.068 3.932 27 C -0.226 4.226 28 C -0.146 4.146 29 C -0.020 4.020 30 C 0.142 3.858 31 H 0.247 0.753 32 H 0.024 0.976 33 H 0.013 0.987 34 H 0.390 0.610 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.412 0.588 38 H 0.149 0.851 39 H 0.156 0.844 40 H 0.215 0.785 41 H 0.158 0.842 42 H 0.121 0.879 43 H 0.010 0.990 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.121 -22.270 -9.858 27.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.807 3.193 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.196 1.196 7 C -0.369 4.369 8 H 0.101 0.899 9 N -0.351 5.351 10 C 0.035 3.965 11 C 0.034 3.966 12 H 0.106 0.894 13 O -0.379 6.379 14 C -0.111 4.111 15 H 0.129 0.871 16 C 0.033 3.967 17 N -0.364 5.364 18 C 0.348 3.652 19 O -0.471 6.471 20 C -0.183 4.183 21 C -0.093 4.093 22 C -0.148 4.148 23 C -0.006 4.006 24 N -0.185 5.185 25 H 0.274 0.726 26 C -0.058 4.058 27 C -0.250 4.250 28 C -0.151 4.151 29 C -0.040 4.040 30 C 0.017 3.983 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.031 0.969 34 H 0.240 0.760 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.249 0.751 38 H 0.166 0.834 39 H 0.174 0.826 40 H 0.232 0.768 41 H 0.176 0.824 42 H 0.139 0.861 43 H 0.028 0.972 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.292 -22.817 -9.506 28.065 hybrid contribution -0.148 1.969 0.066 1.976 sum 13.144 -20.848 -9.440 26.392 Atomic orbital electron populations 1.70151 1.06219 1.25272 1.58470 1.25639 0.96678 1.00980 1.02703 0.85069 0.77544 0.79088 0.77574 1.20934 1.22297 1.19619 1.19464 0.91052 0.83640 1.42761 0.89928 1.44697 1.02336 1.01059 1.86968 1.21669 0.84492 0.91779 0.98550 1.22989 0.96844 0.92487 0.84261 0.89443 1.86397 1.50119 1.71142 1.30254 1.22575 0.94962 0.92757 1.00834 0.87144 1.20859 0.87740 0.91438 0.96694 1.45866 1.31067 1.12930 1.46573 1.18560 0.84218 0.81496 0.80908 1.90731 1.56266 1.62049 1.38016 1.19549 0.98648 0.95988 1.04142 1.20855 0.94106 0.99918 0.94445 1.19983 0.98955 0.92344 1.03557 1.18627 0.91140 0.93518 0.97267 1.41887 1.25764 1.10939 1.39883 0.72597 1.22499 0.99793 0.88072 0.95410 1.22062 0.99415 0.96737 1.06808 1.19471 0.97774 0.96531 1.01327 1.20673 0.93946 0.93389 0.96004 1.21696 0.95295 0.84337 0.96945 0.94397 0.95742 0.96866 0.76011 0.91300 0.92789 0.75079 0.83377 0.82604 0.76805 0.82397 0.86056 0.97203 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.56 10.31 21.65 0.22 -56.33 16 2 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 3 Si 0.98 45.45 29.55 68.60 2.03 47.48 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.24 -13.38 10.28 84.03 0.86 -12.51 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 9 N -0.62 -31.82 3.39 -691.99 -2.35 -34.17 16 10 C 0.16 7.72 5.14 86.73 0.45 8.16 16 11 C 0.09 3.39 4.09 31.78 0.13 3.52 16 12 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 13 O -0.57 -20.03 12.24 -148.98 -1.82 -21.86 16 14 C -0.09 -3.03 2.98 -9.40 -0.03 -3.05 16 15 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 16 C 0.16 4.93 4.60 86.38 0.40 5.32 16 17 N -0.71 -19.57 5.45 -466.17 -2.54 -22.11 16 18 C 0.56 17.41 7.76 86.73 0.67 18.08 16 19 O -0.59 -22.99 16.33 -3.98 -0.06 -23.06 16 20 C -0.18 -4.63 5.87 -20.09 -0.12 -4.75 16 21 C -0.07 -1.42 9.46 22.30 0.21 -1.21 16 22 C -0.13 -2.04 10.00 22.10 0.22 -1.82 16 23 C 0.10 1.80 7.27 39.19 0.28 2.08 16 24 N -0.58 -5.70 6.05 -187.49 -1.13 -6.84 16 25 H 0.43 1.25 8.96 -92.71 -0.83 0.42 16 26 C 0.07 0.61 11.81 82.99 0.98 1.59 16 27 C -0.23 -3.50 11.09 23.52 0.26 -3.24 16 28 C -0.15 -3.14 6.36 -20.21 -0.13 -3.27 16 29 C -0.02 -0.53 9.64 22.74 0.22 -0.31 16 30 C 0.14 5.78 6.64 86.86 0.58 6.36 16 31 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 32 H 0.02 1.30 7.38 -2.39 -0.02 1.28 16 33 H 0.01 0.72 7.43 -2.39 -0.02 0.70 16 34 H 0.39 10.82 9.12 -74.05 -0.68 10.14 16 35 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.05 2.00 7.55 -2.39 -0.02 1.98 16 37 H 0.41 9.01 6.48 -92.71 -0.60 8.41 16 38 H 0.15 2.20 6.36 -2.91 -0.02 2.18 16 39 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 40 H 0.22 -0.04 8.06 -2.91 -0.02 -0.07 16 41 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 42 H 0.12 3.35 7.64 -2.91 -0.02 3.33 16 43 H 0.01 0.45 7.91 -2.39 -0.02 0.43 16 44 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -80.55 364.84 -1.25 -81.80 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -1.04 Total: 23.47 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 5.46 Total: 11.62 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -5.80 Total: -119.45 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -1.89 Total: -44.92 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -80.55 -1.25 -81.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958366805.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.049 kcal (2) G-P(sol) polarization free energy of solvation -80.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds