Wall clock time and date at job start Sat Apr 11 2020 02:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99835 * 2 1 4 4 H 1.48498 * 109.47274 * 264.53508 * 3 2 1 5 5 H 1.48503 * 109.46991 * 24.53527 * 3 2 1 6 6 H 1.48506 * 109.47121 * 144.53143 * 3 2 1 7 7 C 1.38812 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00154 * 337.62510 * 7 2 1 9 9 N 1.36938 * 120.00058 * 157.61786 * 7 2 1 10 10 C 1.47020 * 125.64830 * 161.51584 * 9 7 2 11 11 C 1.54327 * 107.27225 * 178.90782 * 10 9 7 12 12 H 1.09002 * 110.72013 * 96.34590 * 11 10 9 13 13 C 1.52991 * 110.72484 * 219.44608 * 11 10 9 14 14 N 1.46506 * 109.47074 * 293.54878 * 13 11 10 15 15 C 1.34770 * 119.99959 * 180.02562 * 14 13 11 16 16 O 1.21580 * 120.00615 * 359.97438 * 15 14 13 17 17 C 1.47656 * 119.99803 * 179.97438 * 15 14 13 18 18 C 1.40207 * 119.97561 * 359.97438 * 17 15 14 19 19 C 1.36320 * 120.66645 * 179.74562 * 18 17 15 20 20 C 1.39366 * 120.23858 * 0.25043 * 19 18 17 21 21 N 1.37401 * 133.24017 * 180.02562 * 20 19 18 22 22 H 0.96992 * 125.01350 * 359.93846 * 21 20 19 23 23 C 1.36865 * 109.97495 * 179.97438 * 21 20 19 24 24 C 1.34190 * 109.95857 * 0.02562 * 23 21 20 25 25 C 1.40863 * 119.64363 * 0.02562 * 20 19 18 26 26 C 1.39155 * 119.97379 * 180.25390 * 17 15 14 27 27 C 1.55156 * 102.94114 * 337.80920 * 11 10 9 28 28 H 1.08997 * 111.00741 * 277.42671 * 27 11 10 29 29 O 1.42905 * 111.00308 * 153.57125 * 27 11 10 30 30 C 1.47424 * 125.64570 * 341.48182 * 9 7 2 31 31 H 0.96997 * 120.00479 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.88230 * 59.49389 * 10 9 7 33 33 H 1.09001 * 109.88590 * 298.32766 * 10 9 7 34 34 H 1.09001 * 109.47779 * 173.54810 * 13 11 10 35 35 H 1.09004 * 109.47115 * 53.54534 * 13 11 10 36 36 H 0.97000 * 119.99775 * 359.97438 * 14 13 11 37 37 H 1.07995 * 119.66137 * 0.02562 * 18 17 15 38 38 H 1.08002 * 119.87753 * 180.27386 * 19 18 17 39 39 H 1.07998 * 125.01796 * 179.97438 * 23 21 20 40 40 H 1.08006 * 126.53874 * 180.02562 * 24 23 21 41 41 H 1.08003 * 120.30136 * 359.97438 * 26 17 15 42 42 H 0.96705 * 113.99761 * 179.97438 * 29 27 11 43 43 H 1.08992 * 110.37076 * 322.99715 * 30 9 7 44 44 H 1.09003 * 110.37074 * 85.21308 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6131 1.9798 -1.3937 5 1 1.3946 2.6832 0.5814 6 1 3.4852 1.4763 0.8124 7 6 2.0103 -1.2021 0.0005 8 1 1.5313 -2.1021 0.3570 9 7 3.3023 -1.2470 -0.4510 10 6 4.2726 -2.3144 -0.1671 11 6 5.5798 -1.9530 -0.9035 12 1 6.2743 -1.4489 -0.2315 13 6 6.2243 -3.2024 -1.5071 14 7 6.6708 -4.0902 -0.4306 15 6 7.2724 -5.2591 -0.7270 16 8 7.4442 -5.5773 -1.8878 17 6 7.7229 -6.1536 0.3580 18 6 7.5251 -5.7860 1.6965 19 6 7.9308 -6.6033 2.7092 20 6 8.5543 -7.8168 2.4248 21 7 9.0588 -8.8232 3.2125 22 1 9.0503 -8.8282 4.1824 23 6 9.5758 -9.8174 2.4267 24 6 9.4298 -9.4999 1.1311 25 6 8.7641 -8.1950 1.0842 26 6 8.3488 -7.3580 0.0513 27 6 5.0950 -0.9914 -2.0204 28 1 4.7175 -1.5477 -2.8784 29 8 6.1366 -0.0947 -2.4120 30 6 3.9503 -0.2332 -1.3029 31 1 -0.4851 0.8400 -0.0004 32 1 3.8924 -3.2680 -0.5333 33 1 4.4557 -2.3733 0.9058 34 1 7.0800 -2.9116 -2.1166 35 1 5.4957 -3.7230 -2.1286 36 1 6.5341 -3.8362 0.4955 37 1 7.0424 -4.8479 1.9273 38 1 7.7680 -6.3095 3.7357 39 1 10.0344 -10.7232 2.7950 40 1 9.7426 -10.0931 0.2845 41 1 8.5069 -7.6433 -0.9783 42 1 5.8805 0.5255 -3.1083 43 1 3.2411 0.1601 -2.0310 44 1 4.3529 0.5747 -0.6919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958366806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:18:16 Heat of formation + Delta-G solvation = 6.073167 kcal Electronic energy + Delta-G solvation = -27021.934177 eV Core-core repulsion = 23133.511325 eV Total energy + Delta-G solvation = -3888.422852 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.57726 -39.80778 -38.56342 -36.74696 -35.42881 -34.77942 -32.39744 -32.24111 -30.77401 -29.63084 -29.06175 -27.88703 -26.02377 -24.05971 -22.76477 -22.60115 -21.25739 -21.13849 -20.18356 -19.83928 -18.45552 -17.61563 -17.27170 -16.77093 -16.44959 -15.83277 -15.43332 -15.25597 -14.82170 -14.54511 -14.35089 -14.24305 -13.89952 -13.83327 -13.44142 -13.33028 -13.11101 -13.01232 -12.78719 -12.66181 -12.20986 -12.10549 -11.73141 -11.40245 -11.31066 -11.15253 -10.93415 -10.60969 -10.44836 -10.13973 -10.11766 -9.84606 -9.61662 -9.41651 -9.01201 -8.73034 -8.53084 -8.08806 -7.12443 -5.99765 -3.31416 0.76201 0.98082 2.37950 2.74484 2.89315 3.19111 3.29352 3.44895 3.47300 3.80716 4.31411 4.36602 4.48675 4.49921 4.69213 4.74510 4.81996 4.96955 4.99483 5.10583 5.13773 5.25025 5.28047 5.37667 5.43577 5.61142 5.62574 5.65551 5.77439 5.82455 6.00083 6.07619 6.13747 6.18880 6.30453 6.36742 6.38963 6.44639 6.51180 6.54657 6.67823 6.76623 7.11572 7.55905 7.61087 7.86545 8.25657 8.27518 8.76700 9.62590 10.09168 11.16007 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.019878 B = 0.002433 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.231890 B =11507.905123 C =12336.740872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.022 3.978 3 Si 0.884 3.116 4 H -0.286 1.286 5 H -0.302 1.302 6 H -0.276 1.276 7 C -0.244 4.244 8 H 0.094 0.906 9 N -0.605 5.605 10 C 0.140 3.860 11 C -0.107 4.107 12 H 0.090 0.910 13 C 0.134 3.866 14 N -0.722 5.722 15 C 0.562 3.438 16 O -0.545 6.545 17 C -0.163 4.163 18 C -0.065 4.065 19 C -0.135 4.135 20 C 0.115 3.885 21 N -0.594 5.594 22 H 0.417 0.583 23 C 0.044 3.956 24 C -0.192 4.192 25 C -0.124 4.124 26 C -0.001 4.001 27 C 0.097 3.903 28 H 0.073 0.927 29 O -0.565 6.565 30 C 0.084 3.916 31 H 0.264 0.736 32 H 0.041 0.959 33 H 0.034 0.966 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.401 0.599 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.172 0.828 40 H 0.150 0.850 41 H 0.138 0.862 42 H 0.378 0.622 43 H 0.061 0.939 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.461 -15.832 4.973 26.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.176 4.176 3 Si 0.715 3.285 4 H -0.213 1.213 5 H -0.230 1.230 6 H -0.202 1.202 7 C -0.371 4.371 8 H 0.112 0.888 9 N -0.333 5.333 10 C 0.014 3.986 11 C -0.126 4.126 12 H 0.108 0.892 13 C 0.011 3.989 14 N -0.373 5.373 15 C 0.350 3.650 16 O -0.424 6.424 17 C -0.167 4.167 18 C -0.085 4.085 19 C -0.156 4.156 20 C 0.006 3.994 21 N -0.196 5.196 22 H 0.253 0.747 23 C -0.082 4.082 24 C -0.217 4.217 25 C -0.129 4.129 26 C -0.020 4.020 27 C 0.037 3.963 28 H 0.091 0.909 29 O -0.369 6.369 30 C -0.042 4.042 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.236 0.764 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.189 0.811 40 H 0.167 0.833 41 H 0.155 0.845 42 H 0.225 0.775 43 H 0.079 0.921 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 20.668 -16.329 4.756 26.766 hybrid contribution -0.054 1.481 0.712 1.645 sum 20.614 -14.847 5.468 25.986 Atomic orbital electron populations 1.69840 1.05529 1.26673 1.52903 1.25010 0.95178 0.97438 1.00021 0.86970 0.79165 0.84671 0.77737 1.21337 1.22961 1.20219 1.18641 0.84148 0.95569 1.38767 0.88829 1.44595 1.09908 1.22147 1.56637 1.21459 0.87041 0.93062 0.97008 1.22445 0.98151 0.94413 0.97586 0.89164 1.21384 0.99166 0.89052 0.89317 1.45904 1.60646 1.20113 1.10661 1.18128 0.77432 0.80983 0.88436 1.90763 1.56641 1.74363 1.20593 1.19626 1.06842 0.97159 0.93078 1.20682 0.97609 0.98986 0.91182 1.19668 1.03389 0.92666 0.99891 1.18441 0.99147 0.91166 0.90611 1.41803 1.52278 1.16781 1.08761 0.74662 1.21842 1.01580 0.93962 0.90793 1.21774 1.07245 0.96398 0.96308 1.19158 1.05061 0.96670 0.91966 1.20679 0.91753 0.90664 0.98914 1.22963 0.87282 0.90298 0.95801 0.90913 1.86432 1.39195 1.50985 1.60311 1.22617 0.94100 0.93296 0.94191 0.92626 0.94132 0.94752 0.90950 0.90953 0.76389 0.85140 0.85605 0.81102 0.83272 0.84466 0.77505 0.92051 0.94671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.66 13.97 55.49 0.78 -26.88 16 2 C 0.02 0.64 5.43 -17.43 -0.09 0.55 16 3 Si 0.88 22.37 24.27 -169.99 -4.13 18.25 16 4 H -0.29 -6.91 6.49 56.52 0.37 -6.54 16 5 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 6 H -0.28 -6.95 6.66 56.52 0.38 -6.58 16 7 C -0.24 -6.82 10.57 -15.06 -0.16 -6.98 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 9 N -0.60 -14.28 3.21 -170.07 -0.55 -14.83 16 10 C 0.14 2.62 6.52 -3.06 -0.02 2.60 16 11 C -0.11 -1.69 2.75 -88.79 -0.24 -1.93 16 12 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 13 C 0.13 1.94 4.99 -4.04 -0.02 1.92 16 14 N -0.72 -9.42 5.35 -61.31 -0.33 -9.75 16 15 C 0.56 8.13 7.76 -12.42 -0.10 8.03 16 16 O -0.54 -9.67 16.33 5.30 0.09 -9.58 16 17 C -0.16 -2.00 5.87 -104.97 -0.62 -2.61 16 18 C -0.06 -0.65 9.46 -39.53 -0.37 -1.02 16 19 C -0.14 -1.21 10.00 -39.85 -0.40 -1.61 16 20 C 0.12 1.09 7.27 -83.96 -0.61 0.48 16 21 N -0.59 -3.84 6.05 -10.61 -0.06 -3.90 16 22 H 0.42 1.41 8.96 -40.82 -0.37 1.04 16 23 C 0.04 0.26 11.81 -16.73 -0.20 0.06 16 24 C -0.19 -1.58 11.09 -37.65 -0.42 -2.00 16 25 C -0.12 -1.33 6.36 -105.16 -0.67 -1.99 16 26 C 0.00 -0.01 9.64 -38.86 -0.37 -0.38 16 27 C 0.10 1.63 3.88 -24.58 -0.10 1.53 16 28 H 0.07 1.16 8.05 -51.93 -0.42 0.74 16 29 O -0.56 -8.55 13.47 -35.23 -0.47 -9.02 16 30 C 0.08 1.78 4.43 -2.52 -0.01 1.77 16 31 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 32 H 0.04 0.76 7.76 -51.93 -0.40 0.36 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 36 H 0.40 4.37 6.33 -40.82 -0.26 4.11 16 37 H 0.13 1.05 6.36 -52.49 -0.33 0.72 16 38 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 39 H 0.17 0.40 8.06 -52.49 -0.42 -0.03 16 40 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.14 1.64 7.64 -52.48 -0.40 1.24 16 42 H 0.38 4.18 9.12 45.56 0.42 4.59 16 43 H 0.06 1.37 6.64 -51.93 -0.34 1.03 16 44 H 0.04 0.80 5.57 -51.93 -0.29 0.51 16 LS Contribution 360.22 15.07 5.43 5.43 Total: -1.00 -36.32 360.22 -8.62 -44.94 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -4.97 Total: 6.93 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -4.40 Total: -1.59 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.16 Total: -55.36 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.39 Total: -18.60 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.13 Total: 18.25 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.32 -8.62 -44.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958366806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.014 kcal (2) G-P(sol) polarization free energy of solvation -36.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds