Wall clock time and date at job start Sat Apr 11 2020 02:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99835 * 2 1 4 4 H 1.48498 * 109.47274 * 264.53508 * 3 2 1 5 5 H 1.48503 * 109.46991 * 24.53527 * 3 2 1 6 6 H 1.48506 * 109.47121 * 144.53143 * 3 2 1 7 7 C 1.38812 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00154 * 337.62510 * 7 2 1 9 9 N 1.36938 * 120.00058 * 157.61786 * 7 2 1 10 10 C 1.47020 * 125.64830 * 161.51584 * 9 7 2 11 11 C 1.54327 * 107.27225 * 178.90782 * 10 9 7 12 12 H 1.09002 * 110.72013 * 96.34590 * 11 10 9 13 13 C 1.52991 * 110.72484 * 219.44608 * 11 10 9 14 14 N 1.46506 * 109.47074 * 293.54878 * 13 11 10 15 15 C 1.34770 * 119.99959 * 180.02562 * 14 13 11 16 16 O 1.21580 * 120.00615 * 359.97438 * 15 14 13 17 17 C 1.47656 * 119.99803 * 179.97438 * 15 14 13 18 18 C 1.40207 * 119.97561 * 359.97438 * 17 15 14 19 19 C 1.36320 * 120.66645 * 179.74562 * 18 17 15 20 20 C 1.39366 * 120.23858 * 0.25043 * 19 18 17 21 21 N 1.37401 * 133.24017 * 180.02562 * 20 19 18 22 22 H 0.96992 * 125.01350 * 359.93846 * 21 20 19 23 23 C 1.36865 * 109.97495 * 179.97438 * 21 20 19 24 24 C 1.34190 * 109.95857 * 0.02562 * 23 21 20 25 25 C 1.40863 * 119.64363 * 0.02562 * 20 19 18 26 26 C 1.39155 * 119.97379 * 180.25390 * 17 15 14 27 27 C 1.55156 * 102.94114 * 337.80920 * 11 10 9 28 28 H 1.08997 * 111.00741 * 277.42671 * 27 11 10 29 29 O 1.42905 * 111.00308 * 153.57125 * 27 11 10 30 30 C 1.47424 * 125.64570 * 341.48182 * 9 7 2 31 31 H 0.96997 * 120.00479 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.88230 * 59.49389 * 10 9 7 33 33 H 1.09001 * 109.88590 * 298.32766 * 10 9 7 34 34 H 1.09001 * 109.47779 * 173.54810 * 13 11 10 35 35 H 1.09004 * 109.47115 * 53.54534 * 13 11 10 36 36 H 0.97000 * 119.99775 * 359.97438 * 14 13 11 37 37 H 1.07995 * 119.66137 * 0.02562 * 18 17 15 38 38 H 1.08002 * 119.87753 * 180.27386 * 19 18 17 39 39 H 1.07998 * 125.01796 * 179.97438 * 23 21 20 40 40 H 1.08006 * 126.53874 * 180.02562 * 24 23 21 41 41 H 1.08003 * 120.30136 * 359.97438 * 26 17 15 42 42 H 0.96705 * 113.99761 * 179.97438 * 29 27 11 43 43 H 1.08992 * 110.37076 * 322.99715 * 30 9 7 44 44 H 1.09003 * 110.37074 * 85.21308 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6131 1.9798 -1.3937 5 1 1.3946 2.6832 0.5814 6 1 3.4852 1.4763 0.8124 7 6 2.0103 -1.2021 0.0005 8 1 1.5313 -2.1021 0.3570 9 7 3.3023 -1.2470 -0.4510 10 6 4.2726 -2.3144 -0.1671 11 6 5.5798 -1.9530 -0.9035 12 1 6.2743 -1.4489 -0.2315 13 6 6.2243 -3.2024 -1.5071 14 7 6.6708 -4.0902 -0.4306 15 6 7.2724 -5.2591 -0.7270 16 8 7.4442 -5.5773 -1.8878 17 6 7.7229 -6.1536 0.3580 18 6 7.5251 -5.7860 1.6965 19 6 7.9308 -6.6033 2.7092 20 6 8.5543 -7.8168 2.4248 21 7 9.0588 -8.8232 3.2125 22 1 9.0503 -8.8282 4.1824 23 6 9.5758 -9.8174 2.4267 24 6 9.4298 -9.4999 1.1311 25 6 8.7641 -8.1950 1.0842 26 6 8.3488 -7.3580 0.0513 27 6 5.0950 -0.9914 -2.0204 28 1 4.7175 -1.5477 -2.8784 29 8 6.1366 -0.0947 -2.4120 30 6 3.9503 -0.2332 -1.3029 31 1 -0.4851 0.8400 -0.0004 32 1 3.8924 -3.2680 -0.5333 33 1 4.4557 -2.3733 0.9058 34 1 7.0800 -2.9116 -2.1166 35 1 5.4957 -3.7230 -2.1286 36 1 6.5341 -3.8362 0.4955 37 1 7.0424 -4.8479 1.9273 38 1 7.7680 -6.3095 3.7357 39 1 10.0344 -10.7232 2.7950 40 1 9.7426 -10.0931 0.2845 41 1 8.5069 -7.6433 -0.9783 42 1 5.8805 0.5255 -3.1083 43 1 3.2411 0.1601 -2.0310 44 1 4.3529 0.5747 -0.6919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958366806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:18:15 Heat of formation + Delta-G solvation = -22.733918 kcal Electronic energy + Delta-G solvation = -27023.183346 eV Core-core repulsion = 23133.511325 eV Total energy + Delta-G solvation = -3889.672021 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.23117 -40.94033 -39.95709 -37.53863 -36.78312 -36.17361 -34.21872 -32.97584 -32.22504 -30.62539 -29.76447 -29.41739 -27.55732 -25.39847 -23.94097 -23.35090 -22.84361 -21.77907 -21.43239 -21.04373 -19.18912 -18.96101 -18.68127 -18.21886 -17.41367 -17.02366 -16.77099 -16.54467 -16.00648 -15.64545 -15.42022 -15.23080 -15.11873 -14.96319 -14.79225 -14.60859 -14.31177 -14.03650 -13.84844 -13.71202 -13.60061 -13.38488 -13.26267 -12.93057 -12.54939 -12.42676 -12.31311 -12.12815 -11.89254 -11.66395 -11.58772 -11.08756 -10.97309 -10.80416 -10.73553 -10.16109 -9.25124 -9.10259 -8.73653 -8.20019 -5.47927 -0.06539 0.26659 1.28416 1.38787 1.47275 1.79999 1.91759 2.11147 2.23702 2.39074 2.87040 2.95567 3.13508 3.41197 3.56199 3.69089 3.70624 3.81155 3.94941 3.98376 4.17920 4.24171 4.28522 4.29846 4.43189 4.45119 4.66741 4.70853 4.74331 4.76492 4.85147 4.95198 4.96440 4.97761 5.08044 5.22564 5.34171 5.36999 5.41618 5.63005 5.63792 5.73742 6.07940 6.08587 6.52404 6.69099 6.70201 6.82473 7.19512 7.49775 8.04537 8.99456 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.019878 B = 0.002433 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.231890 B =11507.905123 C =12336.740872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.036 4.036 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.308 1.308 6 H -0.271 1.271 7 C -0.236 4.236 8 H 0.063 0.937 9 N -0.624 5.624 10 C 0.137 3.863 11 C -0.090 4.090 12 H 0.102 0.898 13 C 0.145 3.855 14 N -0.713 5.713 15 C 0.561 3.439 16 O -0.586 6.586 17 C -0.180 4.180 18 C -0.074 4.074 19 C -0.129 4.129 20 C 0.104 3.896 21 N -0.581 5.581 22 H 0.434 0.566 23 C 0.068 3.932 24 C -0.226 4.226 25 C -0.146 4.146 26 C -0.020 4.020 27 C 0.112 3.888 28 H 0.083 0.917 29 O -0.564 6.564 30 C 0.078 3.922 31 H 0.263 0.737 32 H 0.038 0.962 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.412 0.588 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.215 0.785 40 H 0.159 0.841 41 H 0.123 0.877 42 H 0.398 0.602 43 H 0.047 0.953 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.151 -16.306 6.537 29.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.230 4.230 3 Si 0.776 3.224 4 H -0.194 1.194 5 H -0.237 1.237 6 H -0.197 1.197 7 C -0.364 4.364 8 H 0.081 0.919 9 N -0.352 5.352 10 C 0.013 3.987 11 C -0.109 4.109 12 H 0.121 0.879 13 C 0.021 3.979 14 N -0.364 5.364 15 C 0.351 3.649 16 O -0.468 6.468 17 C -0.184 4.184 18 C -0.093 4.093 19 C -0.149 4.149 20 C -0.006 4.006 21 N -0.185 5.185 22 H 0.274 0.726 23 C -0.058 4.058 24 C -0.250 4.250 25 C -0.151 4.151 26 C -0.039 4.039 27 C 0.051 3.949 28 H 0.101 0.899 29 O -0.371 6.371 30 C -0.048 4.048 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.250 0.750 37 H 0.166 0.834 38 H 0.173 0.827 39 H 0.232 0.768 40 H 0.176 0.824 41 H 0.141 0.859 42 H 0.248 0.752 43 H 0.065 0.935 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 23.403 -16.797 6.344 29.498 hybrid contribution -0.839 1.451 0.278 1.699 sum 22.564 -15.346 6.623 28.081 Atomic orbital electron populations 1.69965 1.07179 1.27344 1.55551 1.25638 0.95796 1.00740 1.00866 0.85947 0.77653 0.80243 0.78584 1.19395 1.23687 1.19671 1.18579 0.86046 0.94477 1.37331 0.91929 1.44670 1.09471 1.23791 1.57234 1.21604 0.87422 0.91539 0.98181 1.22289 0.96646 0.94782 0.97175 0.87950 1.21180 0.98808 0.88483 0.89445 1.45788 1.60047 1.19567 1.11040 1.18506 0.76796 0.81216 0.88431 1.90731 1.58458 1.75299 1.22342 1.19542 1.08261 0.97122 0.93475 1.20855 0.98125 1.00061 0.90296 1.19985 1.01937 0.92041 1.00977 1.18632 0.99324 0.91981 0.90635 1.41897 1.51047 1.15890 1.09681 0.72625 1.22503 0.99078 0.94355 0.89898 1.22063 1.08770 0.96091 0.98054 1.19470 1.05528 0.97726 0.92387 1.20683 0.92960 0.91437 0.98861 1.22716 0.86215 0.90015 0.95967 0.89877 1.86410 1.38170 1.51260 1.61247 1.22715 0.95137 0.93185 0.93749 0.92785 0.94379 0.93570 0.90739 0.91971 0.75000 0.83379 0.82703 0.76843 0.82359 0.85937 0.75231 0.93489 0.95188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.78 13.97 21.65 0.30 -59.48 16 2 C -0.04 -2.08 5.43 84.86 0.46 -1.62 16 3 Si 0.95 46.37 24.27 68.60 1.66 48.04 16 4 H -0.27 -12.19 6.49 99.48 0.65 -11.55 16 5 H -0.31 -15.31 7.11 99.48 0.71 -14.60 16 6 H -0.27 -12.91 6.66 99.48 0.66 -12.25 16 7 C -0.24 -13.39 10.57 84.03 0.89 -12.50 16 8 H 0.06 3.84 8.06 -2.91 -0.02 3.82 16 9 N -0.62 -29.08 3.21 -691.99 -2.22 -31.30 16 10 C 0.14 4.96 6.52 86.73 0.57 5.53 16 11 C -0.09 -2.64 2.75 -9.61 -0.03 -2.66 16 12 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 13 C 0.14 3.97 4.99 86.38 0.43 4.41 16 14 N -0.71 -17.91 5.35 -466.15 -2.49 -20.41 16 15 C 0.56 16.39 7.76 86.73 0.67 17.07 16 16 O -0.59 -21.50 16.33 -3.97 -0.06 -21.57 16 17 C -0.18 -4.46 5.87 -20.09 -0.12 -4.57 16 18 C -0.07 -1.37 9.46 22.30 0.21 -1.16 16 19 C -0.13 -2.02 10.00 22.09 0.22 -1.80 16 20 C 0.10 1.77 7.27 39.18 0.28 2.05 16 21 N -0.58 -5.64 6.05 -187.49 -1.13 -6.78 16 22 H 0.43 1.24 8.96 -92.71 -0.83 0.41 16 23 C 0.07 0.59 11.81 82.98 0.98 1.57 16 24 C -0.23 -3.41 11.09 23.52 0.26 -3.15 16 25 C -0.15 -3.07 6.36 -20.21 -0.13 -3.20 16 26 C -0.02 -0.49 9.64 22.74 0.22 -0.28 16 27 C 0.11 3.49 3.88 31.99 0.12 3.61 16 28 H 0.08 2.46 8.05 -2.39 -0.02 2.45 16 29 O -0.56 -15.20 13.47 -148.98 -2.01 -17.21 16 30 C 0.08 3.16 4.43 86.86 0.38 3.55 16 31 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 32 H 0.04 1.41 7.76 -2.39 -0.02 1.39 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.06 1.86 8.06 -2.38 -0.02 1.84 16 36 H 0.41 8.30 6.33 -92.71 -0.59 7.71 16 37 H 0.15 2.08 6.36 -2.91 -0.02 2.07 16 38 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.22 -0.06 8.06 -2.91 -0.02 -0.08 16 40 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 41 H 0.12 3.25 7.64 -2.91 -0.02 3.23 16 42 H 0.40 7.41 9.12 -74.05 -0.68 6.74 16 43 H 0.05 2.04 6.64 -2.39 -0.02 2.02 16 44 H 0.03 1.28 5.57 -2.39 -0.01 1.27 16 Total: -1.00 -81.11 360.22 -1.65 -82.76 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -1.13 Total: 19.11 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 5.43 Total: 6.84 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -5.54 Total: -117.96 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -2.07 Total: -38.77 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.66 Total: 48.04 kcal Total: -81.11 -1.65 -82.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958366806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.021 kcal (2) G-P(sol) polarization free energy of solvation -81.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds