Wall clock time and date at job start Sat Apr 11 2020 02:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00101 * 2 1 4 4 H 1.48500 * 109.46976 * 240.00298 * 3 2 1 5 5 H 1.48501 * 109.47367 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46967 * 120.00430 * 3 2 1 7 7 C 1.38810 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00564 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.47021 * 125.64543 * 0.03462 * 9 7 2 11 11 C 1.54372 * 107.28890 * 181.06030 * 10 9 7 12 12 H 1.08997 * 110.70549 * 263.79895 * 11 10 9 13 13 O 1.42897 * 110.75592 * 140.50876 * 11 10 9 14 14 C 1.55154 * 102.91802 * 22.14060 * 11 10 9 15 15 H 1.09003 * 111.00531 * 82.64128 * 14 11 10 16 16 C 1.52995 * 111.00478 * 206.45127 * 14 11 10 17 17 N 1.46507 * 109.47406 * 181.82292 * 16 14 11 18 18 C 1.34777 * 119.99896 * 180.02562 * 17 16 14 19 19 O 1.21573 * 120.00036 * 359.97438 * 18 17 16 20 20 C 1.47652 * 119.99555 * 179.97438 * 18 17 16 21 21 C 1.40203 * 119.97773 * 359.97329 * 20 18 17 22 22 C 1.36312 * 120.67248 * 180.02562 * 21 20 18 23 23 C 1.39370 * 120.23617 * 359.97438 * 22 21 20 24 24 N 1.37399 * 133.24831 * 180.35616 * 23 22 21 25 25 H 0.97000 * 125.00689 * 359.95994 * 24 23 22 26 26 C 1.36857 * 109.98303 * 180.13086 * 24 23 22 27 27 C 1.34197 * 109.95649 * 359.55735 * 26 24 23 28 28 C 1.40871 * 119.64097 * 0.03081 * 23 22 21 29 29 C 1.39154 * 119.97126 * 180.02562 * 20 18 17 30 30 C 1.47417 * 125.64994 * 180.02562 * 9 7 2 31 31 H 0.97005 * 119.99479 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.88257 * 300.44830 * 10 9 7 33 33 H 1.09000 * 109.88178 * 61.45498 * 10 9 7 34 34 H 0.96701 * 114.00000 * 66.48062 * 13 11 10 35 35 H 1.09005 * 109.47090 * 61.82002 * 16 14 11 36 36 H 1.09002 * 109.47473 * 301.81983 * 16 14 11 37 37 H 0.96997 * 119.99451 * 359.97438 * 17 16 14 38 38 H 1.08004 * 119.66422 * 359.97438 * 21 20 18 39 39 H 1.08007 * 119.88140 * 180.02562 * 22 21 20 40 40 H 1.08002 * 125.02490 * 179.82679 * 26 24 23 41 41 H 1.08005 * 126.54170 * 180.28484 * 27 26 24 42 42 H 1.07997 * 120.30527 * 0.02562 * 29 20 18 43 43 H 1.09003 * 110.37067 * 37.06277 * 30 9 7 44 44 H 1.09000 * 110.36719 * 274.73839 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1375 -2.5328 -0.0030 11 6 -0.4491 -4.0445 0.0235 12 1 -0.6320 -4.4179 -0.9841 13 8 -1.5636 -4.3170 0.8753 14 6 0.8512 -4.6565 0.6081 15 1 0.8557 -4.5978 1.6965 16 6 1.0367 -6.1009 0.1390 17 7 2.2486 -6.6591 0.7440 18 6 2.6150 -7.9273 0.4718 19 8 1.9395 -8.6081 -0.2753 20 6 3.8367 -8.4896 1.0812 21 6 4.6155 -7.7038 1.9423 22 6 5.7463 -8.2084 2.5122 23 6 6.1430 -9.5174 2.2447 24 7 7.2025 -10.2846 2.6651 25 1 7.8978 -9.9879 3.2729 26 6 7.1344 -11.5277 2.0968 27 6 6.0485 -11.6142 1.3131 28 6 5.3691 -10.3172 1.3810 29 6 4.2147 -9.7988 0.7994 30 6 1.9334 -3.7311 -0.0017 31 1 -0.4850 0.8401 0.0004 32 1 -0.5583 -2.0526 0.8805 33 1 -0.5538 -2.0815 -0.9036 34 1 -2.4013 -3.9556 0.5546 35 1 1.1301 -6.1211 -0.9468 36 1 0.1736 -6.6945 0.4405 37 1 2.7877 -6.1157 1.3398 38 1 4.3170 -6.6880 2.1557 39 1 6.3366 -7.5919 3.1740 40 1 7.8467 -12.3232 2.2589 41 1 5.7348 -12.4753 0.7416 42 1 3.6185 -10.4074 0.1357 43 1 2.8322 -3.7409 0.6148 44 1 2.1675 -4.0415 -1.0200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958366807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:18:18 Heat of formation + Delta-G solvation = -24.149375 kcal Electronic energy + Delta-G solvation = -26931.455179 eV Core-core repulsion = 23041.721779 eV Total energy + Delta-G solvation = -3889.733399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.22501 -40.87851 -39.76329 -37.53018 -36.64237 -36.11173 -34.03255 -32.96463 -31.77807 -30.49857 -29.74348 -29.19326 -27.25518 -25.56295 -24.00683 -23.33556 -22.25702 -21.75225 -21.56366 -20.95907 -19.17236 -18.90667 -18.47879 -18.03394 -17.30151 -16.89457 -16.75825 -16.39749 -15.87699 -15.71842 -15.38995 -15.17486 -14.94253 -14.74853 -14.67702 -14.39353 -14.03206 -14.00319 -13.69698 -13.65867 -13.38513 -13.18107 -13.09335 -12.67852 -12.56224 -12.40356 -12.32387 -11.92599 -11.87515 -11.78512 -11.49960 -11.05271 -10.79864 -10.79300 -10.71317 -10.14524 -9.24571 -8.92986 -8.73024 -7.85402 -5.22027 -0.05923 0.27178 1.47025 1.50223 1.56335 1.80629 1.92595 2.13133 2.24255 2.48957 2.96144 3.24276 3.35164 3.58313 3.64741 3.72657 3.84604 3.90295 3.95579 4.15735 4.18979 4.30175 4.41344 4.43159 4.46828 4.61380 4.70478 4.71842 4.78990 4.89630 4.96408 4.97064 5.08710 5.27387 5.35057 5.38134 5.41673 5.44287 5.49486 5.64097 5.71856 5.74283 6.09163 6.17134 6.53959 6.69717 6.89499 7.07681 7.20398 7.74642 8.38281 9.24602 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.016800 B = 0.002421 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.225870 B =11563.175771 C =12909.846999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.980 3.020 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.243 4.243 8 H 0.088 0.912 9 N -0.625 5.625 10 C 0.161 3.839 11 C 0.096 3.904 12 H 0.075 0.925 13 O -0.569 6.569 14 C -0.089 4.089 15 H 0.088 0.912 16 C 0.147 3.853 17 N -0.712 5.712 18 C 0.560 3.440 19 O -0.587 6.587 20 C -0.179 4.179 21 C -0.074 4.074 22 C -0.129 4.129 23 C 0.105 3.895 24 N -0.581 5.581 25 H 0.434 0.566 26 C 0.068 3.932 27 C -0.226 4.226 28 C -0.146 4.146 29 C -0.019 4.019 30 C 0.139 3.861 31 H 0.247 0.753 32 H 0.020 0.980 33 H 0.013 0.987 34 H 0.393 0.607 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.412 0.588 38 H 0.147 0.853 39 H 0.155 0.845 40 H 0.215 0.785 41 H 0.159 0.841 42 H 0.123 0.877 43 H 0.059 0.941 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.655 -22.184 6.960 27.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.371 4.371 8 H 0.106 0.894 9 N -0.352 5.352 10 C 0.036 3.964 11 C 0.036 3.964 12 H 0.092 0.908 13 O -0.376 6.376 14 C -0.109 4.109 15 H 0.106 0.894 16 C 0.023 3.977 17 N -0.363 5.363 18 C 0.350 3.650 19 O -0.469 6.469 20 C -0.184 4.184 21 C -0.094 4.094 22 C -0.149 4.149 23 C -0.006 4.006 24 N -0.185 5.185 25 H 0.274 0.726 26 C -0.058 4.058 27 C -0.250 4.250 28 C -0.151 4.151 29 C -0.039 4.039 30 C 0.014 3.986 31 H 0.056 0.944 32 H 0.038 0.962 33 H 0.031 0.969 34 H 0.242 0.758 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.249 0.751 38 H 0.165 0.835 39 H 0.173 0.827 40 H 0.232 0.768 41 H 0.177 0.823 42 H 0.141 0.859 43 H 0.077 0.923 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 14.700 -22.721 6.874 27.921 hybrid contribution -0.127 1.948 -0.134 1.957 sum 14.573 -20.773 6.740 26.255 Atomic orbital electron populations 1.70163 1.06345 1.25385 1.58226 1.25687 0.96655 1.01174 1.02568 0.85126 0.77103 0.78643 0.78301 1.20283 1.22283 1.20078 1.19462 0.91161 0.83434 1.43072 0.89436 1.44610 1.02075 1.01293 1.87225 1.21597 0.84717 0.91680 0.98447 1.22893 0.86252 0.94281 0.93006 0.90767 1.86391 1.19485 1.79893 1.51846 1.22403 0.94363 0.92866 1.01240 0.89373 1.21119 0.87133 0.91744 0.97722 1.45805 1.27505 1.13360 1.49658 1.18522 0.84892 0.81340 0.80225 1.90725 1.56212 1.60768 1.39173 1.19536 0.97607 0.96131 1.05089 1.20848 0.93822 0.99827 0.94868 1.19977 0.98519 0.92604 1.03796 1.18626 0.90431 0.93661 0.97836 1.41893 1.23188 1.11324 1.42086 0.72620 1.22505 0.99701 0.87883 0.95728 1.22064 0.98305 0.96959 1.07630 1.19471 0.96968 0.96530 1.02126 1.20676 0.93947 0.93490 0.95772 1.21780 0.95172 0.83797 0.97816 0.94402 0.96184 0.96904 0.75751 0.91642 0.91324 0.75077 0.83509 0.82700 0.76817 0.82344 0.85914 0.92289 0.95344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.90 10.31 21.65 0.22 -56.67 16 2 C -0.07 -3.83 5.49 84.86 0.47 -3.37 16 3 Si 0.98 45.19 29.55 68.60 2.03 47.22 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 7 C -0.24 -13.33 10.28 84.03 0.86 -12.47 16 8 H 0.09 4.52 7.83 -2.91 -0.02 4.50 16 9 N -0.62 -31.49 3.39 -691.94 -2.35 -33.84 16 10 C 0.16 7.88 5.16 86.75 0.45 8.33 16 11 C 0.10 3.56 3.80 31.80 0.12 3.69 16 12 H 0.07 2.53 8.04 -2.39 -0.02 2.52 16 13 O -0.57 -19.48 13.39 -148.98 -1.99 -21.47 16 14 C -0.09 -3.01 2.79 -9.41 -0.03 -3.03 16 15 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 16 C 0.15 4.42 5.12 86.38 0.44 4.86 16 17 N -0.71 -19.15 5.40 -466.14 -2.52 -21.66 16 18 C 0.56 16.97 7.76 86.73 0.67 17.65 16 19 O -0.59 -22.06 16.33 -3.94 -0.06 -22.12 16 20 C -0.18 -4.56 5.87 -20.09 -0.12 -4.68 16 21 C -0.07 -1.43 9.46 22.30 0.21 -1.22 16 22 C -0.13 -2.06 10.00 22.09 0.22 -1.84 16 23 C 0.10 1.79 7.27 39.19 0.28 2.08 16 24 N -0.58 -5.69 6.05 -187.48 -1.13 -6.82 16 25 H 0.43 1.27 8.96 -92.71 -0.83 0.44 16 26 C 0.07 0.60 11.81 82.99 0.98 1.58 16 27 C -0.23 -3.43 11.09 23.52 0.26 -3.17 16 28 C -0.15 -3.10 6.36 -20.21 -0.13 -3.23 16 29 C -0.02 -0.49 9.64 22.74 0.22 -0.27 16 30 C 0.14 5.39 6.56 86.85 0.57 5.96 16 31 H 0.25 14.41 8.31 -92.70 -0.77 13.64 16 32 H 0.02 1.11 7.29 -2.39 -0.02 1.10 16 33 H 0.01 0.70 7.50 -2.39 -0.02 0.68 16 34 H 0.39 10.43 9.12 -74.06 -0.68 9.75 16 35 H 0.07 2.05 8.04 -2.38 -0.02 2.03 16 36 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.41 9.10 6.43 -92.71 -0.60 8.51 16 38 H 0.15 2.22 6.36 -2.91 -0.02 2.21 16 39 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 40 H 0.22 -0.06 8.06 -2.91 -0.02 -0.09 16 41 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 42 H 0.12 3.30 7.64 -2.91 -0.02 3.27 16 43 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.03 1.10 7.96 -2.39 -0.02 1.08 16 Total: -1.00 -79.09 366.29 -1.36 -80.45 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -1.04 Total: 24.07 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 5.49 Total: 10.85 kcal Atomic # 7 Polarization: -113.22 SS G_CDS: -5.78 Total: -119.00 kcal Atomic # 8 Polarization: -41.54 SS G_CDS: -2.06 Total: -43.60 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -79.09 -1.36 -80.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958366807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.305 kcal (2) G-P(sol) polarization free energy of solvation -79.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds