Wall clock time and date at job start Sat Apr 11 2020 02:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 119.99850 * 2 1 4 4 H 1.48495 * 109.46854 * 269.99937 * 3 2 1 5 5 H 1.48502 * 109.46687 * 29.99998 * 3 2 1 6 6 H 1.48501 * 109.46881 * 149.99999 * 3 2 1 7 7 C 1.38818 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99618 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00119 * 0.02562 * 7 2 1 10 10 C 1.47429 * 125.64564 * 359.95998 * 9 7 2 11 11 C 1.54910 * 104.82927 * 204.16490 * 10 9 7 12 12 H 1.09004 * 111.00300 * 204.91403 * 11 10 9 13 13 O 1.42903 * 111.00481 * 81.06262 * 11 10 9 14 14 C 1.55153 * 101.58159 * 322.98910 * 11 10 9 15 15 H 1.08999 * 110.87195 * 277.06916 * 14 11 10 16 16 C 1.53000 * 110.72149 * 153.86752 * 14 11 10 17 17 N 1.46504 * 109.47255 * 180.02562 * 16 14 11 18 18 C 1.34773 * 120.00016 * 179.97438 * 17 16 14 19 19 O 1.21595 * 120.00064 * 359.97438 * 18 17 16 20 20 C 1.47503 * 120.00101 * 180.02562 * 18 17 16 21 21 C 1.39352 * 120.20670 * 359.97438 * 20 18 17 22 22 C 1.38314 * 120.49626 * 180.28320 * 21 20 18 23 23 C 1.37911 * 120.59246 * 359.47428 * 22 21 20 24 24 C 1.39537 * 119.99078 * 0.52452 * 23 22 21 25 25 C 1.46573 * 133.96036 * 179.74354 * 24 23 22 26 26 C 1.34208 * 106.89533 * 179.97438 * 25 24 23 27 27 N 1.36907 * 109.88090 * 359.97438 * 26 25 24 28 28 H 0.97006 * 125.01374 * 179.97438 * 27 26 25 29 29 C 1.37123 * 109.97251 * 0.02562 * 27 26 25 30 30 C 1.47018 * 125.64956 * 179.97438 * 9 7 2 31 31 H 0.96998 * 120.00073 * 0.02562 * 1 2 3 32 32 H 1.09010 * 110.36462 * 322.99786 * 10 9 7 33 33 H 1.08992 * 110.36711 * 85.21509 * 10 9 7 34 34 H 0.96700 * 113.99831 * 67.80695 * 13 11 10 35 35 H 1.09000 * 109.47384 * 60.02427 * 16 14 11 36 36 H 1.09003 * 109.47033 * 300.02142 * 16 14 11 37 37 H 0.97000 * 119.99844 * 0.02562 * 17 16 14 38 38 H 1.08002 * 119.74788 * 359.97438 * 21 20 18 39 39 H 1.07998 * 119.70526 * 179.72519 * 22 21 20 40 40 H 1.08005 * 120.00946 * 180.25806 * 23 22 21 41 41 H 1.07998 * 126.55034 * 0.02562 * 25 24 23 42 42 H 1.07999 * 125.06175 * 180.02562 * 26 25 24 43 43 H 1.09002 * 109.88148 * 59.49017 * 30 9 7 44 44 H 1.09000 * 109.88103 * 298.32390 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 -0.1414 -2.5332 0.0008 11 6 -0.4014 -3.9320 0.6137 12 1 -1.3588 -4.3327 0.2807 13 8 -0.3360 -3.8862 2.0405 14 6 0.7786 -4.7524 0.0290 15 1 0.5480 -5.1010 -0.9776 16 6 1.1235 -5.9307 0.9420 17 7 2.2393 -6.6850 0.3654 18 6 2.7177 -7.7725 1.0016 19 8 2.2235 -8.1275 2.0544 20 6 3.8415 -8.5316 0.4214 21 6 4.4114 -8.1284 -0.7846 22 6 5.4615 -8.8391 -1.3371 23 6 5.9688 -9.9515 -0.6989 24 6 5.4152 -10.3753 0.5098 25 6 5.6981 -11.4846 1.4250 26 6 4.8269 -11.3841 2.4409 27 7 4.0114 -10.3012 2.2494 28 1 3.3022 -10.0251 2.8510 29 6 4.3441 -9.6651 1.0811 30 6 1.9320 -3.7274 0.0005 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5991 -1.7584 0.6161 33 1 -0.5275 -2.4856 -1.0173 34 1 -1.0532 -3.3841 2.4512 35 1 0.2552 -6.5826 1.0377 36 1 1.4075 -5.5570 1.9258 37 1 2.6342 -6.4012 -0.4739 38 1 4.0269 -7.2572 -1.2943 39 1 5.8907 -8.5178 -2.2746 40 1 6.7918 -10.4970 -1.1366 41 1 6.4623 -12.2383 1.3053 42 1 4.7770 -12.0568 3.2844 43 1 2.5589 -3.8506 0.8837 44 1 2.5279 -3.8646 -0.9018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958414021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:18:27 Heat of formation + Delta-G solvation = 3.639274 kcal Electronic energy + Delta-G solvation = -27443.348988 eV Core-core repulsion = 23554.820594 eV Total energy + Delta-G solvation = -3888.528393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.53122 -39.53978 -38.21478 -36.93583 -34.90881 -34.52607 -32.47621 -31.94670 -29.99692 -29.53772 -28.83687 -27.67421 -25.61054 -24.27242 -23.12450 -21.96233 -21.25223 -20.66517 -20.06882 -19.62912 -18.18107 -17.34796 -17.19625 -16.37423 -16.28918 -15.65117 -15.30096 -15.01898 -14.84604 -14.54095 -14.13823 -14.13143 -13.91594 -13.79780 -13.33654 -13.18082 -12.81311 -12.69148 -12.34561 -12.02631 -11.96542 -11.79287 -11.60195 -11.37744 -11.25932 -10.82556 -10.66354 -10.37584 -10.25280 -10.03946 -9.94872 -9.84890 -9.75311 -9.12166 -8.95236 -8.69337 -8.45439 -7.95230 -6.85827 -5.70245 -3.10218 0.53257 1.43364 2.33986 2.99405 3.04091 3.23269 3.38060 3.43347 3.45272 3.80690 4.44908 4.46843 4.58990 4.73044 4.74455 4.84116 5.03152 5.13881 5.18039 5.30060 5.31787 5.39406 5.50077 5.57657 5.60607 5.68243 5.71056 5.88884 6.03866 6.08272 6.10987 6.29479 6.33169 6.41707 6.44902 6.48569 6.51593 6.62941 6.84347 6.91271 7.26786 7.37714 7.56318 7.56514 7.74026 8.21194 8.23472 8.35961 9.17410 9.78803 10.42684 11.34715 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.019333 B = 0.002562 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.927403 B =10926.867271 C =11740.188467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.013 4.013 3 Si 0.916 3.084 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.218 4.218 8 H 0.077 0.923 9 N -0.597 5.597 10 C 0.126 3.874 11 C 0.082 3.918 12 H 0.055 0.945 13 O -0.557 6.557 14 C -0.107 4.107 15 H 0.086 0.914 16 C 0.140 3.860 17 N -0.719 5.719 18 C 0.561 3.439 19 O -0.557 6.557 20 C -0.148 4.148 21 C -0.058 4.058 22 C -0.158 4.158 23 C -0.044 4.044 24 C -0.124 4.124 25 C -0.206 4.206 26 C 0.049 3.951 27 N -0.579 5.579 28 H 0.427 0.573 29 C 0.150 3.850 30 C 0.144 3.856 31 H 0.252 0.748 32 H 0.112 0.888 33 H 0.019 0.981 34 H 0.375 0.625 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.400 0.600 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.148 0.852 42 H 0.172 0.828 43 H 0.028 0.972 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.840 -21.812 -0.511 22.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.208 4.208 3 Si 0.746 3.254 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.346 4.346 8 H 0.095 0.905 9 N -0.323 5.323 10 C 0.001 3.999 11 C 0.022 3.978 12 H 0.072 0.928 13 O -0.363 6.363 14 C -0.126 4.126 15 H 0.104 0.896 16 C 0.017 3.983 17 N -0.369 5.369 18 C 0.349 3.651 19 O -0.438 6.438 20 C -0.154 4.154 21 C -0.078 4.078 22 C -0.177 4.177 23 C -0.062 4.062 24 C -0.128 4.128 25 C -0.231 4.231 26 C -0.077 4.077 27 N -0.182 5.182 28 H 0.267 0.733 29 C 0.039 3.961 30 C 0.018 3.982 31 H 0.063 0.937 32 H 0.129 0.871 33 H 0.037 0.963 34 H 0.222 0.778 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.235 0.765 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.166 0.834 42 H 0.189 0.811 43 H 0.046 0.954 44 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 6.868 -22.148 0.259 23.190 hybrid contribution -0.177 1.505 -0.201 1.529 sum 6.691 -20.643 0.059 21.701 Atomic orbital electron populations 1.69742 1.04928 1.24789 1.58066 1.24766 0.95752 0.97733 1.02507 0.86049 0.78575 0.83224 0.77537 1.21645 1.21648 1.20674 1.19089 0.90532 0.82411 1.42607 0.90467 1.44339 1.01525 0.99751 1.86699 1.22590 0.85740 0.92967 0.98627 1.23191 0.95107 0.98128 0.81400 0.92767 1.86392 1.54328 1.76637 1.18929 1.22516 0.97479 0.94378 0.98262 0.89600 1.21262 0.87877 0.91345 0.97783 1.46007 1.36197 1.28319 1.26376 1.18144 0.82458 0.80376 0.84136 1.90674 1.60935 1.69129 1.23031 1.18973 1.00903 0.97466 0.98075 1.21101 0.95106 0.98534 0.93067 1.20813 0.98640 0.96949 1.01327 1.20705 0.97804 0.95259 0.92466 1.19231 0.98431 0.98043 0.97130 1.21678 1.04186 1.01302 0.95906 1.21950 0.93461 0.91528 1.00800 1.42017 1.31946 1.24059 1.20182 0.73276 1.17956 0.96119 0.94079 0.87958 1.21313 0.93370 0.85664 0.97836 0.93743 0.87056 0.96274 0.77816 0.91752 0.90011 0.76458 0.85161 0.85195 0.85576 0.83419 0.81120 0.95361 0.96305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.52 10.09 55.49 0.56 -25.96 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 3 Si 0.92 22.02 29.55 -169.99 -5.02 16.99 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.22 -6.06 10.27 -15.06 -0.15 -6.21 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -15.10 3.39 -170.07 -0.58 -15.67 16 10 C 0.13 2.94 5.62 -2.53 -0.01 2.93 16 11 C 0.08 1.51 4.17 -24.58 -0.10 1.41 16 12 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 13 O -0.56 -10.31 12.22 -35.23 -0.43 -10.75 16 14 C -0.11 -1.81 2.95 -88.79 -0.26 -2.07 16 15 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 16 C 0.14 2.24 4.59 -4.04 -0.02 2.22 16 17 N -0.72 -10.04 5.35 -61.36 -0.33 -10.37 16 18 C 0.56 8.47 7.76 -12.49 -0.10 8.37 16 19 O -0.56 -9.81 15.16 5.28 0.08 -9.73 16 20 C -0.15 -1.95 5.88 -104.87 -0.62 -2.57 16 21 C -0.06 -0.62 9.52 -39.14 -0.37 -0.99 16 22 C -0.16 -1.47 10.00 -39.67 -0.40 -1.86 16 23 C -0.04 -0.42 10.09 -39.22 -0.40 -0.81 16 24 C -0.12 -1.40 6.37 -105.15 -0.67 -2.07 16 25 C -0.21 -1.90 11.09 -37.64 -0.42 -2.32 16 26 C 0.05 0.43 11.82 -16.71 -0.20 0.23 16 27 N -0.58 -6.64 5.87 -10.45 -0.06 -6.70 16 28 H 0.43 4.91 7.54 -40.82 -0.31 4.60 16 29 C 0.15 1.95 6.87 -83.76 -0.58 1.38 16 30 C 0.14 2.96 6.52 -3.06 -0.02 2.94 16 31 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.11 2.91 5.87 -51.92 -0.30 2.61 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.37 5.66 9.12 45.56 0.42 6.08 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.53 7.44 -51.93 -0.39 1.15 16 37 H 0.40 4.71 6.35 -40.82 -0.26 4.45 16 38 H 0.13 1.12 6.37 -52.49 -0.33 0.79 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 41 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 42 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.03 0.62 7.77 -51.93 -0.40 0.21 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 361.51 15.07 5.45 5.45 Total: -1.00 -34.33 361.51 -9.67 -44.00 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -4.93 Total: 12.62 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -4.41 Total: 0.12 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.41 Total: -58.71 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.35 Total: -20.47 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.33 -9.67 -44.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958414021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.640 kcal (2) G-P(sol) polarization free energy of solvation -34.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds