Wall clock time and date at job start Sat Apr 11 2020 02:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99564 * 2 1 4 4 H 1.48502 * 109.46867 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47240 * 299.99616 * 3 2 1 6 6 H 1.48505 * 109.47038 * 60.00100 * 3 2 1 7 7 C 1.38810 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00114 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.47419 * 125.64533 * 0.05598 * 9 7 2 11 11 C 1.54912 * 104.83306 * 204.07767 * 10 9 7 12 12 H 1.08995 * 111.03828 * 204.90274 * 11 10 9 13 13 O 1.42903 * 110.99758 * 81.06681 * 11 10 9 14 14 C 1.55149 * 101.58182 * 322.99349 * 11 10 9 15 15 H 1.09002 * 110.72219 * 277.13706 * 14 11 10 16 16 C 1.53001 * 110.72077 * 153.85835 * 14 11 10 17 17 N 1.46504 * 109.47036 * 175.00109 * 16 14 11 18 18 C 1.34774 * 119.99981 * 180.02562 * 17 16 14 19 19 O 1.21646 * 120.00287 * 359.97438 * 18 17 16 20 20 C 1.47065 * 120.00113 * 179.97438 * 18 17 16 21 21 C 1.35865 * 125.42975 * 179.97438 * 20 18 17 22 22 C 1.41589 * 107.72561 * 180.02562 * 21 20 18 23 23 C 1.40103 * 133.37875 * 180.02562 * 22 21 20 24 24 C 1.36435 * 119.82829 * 179.97438 * 23 22 21 25 25 C 1.38944 * 120.61924 * 0.04091 * 24 23 22 26 26 C 1.37674 * 120.64525 * 359.96057 * 25 24 23 27 27 C 1.39228 * 119.81001 * 0.02562 * 26 25 24 28 28 N 1.37478 * 133.17853 * 180.35128 * 27 26 25 29 29 H 0.97002 * 125.60771 * 359.93207 * 28 27 26 30 30 C 1.47014 * 125.65028 * 179.97438 * 9 7 2 31 31 H 0.96996 * 119.99935 * 0.02562 * 1 2 3 32 32 H 1.09009 * 110.36844 * 85.24387 * 10 9 7 33 33 H 1.09002 * 110.37005 * 322.91886 * 10 9 7 34 34 H 0.96700 * 114.00311 * 67.80834 * 13 11 10 35 35 H 1.08996 * 109.47758 * 294.99881 * 16 14 11 36 36 H 1.08998 * 109.46845 * 55.00181 * 16 14 11 37 37 H 0.97000 * 120.00243 * 0.02562 * 17 16 14 38 38 H 1.08000 * 126.13812 * 359.97438 * 21 20 18 39 39 H 1.07999 * 120.08463 * 0.02562 * 23 22 21 40 40 H 1.08004 * 119.69358 * 180.02562 * 24 23 22 41 41 H 1.07996 * 119.67651 * 179.97438 * 25 24 23 42 42 H 1.08000 * 120.09163 * 180.02562 * 26 25 24 43 43 H 1.08999 * 109.88292 * 59.56690 * 30 9 7 44 44 H 1.09001 * 109.88362 * 298.40882 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 -0.1413 -2.5332 0.0011 11 6 -0.4016 -3.9321 0.6135 12 1 -1.3588 -4.3331 0.2804 13 8 -0.3371 -3.8865 2.0404 14 6 0.7786 -4.7524 0.0294 15 1 0.5465 -5.0985 -0.9778 16 6 1.1231 -5.9308 0.9425 17 7 2.1570 -6.7532 0.3093 18 6 2.6198 -7.8536 0.9349 19 8 2.1793 -8.1637 2.0256 20 6 3.6573 -8.6794 0.2991 21 6 4.2013 -9.8062 0.8286 22 6 5.1578 -10.2972 -0.0927 23 6 6.0157 -11.4048 -0.0906 24 6 6.8462 -11.6220 -1.1510 25 6 6.8509 -10.7536 -2.2357 26 6 6.0172 -9.6583 -2.2613 27 6 5.1604 -9.4154 -1.1911 28 7 4.2310 -8.4356 -0.9337 29 1 4.0151 -7.6938 -1.5203 30 6 1.9320 -3.7274 0.0017 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5267 -2.4874 -1.0175 33 1 -0.5994 -1.7586 0.6161 34 1 -1.0545 -3.3844 2.4507 35 1 1.4916 -5.5553 1.8970 36 1 0.2307 -6.5340 1.1094 37 1 2.5086 -6.5058 -0.5602 38 1 3.9498 -10.2478 1.7816 39 1 6.0190 -12.0854 0.7480 40 1 7.5063 -12.4768 -1.1473 41 1 7.5148 -10.9399 -3.0669 42 1 6.0280 -8.9893 -3.1091 43 1 2.5585 -3.8506 0.8851 44 1 2.5284 -3.8644 -0.9003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958654393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:18:32 Heat of formation + Delta-G solvation = -21.017982 kcal Electronic energy + Delta-G solvation = -27070.015237 eV Core-core repulsion = 23180.417625 eV Total energy + Delta-G solvation = -3889.597612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.59306 -40.73195 -39.74273 -37.69873 -36.36546 -36.22835 -34.04295 -33.14112 -31.71908 -30.44807 -30.00222 -29.34433 -27.35869 -25.79724 -24.19422 -23.14841 -22.38445 -22.01426 -21.46406 -20.90350 -19.49112 -19.12595 -18.20665 -18.02985 -17.03794 -16.87515 -16.65075 -16.60126 -15.95300 -15.75958 -15.56641 -15.34259 -15.04790 -14.81086 -14.67356 -14.44295 -14.42124 -13.99072 -13.84518 -13.69882 -13.20347 -13.08039 -12.69840 -12.60925 -12.55242 -12.34001 -12.07865 -11.90487 -11.85238 -11.82339 -11.74878 -11.28095 -10.91135 -10.83611 -10.68172 -10.29494 -9.24070 -8.87996 -8.77995 -7.81282 -5.23563 -0.25697 0.67849 1.06399 1.44451 1.45507 1.55205 1.80635 2.01122 2.22352 2.46608 2.96662 3.25248 3.32736 3.56696 3.61848 3.75209 3.86621 3.91741 3.97680 4.10897 4.21668 4.37022 4.39722 4.47872 4.56602 4.58295 4.61548 4.77571 4.81268 4.88792 4.93967 4.96619 5.14650 5.18117 5.30441 5.37948 5.47698 5.48963 5.55270 5.66710 5.70551 5.75779 6.12423 6.26864 6.30284 6.46995 6.93656 6.97493 7.09222 7.75721 8.38007 9.20949 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.002426 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.023400 B =11537.693919 C =12687.934198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.065 4.065 3 Si 0.977 3.023 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.076 0.924 9 N -0.621 5.621 10 C 0.126 3.874 11 C 0.093 3.907 12 H 0.091 0.909 13 O -0.570 6.570 14 C -0.091 4.091 15 H 0.117 0.883 16 C 0.156 3.844 17 N -0.711 5.711 18 C 0.582 3.418 19 O -0.563 6.563 20 C 0.006 3.994 21 C -0.118 4.118 22 C -0.145 4.145 23 C -0.073 4.073 24 C -0.150 4.150 25 C -0.085 4.085 26 C -0.142 4.142 27 C 0.102 3.898 28 N -0.569 5.569 29 H 0.429 0.571 30 C 0.141 3.859 31 H 0.247 0.753 32 H 0.003 0.997 33 H 0.079 0.921 34 H 0.389 0.611 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.409 0.591 38 H 0.154 0.846 39 H 0.138 0.862 40 H 0.149 0.851 41 H 0.155 0.845 42 H 0.143 0.857 43 H 0.012 0.988 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.797 -22.587 -5.946 24.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.806 3.194 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.219 1.219 7 C -0.365 4.365 8 H 0.094 0.906 9 N -0.346 5.346 10 C 0.001 3.999 11 C 0.033 3.967 12 H 0.109 0.891 13 O -0.377 6.377 14 C -0.110 4.110 15 H 0.135 0.865 16 C 0.032 3.968 17 N -0.362 5.362 18 C 0.370 3.630 19 O -0.442 6.442 20 C -0.104 4.104 21 C -0.145 4.145 22 C -0.149 4.149 23 C -0.092 4.092 24 C -0.169 4.169 25 C -0.105 4.105 26 C -0.163 4.163 27 C -0.009 4.009 28 N -0.174 5.174 29 H 0.269 0.731 30 C 0.016 3.984 31 H 0.057 0.943 32 H 0.021 0.979 33 H 0.097 0.903 34 H 0.238 0.762 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.245 0.755 38 H 0.172 0.828 39 H 0.156 0.844 40 H 0.167 0.833 41 H 0.173 0.827 42 H 0.161 0.839 43 H 0.030 0.970 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 8.886 -22.769 -5.324 25.015 hybrid contribution -0.305 2.229 -0.397 2.285 sum 8.580 -20.540 -5.720 22.983 Atomic orbital electron populations 1.69991 1.05980 1.24944 1.58789 1.25555 0.96695 1.00728 1.02792 0.85022 0.78020 0.79574 0.76783 1.19458 1.21700 1.21940 1.19436 0.90873 0.83900 1.42289 0.90620 1.44646 1.02636 1.00716 1.86643 1.22460 0.84682 0.95341 0.97433 1.23113 0.97287 0.95157 0.81192 0.89122 1.86379 1.55511 1.76821 1.19007 1.22463 0.95276 0.93362 0.99894 0.86539 1.20994 0.90419 0.89982 0.95391 1.45853 1.41442 1.25766 1.23170 1.17398 0.80842 0.80326 0.84452 1.90830 1.59973 1.71958 1.21441 1.19907 1.01412 1.00085 0.89013 1.21075 0.97656 0.95206 1.00565 1.18460 1.01737 0.99065 0.95645 1.20701 0.93948 0.95043 0.99477 1.21025 1.00610 1.01364 0.93904 1.21328 0.97362 0.92832 0.98950 1.20435 0.97626 1.00940 0.97268 1.18671 0.94056 0.90547 0.97594 1.41858 1.33728 1.25259 1.16587 0.73063 1.21461 0.94604 0.84785 0.97544 0.94283 0.97933 0.90264 0.76222 0.92758 0.90560 0.75525 0.82840 0.84378 0.83308 0.82688 0.83941 0.96955 0.94944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.87 10.09 21.65 0.22 -54.66 16 2 C -0.07 -3.65 5.49 84.86 0.47 -3.18 16 3 Si 0.98 45.34 29.55 68.60 2.03 47.36 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 7 C -0.24 -13.12 10.27 84.03 0.86 -12.26 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.62 -31.10 3.39 -691.99 -2.35 -33.44 16 10 C 0.13 5.83 5.62 86.86 0.49 6.32 16 11 C 0.09 3.20 4.17 31.98 0.13 3.33 16 12 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 13 O -0.57 -20.24 12.33 -148.98 -1.84 -22.08 16 14 C -0.09 -2.79 2.89 -9.61 -0.03 -2.82 16 15 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 16 C 0.16 4.56 4.50 86.38 0.39 4.95 16 17 N -0.71 -17.56 5.47 -466.72 -2.55 -20.11 16 18 C 0.58 16.55 7.80 86.56 0.68 17.22 16 19 O -0.56 -20.32 16.84 -4.18 -0.07 -20.39 16 20 C 0.01 0.14 6.97 39.91 0.28 0.41 16 21 C -0.12 -2.84 10.53 22.55 0.24 -2.60 16 22 C -0.14 -3.09 6.16 -21.36 -0.13 -3.22 16 23 C -0.07 -1.20 10.06 22.30 0.22 -0.98 16 24 C -0.15 -1.90 9.96 22.02 0.22 -1.68 16 25 C -0.09 -1.02 10.02 22.31 0.22 -0.79 16 26 C -0.14 -2.07 10.08 22.37 0.23 -1.85 16 27 C 0.10 1.98 7.25 39.14 0.28 2.26 16 28 N -0.57 -10.63 6.07 -177.18 -1.08 -11.70 16 29 H 0.43 5.61 8.12 -92.71 -0.75 4.86 16 30 C 0.14 5.56 6.75 86.73 0.59 6.15 16 31 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 32 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 33 H 0.08 4.21 5.87 -2.39 -0.01 4.19 16 34 H 0.39 11.30 9.12 -74.06 -0.68 10.62 16 35 H 0.05 1.95 7.52 -2.39 -0.02 1.93 16 36 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.41 7.71 7.52 -92.71 -0.70 7.02 16 38 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 39 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 41 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 42 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 43 H 0.01 0.53 7.68 -2.39 -0.02 0.51 16 44 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -75.09 366.56 -1.57 -76.66 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: -1.06 Total: 27.09 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 5.13 Total: 11.27 kcal Atomic # 7 Polarization: -114.16 SS G_CDS: -5.76 Total: -119.91 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -1.91 Total: -42.47 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -75.09 -1.57 -76.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958654393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.645 kcal (2) G-P(sol) polarization free energy of solvation -75.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds