Wall clock time and date at job start Sat Apr 11 2020 02:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 119.99932 * 2 1 4 4 H 1.48503 * 109.47108 * 274.81066 * 3 2 1 5 5 H 1.48497 * 109.47593 * 34.81278 * 3 2 1 6 6 H 1.48503 * 109.46894 * 154.81303 * 3 2 1 7 7 C 1.38811 * 119.99621 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99956 * 170.81578 * 7 2 1 9 9 N 1.36943 * 119.99972 * 350.81398 * 7 2 1 10 10 C 1.48141 * 127.83437 * 164.39251 * 9 7 2 11 11 C 1.54390 * 104.61901 * 140.41449 * 10 9 7 12 12 H 1.08997 * 117.61490 * 242.76655 * 11 10 9 13 13 C 1.54287 * 106.21949 * 23.28104 * 11 10 9 14 14 H 1.09002 * 121.81798 * 221.52766 * 13 11 10 15 15 C 1.48143 * 127.84019 * 344.38500 * 9 7 2 16 16 C 1.52994 * 118.12479 * 87.18399 * 11 10 9 17 17 H 1.08998 * 117.44459 * 14.47422 * 16 11 10 18 18 N 1.46500 * 117.44302 * 159.21384 * 16 11 10 19 19 C 1.34781 * 120.00291 * 205.00380 * 18 16 11 20 20 O 1.21547 * 119.99620 * 359.97438 * 19 18 16 21 21 C 1.47917 * 120.00105 * 179.72447 * 19 18 16 22 22 C 1.39473 * 119.71418 * 180.27164 * 21 19 18 23 23 C 1.38407 * 119.06846 * 180.02562 * 22 21 19 24 24 C 1.38698 * 118.71872 * 359.83538 * 23 22 21 25 25 C 1.39555 * 119.04475 * 0.23642 * 24 23 22 26 26 N 1.31292 * 120.84304 * 359.56908 * 25 24 23 27 27 O 1.35525 * 121.72330 * 180.46268 * 24 23 22 28 28 C 1.42883 * 117.72926 * 342.44576 * 27 24 23 29 29 C 1.53394 * 108.51136 * 49.38557 * 28 27 24 30 30 C 1.50490 * 119.63220 * 179.59776 * 23 22 21 31 31 H 0.97001 * 119.99704 * 359.97438 * 1 2 3 32 32 H 1.08996 * 110.41358 * 21.62441 * 10 9 7 33 33 H 1.09009 * 110.50681 * 259.24394 * 10 9 7 34 34 H 1.08998 * 110.40752 * 338.37713 * 15 9 7 35 35 H 1.09004 * 110.40558 * 100.79792 * 15 9 7 36 36 H 0.97002 * 120.00041 * 25.00176 * 18 16 11 37 37 H 1.08002 * 120.46557 * 0.03608 * 22 21 19 38 38 H 1.08003 * 119.57570 * 179.85153 * 25 24 23 39 39 H 1.08997 * 109.63104 * 169.09746 * 28 27 24 40 40 H 1.09006 * 109.62462 * 289.48710 * 28 27 24 41 41 H 1.09000 * 109.68800 * 55.07606 * 29 28 27 42 42 H 1.09007 * 109.68077 * 175.59570 * 29 28 27 43 43 H 1.08998 * 109.45772 * 282.58589 * 30 23 22 44 44 H 1.09001 * 109.45272 * 42.53482 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3960 2.1051 -1.3952 5 1 1.5023 2.6212 0.7993 6 1 3.5949 1.4129 0.5959 7 6 2.0102 -1.2022 -0.0005 8 1 3.0798 -1.2082 -0.1498 9 7 1.3386 -2.3806 0.1883 10 6 1.8190 -3.7545 -0.0874 11 6 1.2876 -4.5972 1.0921 12 1 2.0205 -5.0706 1.7454 13 6 0.0708 -3.8329 1.6539 14 1 -0.1028 -3.7371 2.7258 15 6 -0.0331 -2.5706 0.7146 16 6 -0.1171 -5.1925 0.9779 17 1 -0.5798 -5.2025 -0.0090 18 7 -0.4381 -6.3351 1.8369 19 6 -1.4006 -7.2045 1.4703 20 8 -2.0026 -7.0402 0.4273 21 6 -1.7204 -8.3614 2.3347 22 6 -2.7136 -9.2605 1.9468 23 6 -3.0023 -10.3381 2.7660 24 6 -2.2890 -10.4882 3.9459 25 6 -1.3100 -9.5480 4.2701 26 7 -1.0559 -8.5379 3.4708 27 8 -2.5152 -11.5255 4.7883 28 6 -3.7415 -12.2444 4.6435 29 6 -3.9212 -12.6077 3.1640 30 6 -4.0778 -11.3110 2.3642 31 1 -0.4850 0.8401 0.0004 32 1 2.9084 -3.7787 -0.1114 33 1 1.4107 -4.1199 -1.0298 34 1 -0.3410 -1.7014 1.2958 35 1 -0.7322 -2.7496 -0.1023 36 1 0.0422 -6.4659 2.6695 37 1 -3.2497 -9.1180 1.0201 38 1 -0.7510 -9.6553 5.1880 39 1 -3.7054 -13.1544 5.2423 40 1 -4.5725 -11.6212 4.9741 41 1 -3.0462 -13.1535 2.8110 42 1 -4.8119 -13.2243 3.0430 43 1 -5.0560 -10.8751 2.5672 44 1 -3.9914 -11.5285 1.2996 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962422313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:18:59 Heat of formation + Delta-G solvation = 23.836773 kcal Electronic energy + Delta-G solvation = -26746.571394 eV Core-core repulsion = 22858.918830 eV Total energy + Delta-G solvation = -3887.652564 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.57001 -39.89109 -38.73629 -37.84326 -35.18749 -34.42452 -32.74987 -32.02470 -31.16061 -30.09783 -26.95514 -26.71932 -25.86868 -25.07771 -23.70838 -22.52929 -21.21491 -20.39437 -19.93731 -19.23698 -18.26621 -18.16368 -17.32027 -16.78229 -16.15834 -16.03531 -15.55314 -15.07139 -14.98156 -14.68438 -14.54953 -14.35467 -13.93301 -13.84634 -13.61721 -13.21223 -13.09385 -12.74679 -12.69892 -12.18022 -12.07621 -11.55759 -11.48805 -11.40883 -11.29332 -10.95337 -10.80905 -10.36807 -10.27336 -10.15690 -10.12709 -9.90071 -9.79794 -9.70821 -9.13232 -8.86024 -8.70011 -8.24843 -6.83825 -5.77027 -3.11306 0.40539 0.76992 2.53451 2.70034 3.08565 3.40443 3.45800 3.48144 3.58867 3.90887 3.97882 4.03188 4.15090 4.25345 4.39411 4.49966 4.55764 4.68787 4.75854 4.89217 4.90384 5.10501 5.22864 5.26552 5.36363 5.42196 5.44886 5.46719 5.51115 5.61828 5.69229 5.85060 5.90039 5.94953 6.11707 6.27276 6.56869 6.71877 6.72829 6.86229 6.92614 7.36226 7.39453 7.57137 7.70626 7.74860 8.23482 8.27442 9.13608 9.76305 10.53704 11.37302 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.039578 B = 0.001958 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.293624 B =14297.391234 C =14501.567789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.156 3.844 11 C -0.182 4.182 12 H 0.103 0.897 13 C -0.182 4.182 14 H 0.106 0.894 15 C 0.188 3.812 16 C 0.091 3.909 17 H 0.133 0.867 18 N -0.677 5.677 19 C 0.576 3.424 20 O -0.534 6.534 21 C 0.047 3.953 22 C -0.071 4.071 23 C -0.130 4.130 24 C 0.101 3.899 25 C 0.081 3.919 26 N -0.426 5.426 27 O -0.305 6.305 28 C 0.057 3.943 29 C -0.161 4.161 30 C -0.081 4.081 31 H 0.255 0.745 32 H 0.052 0.948 33 H 0.028 0.972 34 H 0.089 0.911 35 H 0.030 0.970 36 H 0.409 0.591 37 H 0.153 0.847 38 H 0.171 0.829 39 H 0.112 0.888 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.662 -27.643 10.264 30.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.029 3.971 11 C -0.203 4.203 12 H 0.121 0.879 13 C -0.203 4.203 14 H 0.124 0.876 15 C 0.062 3.938 16 C -0.015 4.015 17 H 0.150 0.850 18 N -0.325 5.325 19 C 0.361 3.639 20 O -0.411 6.411 21 C -0.090 4.090 22 C -0.092 4.092 23 C -0.139 4.139 24 C 0.053 3.947 25 C -0.081 4.081 26 N -0.137 5.137 27 O -0.217 6.217 28 C -0.018 4.018 29 C -0.198 4.198 30 C -0.118 4.118 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.107 0.893 35 H 0.048 0.952 36 H 0.244 0.756 37 H 0.170 0.830 38 H 0.188 0.812 39 H 0.130 0.870 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.105 0.895 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.346 -26.682 9.813 29.629 hybrid contribution -0.141 0.029 0.253 0.291 sum -8.487 -26.654 10.066 29.728 Atomic orbital electron populations 1.69905 1.05055 1.25427 1.55673 1.24915 0.95656 0.98020 1.01769 0.86089 0.78740 0.83291 0.77542 1.21508 1.21587 1.20516 1.18990 0.90821 0.82258 1.43369 0.90520 1.45130 1.13638 0.99991 1.72853 1.21128 0.97210 0.85831 0.92896 1.24268 0.90230 1.02516 1.03302 0.87910 1.25473 1.01733 0.93020 1.00101 0.87563 1.21644 0.86760 0.92249 0.93137 1.21943 0.98983 0.84544 0.95988 0.84968 1.45223 1.37148 1.25338 1.24769 1.17645 0.80098 0.81407 0.84801 1.90799 1.51567 1.74700 1.24015 1.21061 0.96678 0.97394 0.93844 1.21890 0.95604 0.91691 1.00023 1.20103 1.00745 0.98506 0.94509 1.20019 0.96404 0.88859 0.89421 1.22405 0.97023 0.88809 0.99896 1.67532 1.23939 1.19308 1.02965 1.85974 1.39803 1.41619 1.54299 1.23100 0.84925 0.96576 0.97174 1.22266 1.04270 0.97942 0.95345 1.20508 0.96714 0.93107 1.01505 0.93533 0.92966 0.95469 0.89251 0.95203 0.75574 0.82979 0.81163 0.86955 0.91290 0.90108 0.89119 0.89471 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.13 10.87 55.49 0.60 -26.53 16 2 C -0.01 -0.18 5.40 -17.43 -0.09 -0.28 16 3 Si 0.91 22.13 29.56 -169.99 -5.03 17.10 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.23 -6.37 10.35 -15.06 -0.16 -6.53 16 8 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 9 N -0.59 -15.47 3.38 -166.74 -0.56 -16.04 16 10 C 0.16 3.36 7.04 -2.41 -0.02 3.34 16 11 C -0.18 -3.36 6.98 -89.22 -0.62 -3.98 16 12 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 13 C -0.18 -3.60 7.34 -87.38 -0.64 -4.24 16 14 H 0.11 1.97 8.14 -51.93 -0.42 1.54 16 15 C 0.19 4.66 5.76 -0.58 0.00 4.66 16 16 C 0.09 1.63 5.92 -67.93 -0.40 1.23 16 17 H 0.13 2.62 7.40 -51.93 -0.38 2.24 16 18 N -0.68 -10.48 5.55 -54.73 -0.30 -10.78 16 19 C 0.58 9.16 7.80 -12.29 -0.10 9.06 16 20 O -0.53 -10.01 15.89 5.32 0.08 -9.93 16 21 C 0.05 0.62 6.75 -83.03 -0.56 0.06 16 22 C -0.07 -0.79 9.30 -39.06 -0.36 -1.15 16 23 C -0.13 -1.16 5.75 -104.49 -0.60 -1.76 16 24 C 0.10 0.93 6.50 -38.92 -0.25 0.67 16 25 C 0.08 0.80 11.12 -17.29 -0.19 0.60 16 26 N -0.43 -5.10 9.52 -9.61 -0.09 -5.19 16 27 O -0.30 -2.37 10.29 -18.27 -0.19 -2.56 16 28 C 0.06 0.25 7.01 37.36 0.26 0.52 16 29 C -0.16 -0.64 6.20 -26.45 -0.16 -0.80 16 30 C -0.08 -0.45 5.90 -27.91 -0.16 -0.62 16 31 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.09 2.45 6.52 -51.93 -0.34 2.11 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.41 5.59 8.15 -40.82 -0.33 5.26 16 37 H 0.15 1.59 7.64 -52.49 -0.40 1.19 16 38 H 0.17 1.24 8.06 -52.48 -0.42 0.82 16 39 H 0.11 0.26 8.14 -51.93 -0.42 -0.17 16 40 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.17 8.14 -51.92 -0.42 -0.25 16 43 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 364.99 15.07 5.50 5.50 Total: -1.00 -33.30 364.99 -10.13 -43.43 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.08 Total: 4.20 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -4.07 Total: 0.80 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -0.36 Total: -58.54 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -0.10 Total: -12.49 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.30 -10.13 -43.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962422313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.262 kcal (2) G-P(sol) polarization free energy of solvation -33.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds