Wall clock time and date at job start Sat Apr 11 2020 02:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47347 * 2 1 4 4 C 1.52995 * 109.47133 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46900 * 179.97438 * 4 3 2 6 6 C 1.37105 * 120.00279 * 270.00160 * 5 4 3 7 7 H 1.08000 * 119.99579 * 144.83797 * 6 5 4 8 8 C 1.38953 * 119.99701 * 324.83730 * 6 5 4 9 9 N 1.31405 * 120.00066 * 337.86674 * 8 6 5 10 10 Si 1.86796 * 119.99601 * 157.86006 * 8 6 5 11 11 H 1.48506 * 109.47447 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47105 * 119.99879 * 10 8 6 13 13 H 1.48505 * 109.47227 * 240.00317 * 10 8 6 14 14 C 1.34782 * 120.00029 * 90.00625 * 5 4 3 15 15 O 1.21292 * 119.99871 * 4.95099 * 14 5 4 16 16 C 1.50695 * 120.00188 * 184.95766 * 14 5 4 17 17 N 1.46493 * 109.47221 * 185.41854 * 16 14 5 18 18 C 1.35105 * 120.52199 * 269.71870 * 17 16 14 19 19 O 1.21778 * 120.40580 * 0.02562 * 18 17 16 20 20 C 1.46707 * 119.19914 * 179.77891 * 18 17 16 21 21 N 1.30218 * 120.23863 * 0.52094 * 20 18 17 22 22 C 1.34686 * 121.05563 * 359.72338 * 21 20 18 23 23 C 1.40357 * 120.08988 * 180.02562 * 22 21 20 24 24 C 1.36394 * 119.97591 * 180.02562 * 23 22 21 25 25 C 1.38905 * 120.66806 * 359.97438 * 24 23 22 26 26 C 1.37748 * 120.51240 * 0.02562 * 25 24 23 27 27 C 1.38036 * 120.52918 * 89.99577 * 17 16 14 28 28 H 1.09003 * 109.47474 * 60.00064 * 1 2 3 29 29 H 1.09005 * 109.47364 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47329 * 299.99554 * 1 2 3 31 31 H 1.09007 * 109.46989 * 239.99712 * 2 1 3 32 32 H 1.09001 * 109.46947 * 120.00487 * 2 1 3 33 33 H 1.09005 * 109.46674 * 60.00304 * 3 2 1 34 34 H 1.08996 * 109.47170 * 300.00493 * 3 2 1 35 35 H 1.09005 * 109.46920 * 60.00666 * 4 3 2 36 36 H 1.08996 * 109.47667 * 300.00399 * 4 3 2 37 37 H 0.97005 * 119.99788 * 184.25572 * 9 8 6 38 38 H 1.09002 * 109.47312 * 65.41260 * 16 14 5 39 39 H 1.09007 * 109.46758 * 305.41544 * 16 14 5 40 40 H 1.07997 * 119.88281 * 180.25141 * 20 18 17 41 41 H 1.07999 * 120.01446 * 0.04356 * 23 22 21 42 42 H 1.07997 * 119.66696 * 180.02562 * 24 23 22 43 43 H 1.08004 * 119.74223 * 180.02562 * 25 24 23 44 44 H 1.08003 * 120.08543 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0583 2.8236 0.0000 6 6 4.2873 3.4693 -1.1876 7 1 4.0902 4.5277 -1.2735 8 6 4.7730 2.7619 -2.2805 9 7 5.4137 1.6292 -2.0981 10 14 4.5148 3.4210 -4.0092 11 1 3.7702 4.7043 -3.9436 12 1 5.8329 3.6467 -4.6549 13 1 3.7365 2.4366 -4.8032 14 6 4.2826 3.4596 1.1670 15 8 4.1667 2.8614 2.2157 16 6 4.6772 4.9140 1.1688 17 7 4.9871 5.3342 2.5375 18 6 4.0207 5.8380 3.3360 19 8 2.8789 5.9485 2.9273 20 6 4.3623 6.2452 4.7034 21 7 5.5854 6.1307 5.1356 22 6 6.5575 5.6345 4.3464 23 6 7.8689 5.5195 4.8332 24 6 8.8517 5.0172 4.0319 25 6 8.5700 4.6151 2.7325 26 6 7.2913 4.7174 2.2304 27 6 6.2722 5.2271 3.0299 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9562 0.8901 34 1 1.6767 1.9563 -0.8899 35 1 3.9337 0.9285 -0.8892 36 1 3.9330 0.9286 0.8908 37 1 5.8063 1.1667 -2.8550 38 1 3.8537 5.5144 0.7820 39 1 5.5555 5.0529 0.5384 40 1 3.5977 6.6455 5.3526 41 1 8.0997 5.8283 5.8421 42 1 9.8590 4.9305 4.4117 43 1 9.3596 4.2190 2.1111 44 1 7.0799 4.4023 1.2192 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182944797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:19:49 Heat of formation + Delta-G solvation = -30.240825 kcal Electronic energy + Delta-G solvation = -28549.745669 eV Core-core repulsion = 24659.748125 eV Total energy + Delta-G solvation = -3889.997545 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.81761 -40.56737 -39.76767 -37.57888 -37.29809 -36.59600 -35.64156 -33.55728 -31.71430 -31.10658 -30.59688 -29.17256 -26.92822 -25.95685 -24.87144 -24.32653 -23.00012 -22.02191 -21.19374 -20.14395 -19.83442 -19.13404 -18.46340 -17.76201 -16.86346 -16.73564 -16.45432 -16.27033 -16.08558 -16.05956 -15.85852 -15.58715 -15.15505 -14.93746 -14.65340 -14.56229 -14.45052 -13.88315 -13.68868 -13.21893 -13.18794 -13.03574 -13.01400 -12.91228 -12.82487 -12.70156 -12.21407 -12.17647 -12.08734 -12.04697 -11.94752 -11.89387 -11.51357 -11.12784 -10.58250 -10.54713 -9.71331 -9.57778 -9.11152 -8.38885 -6.15017 -0.82025 0.08467 0.75670 1.24891 1.36853 1.47748 1.58962 1.81610 1.90420 2.24924 2.73483 2.90203 2.93898 3.01296 3.11250 3.56733 3.80382 3.89163 3.96294 4.03382 4.09455 4.20221 4.22250 4.27456 4.29438 4.32046 4.48328 4.62826 4.74587 4.75584 4.80140 4.91585 4.93069 4.99622 5.10736 5.14030 5.21148 5.27920 5.35111 5.37845 5.40805 5.49601 5.71364 5.78291 5.88491 6.31253 6.45645 6.58197 7.00425 7.40178 7.85904 8.63076 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.011360 B = 0.004335 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.293952 B = 6456.956292 C = 7607.594034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.115 4.115 4 C 0.114 3.886 5 N -0.436 5.436 6 C -0.371 4.371 7 H 0.098 0.902 8 C 0.017 3.983 9 N -0.880 5.880 10 Si 0.981 3.019 11 H -0.260 1.260 12 H -0.273 1.273 13 H -0.277 1.277 14 C 0.445 3.555 15 O -0.631 6.631 16 C 0.103 3.897 17 N -0.494 5.494 18 C 0.477 3.523 19 O -0.557 6.557 20 C 0.087 3.913 21 N -0.395 5.395 22 C -0.010 4.010 23 C -0.035 4.035 24 C -0.135 4.135 25 C -0.048 4.048 26 C -0.179 4.179 27 C 0.141 3.859 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.029 0.971 34 H 0.057 0.943 35 H 0.101 0.899 36 H 0.031 0.969 37 H 0.277 0.723 38 H 0.110 0.890 39 H 0.130 0.870 40 H 0.227 0.773 41 H 0.168 0.832 42 H 0.178 0.822 43 H 0.163 0.837 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.826 5.272 5.792 9.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.154 4.154 4 C -0.010 4.010 5 N -0.153 5.153 6 C -0.497 4.497 7 H 0.116 0.884 8 C -0.188 4.188 9 N -0.516 5.516 10 Si 0.804 3.196 11 H -0.184 1.184 12 H -0.199 1.199 13 H -0.203 1.203 14 C 0.233 3.767 15 O -0.520 6.520 16 C -0.021 4.021 17 N -0.211 5.211 18 C 0.270 3.730 19 O -0.434 6.434 20 C -0.111 4.111 21 N -0.105 5.105 22 C -0.121 4.121 23 C -0.053 4.053 24 C -0.154 4.154 25 C -0.066 4.066 26 C -0.200 4.200 27 C 0.038 3.962 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.050 0.950 37 H 0.087 0.913 38 H 0.128 0.872 39 H 0.148 0.852 40 H 0.243 0.757 41 H 0.186 0.814 42 H 0.195 0.805 43 H 0.180 0.820 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.536 5.010 6.599 9.965 hybrid contribution -0.681 -0.308 -1.944 2.083 sum 4.855 4.702 4.655 8.207 Atomic orbital electron populations 1.21716 0.94131 1.02478 1.01708 1.21402 0.97158 0.94853 1.01834 1.21772 0.95521 0.97990 1.00105 1.21469 0.93191 0.84287 1.02030 1.43644 1.54654 1.12461 1.04563 1.19786 1.46393 0.95826 0.87736 0.88435 1.26120 0.93201 0.95967 1.03508 1.69947 1.30238 1.17953 1.33493 0.85071 0.78459 0.78869 0.77209 1.18400 1.19871 1.20266 1.20873 0.81573 0.89959 0.84289 1.90518 1.59254 1.69130 1.33081 1.21441 1.04950 0.94145 0.81558 1.45480 1.08190 1.53121 1.14306 1.20618 0.84775 0.78700 0.88902 1.90829 1.19910 1.56573 1.76138 1.26381 0.95059 0.98827 0.90786 1.67883 1.00547 1.07670 1.34421 1.18792 0.96341 1.08111 0.88897 1.21147 0.88093 0.94786 1.01321 1.21283 1.01394 0.99572 0.93150 1.21648 0.94946 0.93595 0.96451 1.21099 0.93638 1.04587 1.00647 1.19276 0.84328 0.97728 0.94907 0.92468 0.90789 0.93310 0.91579 0.92561 0.95165 0.92435 0.88166 0.95041 0.91273 0.87166 0.85187 0.75711 0.81412 0.80473 0.81957 0.85966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 9.91 71.98 0.71 -3.30 16 2 C -0.11 -3.94 5.93 30.59 0.18 -3.75 16 3 C -0.12 -4.95 5.54 30.59 0.17 -4.78 16 4 C 0.11 5.61 5.04 86.38 0.44 6.05 16 5 N -0.44 -22.25 2.54 -635.54 -1.61 -23.87 16 6 C -0.37 -18.07 8.57 84.04 0.72 -17.35 16 7 H 0.10 4.51 7.17 -2.91 -0.02 4.49 16 8 C 0.02 0.81 4.96 84.93 0.42 1.23 16 9 N -0.88 -44.00 11.34 21.66 0.25 -43.75 16 10 Si 0.98 37.16 29.61 68.60 2.03 39.19 16 11 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 12 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 13 H -0.28 -10.49 7.11 99.48 0.71 -9.78 16 14 C 0.44 22.75 7.69 87.65 0.67 23.42 16 15 O -0.63 -36.17 15.98 -3.07 -0.05 -36.22 16 16 C 0.10 4.45 3.99 85.63 0.34 4.79 16 17 N -0.49 -20.06 2.16 -638.80 -1.38 -21.44 16 18 C 0.48 19.26 7.62 86.40 0.66 19.92 16 19 O -0.56 -25.72 16.80 -4.60 -0.08 -25.80 16 20 C 0.09 2.70 11.44 87.15 1.00 3.69 16 21 N -0.40 -11.89 10.34 -183.12 -1.89 -13.78 16 22 C -0.01 -0.31 6.57 39.83 0.26 -0.04 16 23 C -0.03 -0.76 9.95 22.36 0.22 -0.54 16 24 C -0.13 -2.43 9.96 22.00 0.22 -2.21 16 25 C -0.05 -1.08 10.02 22.31 0.22 -0.85 16 26 C -0.18 -5.70 9.21 22.38 0.21 -5.50 16 27 C 0.14 5.00 6.52 39.01 0.25 5.25 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.10 5.13 5.37 -2.38 -0.01 5.12 16 36 H 0.03 1.65 7.36 -2.39 -0.02 1.64 16 37 H 0.28 12.90 8.31 -92.70 -0.77 12.13 16 38 H 0.11 4.75 7.35 -2.39 -0.02 4.73 16 39 H 0.13 5.09 5.96 -2.38 -0.01 5.07 16 40 H 0.23 5.03 8.06 -2.91 -0.02 5.01 16 41 H 0.17 2.64 8.06 -2.91 -0.02 2.61 16 42 H 0.18 1.65 8.06 -2.91 -0.02 1.62 16 43 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 44 H 0.12 4.29 6.19 -2.91 -0.02 4.27 16 Total: -1.00 -70.81 369.98 4.99 -65.83 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: 1.02 Total: 33.81 kcal Atomic # 6 Polarization: 19.33 SS G_CDS: 6.70 Total: 26.03 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -4.64 Total: -102.84 kcal Atomic # 8 Polarization: -61.89 SS G_CDS: -0.13 Total: -62.02 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.03 Total: 39.19 kcal Total: -70.81 4.99 -65.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182944797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.584 kcal (2) G-P(sol) polarization free energy of solvation -70.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds