Wall clock time and date at job start Sat Apr 11 2020 02:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47397 * 2 1 4 4 C 1.53002 * 109.47232 * 184.82257 * 3 2 1 5 5 N 1.46500 * 109.47184 * 184.84948 * 4 3 2 6 6 C 1.36475 * 119.99658 * 93.59901 * 5 4 3 7 7 H 1.07999 * 119.99888 * 221.78346 * 6 5 4 8 8 C 1.39315 * 119.99750 * 41.78653 * 6 5 4 9 9 N 1.31191 * 119.99594 * 208.28293 * 8 6 5 10 10 Si 1.86800 * 120.00265 * 28.28509 * 8 6 5 11 11 H 1.48497 * 109.47065 * 94.72451 * 10 8 6 12 12 H 1.48501 * 109.46785 * 214.72390 * 10 8 6 13 13 H 1.48496 * 109.47027 * 334.71884 * 10 8 6 14 14 C 1.34776 * 119.99999 * 273.60617 * 5 4 3 15 15 O 1.21590 * 119.99974 * 355.13557 * 14 5 4 16 16 C 1.47900 * 119.99677 * 175.14354 * 14 5 4 17 17 N 1.31969 * 126.65976 * 185.73839 * 16 14 5 18 18 C 1.34058 * 105.60189 * 179.85978 * 17 16 14 19 19 C 1.50709 * 126.18136 * 180.13097 * 18 17 16 20 20 C 1.50698 * 109.46544 * 270.30277 * 19 18 17 21 21 C 1.38233 * 120.00109 * 269.72143 * 20 19 18 22 22 C 1.38233 * 120.00044 * 179.77265 * 21 20 19 23 23 C 1.38236 * 120.00057 * 0.50567 * 22 21 20 24 24 C 1.38240 * 119.99956 * 359.74855 * 23 22 21 25 25 C 1.38236 * 119.99878 * 0.02562 * 24 23 22 26 26 N 1.30119 * 107.64106 * 0.40684 * 18 17 16 27 27 O 1.21291 * 110.42917 * 359.74395 * 26 18 17 28 28 H 1.09001 * 109.47367 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46797 * 300.00121 * 1 2 3 30 30 H 1.09003 * 109.47032 * 59.99200 * 1 2 3 31 31 H 1.09001 * 109.46797 * 239.99879 * 2 1 3 32 32 H 1.09003 * 109.47259 * 120.00297 * 2 1 3 33 33 H 1.09006 * 109.46809 * 64.82370 * 3 2 1 34 34 H 1.08994 * 109.47410 * 304.82758 * 3 2 1 35 35 H 1.09003 * 109.46634 * 64.85015 * 4 3 2 36 36 H 1.09002 * 109.47173 * 304.85191 * 4 3 2 37 37 H 0.96999 * 119.99934 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.46698 * 30.30206 * 19 18 17 39 39 H 1.08997 * 109.46707 * 150.30608 * 19 18 17 40 40 H 1.08005 * 119.99928 * 0.02562 * 21 20 19 41 41 H 1.08001 * 120.00436 * 180.23346 * 22 21 20 42 42 H 1.07999 * 120.00275 * 179.72867 * 23 22 21 43 43 H 1.07999 * 120.00047 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.00352 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5653 1.4441 -0.1213 5 7 4.0630 2.8171 -0.0051 6 6 4.4573 3.2994 1.2092 7 1 4.1907 4.3037 1.5038 8 6 5.2038 2.4963 2.0686 9 7 5.1252 2.6739 3.3660 10 14 6.3167 1.1667 1.3736 11 1 7.6963 1.6983 1.2351 12 1 6.3258 -0.0007 2.2914 13 1 5.8124 0.7454 0.0419 14 6 4.1312 3.6039 -1.0972 15 8 3.8641 3.1482 -2.1924 16 6 4.5310 5.0215 -0.9635 17 7 4.5398 5.9312 -1.9195 18 6 4.9680 7.0609 -1.3383 19 6 5.1494 8.3956 -2.0141 20 6 6.5486 8.4934 -2.5651 21 6 7.5635 9.0164 -1.7856 22 6 8.8479 9.1017 -2.2894 23 6 9.1154 8.6738 -3.5764 24 6 8.0995 8.1557 -4.3577 25 6 6.8160 8.0661 -3.8523 26 7 5.2042 6.7953 -0.0866 27 8 4.9610 5.6313 0.1525 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.7490 1.9307 0.9301 34 1 1.6080 1.9807 -0.8435 35 1 3.8532 1.0340 -1.0893 36 1 3.9937 0.8338 0.6738 37 1 5.6453 2.1151 3.9644 38 1 4.4308 8.4914 -2.8280 39 1 4.9873 9.1943 -1.2903 40 1 7.3536 9.3545 -0.7816 41 1 9.6416 9.5068 -1.6792 42 1 10.1180 8.7446 -3.9715 43 1 8.3084 7.8218 -5.3633 44 1 6.0222 7.6617 -4.4628 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192269593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:19:56 Heat of formation + Delta-G solvation = 44.604835 kcal Electronic energy + Delta-G solvation = -27659.693843 eV Core-core repulsion = 23772.941850 eV Total energy + Delta-G solvation = -3886.751993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -46.53888 -40.89512 -40.23445 -37.70697 -36.97033 -35.70080 -34.47993 -34.10771 -32.74719 -31.83311 -30.28468 -28.59053 -27.39579 -26.24526 -24.46818 -24.13495 -23.48833 -22.42996 -22.08495 -21.30629 -20.01521 -19.19291 -18.11656 -17.83729 -17.61740 -17.19082 -16.58863 -16.20018 -16.13655 -16.02868 -15.88475 -15.46818 -14.80696 -14.68903 -14.56253 -14.35814 -14.33563 -13.94185 -13.74920 -13.51488 -13.40481 -13.18212 -13.11941 -12.87438 -12.79318 -12.28024 -12.19775 -12.09018 -12.06852 -11.95389 -11.91874 -11.69222 -11.43858 -11.36948 -11.10324 -10.94394 -9.92404 -9.87348 -9.77171 -8.70401 -6.27758 -0.41725 0.28164 0.45043 0.96338 1.22731 1.34981 1.41803 1.48257 1.93898 2.06372 2.21563 2.65023 2.79813 3.05240 3.25846 3.72647 3.82560 3.94019 4.03502 4.06326 4.10871 4.25067 4.26076 4.34741 4.39754 4.43318 4.57419 4.58932 4.69108 4.72317 4.76248 4.79545 4.91557 4.98612 5.04603 5.05843 5.11432 5.20611 5.33211 5.40327 5.50045 5.50457 5.56280 5.60778 5.85954 6.05438 6.08387 6.64907 6.94145 7.15792 7.39332 8.41965 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.003348 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.636252 B = 8361.067845 C = 9134.711216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.122 4.122 4 C 0.108 3.892 5 N -0.419 5.419 6 C -0.374 4.374 7 H 0.092 0.908 8 C 0.061 3.939 9 N -0.851 5.851 10 Si 0.902 3.098 11 H -0.281 1.281 12 H -0.256 1.256 13 H -0.241 1.241 14 C 0.538 3.462 15 O -0.573 6.573 16 C 0.171 3.829 17 N -0.461 5.461 18 C 0.173 3.827 19 C 0.018 3.982 20 C -0.103 4.103 21 C -0.120 4.120 22 C -0.129 4.129 23 C -0.121 4.121 24 C -0.129 4.129 25 C -0.117 4.117 26 N -0.404 5.404 27 O 0.105 5.895 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.290 0.710 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.127 0.873 41 H 0.143 0.857 42 H 0.148 0.852 43 H 0.143 0.857 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.071 5.182 -8.287 9.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.161 4.161 4 C -0.014 4.014 5 N -0.137 5.137 6 C -0.502 4.502 7 H 0.109 0.891 8 C -0.151 4.151 9 N -0.483 5.483 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.180 1.180 13 H -0.164 1.164 14 C 0.324 3.676 15 O -0.457 6.457 16 C -0.050 4.050 17 N -0.199 5.199 18 C -0.101 4.101 19 C -0.021 4.021 20 C -0.104 4.104 21 C -0.138 4.138 22 C -0.147 4.147 23 C -0.139 4.139 24 C -0.147 4.147 25 C -0.135 4.135 26 N -0.113 5.113 27 O 0.048 5.952 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.145 0.855 41 H 0.161 0.839 42 H 0.166 0.834 43 H 0.161 0.839 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.189 5.609 -8.426 10.356 hybrid contribution 0.560 -0.484 0.398 0.840 sum 2.750 5.125 -8.028 9.913 Atomic orbital electron populations 1.21728 0.94513 1.02410 1.01732 1.21461 0.97030 0.94467 1.02658 1.21843 0.93627 0.98899 1.01709 1.22039 0.95558 0.81704 1.02051 1.43614 1.51863 1.12264 1.05982 1.19077 1.36834 1.02782 0.91459 0.89099 1.25861 0.95992 0.98860 0.94375 1.69772 1.35830 1.39234 1.03456 0.86541 0.79984 0.79870 0.81256 1.20684 1.17988 1.16425 1.16611 0.84663 0.81529 0.84829 1.90712 1.56351 1.72517 1.26087 1.28380 0.97394 0.98003 0.81196 1.71952 1.19476 0.99161 1.29278 1.26305 0.98137 0.98174 0.87443 1.19090 0.95804 0.86498 1.00674 1.19674 0.94539 1.01087 0.95125 1.21307 0.93336 0.99433 0.99768 1.21462 0.96633 1.00137 0.96490 1.21553 1.00263 0.97853 0.94243 1.21475 0.92578 0.99469 1.01177 1.21326 0.98208 0.98743 0.95265 1.74586 1.20983 0.96480 1.19252 1.85846 1.58534 1.15599 1.35236 0.90999 0.92970 0.92886 0.91115 0.91329 0.92273 0.92788 0.90471 0.90348 0.89983 0.86056 0.86209 0.85465 0.83878 0.83448 0.83884 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.91 71.98 0.71 -2.64 16 2 C -0.12 -3.18 5.93 30.60 0.18 -3.00 16 3 C -0.12 -4.29 5.52 30.59 0.17 -4.12 16 4 C 0.11 4.33 3.53 86.38 0.31 4.64 16 5 N -0.42 -19.57 2.06 -638.83 -1.31 -20.88 16 6 C -0.37 -18.83 8.37 84.23 0.70 -18.12 16 7 H 0.09 5.01 6.12 -2.91 -0.02 5.00 16 8 C 0.06 2.99 5.11 85.05 0.43 3.42 16 9 N -0.85 -43.59 13.95 21.72 0.30 -43.29 16 10 Si 0.90 37.67 26.33 68.60 1.81 39.48 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 13 H -0.24 -9.69 5.68 99.48 0.56 -9.12 16 14 C 0.54 26.09 7.62 86.80 0.66 26.75 16 15 O -0.57 -29.00 16.71 -4.00 -0.07 -29.07 16 16 C 0.17 8.03 7.89 87.35 0.69 8.72 16 17 N -0.46 -20.00 11.56 -302.83 -3.50 -23.50 16 18 C 0.17 6.52 7.43 138.55 1.03 7.55 16 19 C 0.02 0.48 5.97 29.10 0.17 0.65 16 20 C -0.10 -2.75 5.12 -19.87 -0.10 -2.86 16 21 C -0.12 -3.01 9.70 22.27 0.22 -2.79 16 22 C -0.13 -2.79 10.05 22.27 0.22 -2.56 16 23 C -0.12 -2.43 10.05 22.27 0.22 -2.21 16 24 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 25 C -0.12 -2.99 9.70 22.27 0.22 -2.77 16 26 N -0.40 -17.10 12.15 -58.68 -0.71 -17.81 16 27 O 0.11 4.96 8.33 69.23 0.58 5.54 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 34 H 0.05 1.97 8.14 -2.39 -0.02 1.96 16 35 H 0.08 3.05 7.45 -2.39 -0.02 3.03 16 36 H 0.08 3.06 4.67 -2.39 -0.01 3.05 16 37 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 38 H 0.12 2.78 8.09 -2.39 -0.02 2.76 16 39 H 0.12 2.68 8.08 -2.39 -0.02 2.66 16 40 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 41 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 42 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 43 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 44 H 0.13 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -61.79 372.93 4.03 -57.77 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.87 Total: 23.71 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 6.06 Total: 8.06 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -5.22 Total: -105.48 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: 0.51 Total: -23.53 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 1.81 Total: 39.48 kcal Total: -61.79 4.03 -57.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192269593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.371 kcal (2) G-P(sol) polarization free energy of solvation -61.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds