Wall clock time and date at job start Sat Apr 11 2020 02:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47570 * 2 1 4 4 C 1.53002 * 109.46724 * 240.00239 * 2 1 3 5 5 O 1.45197 * 109.46910 * 120.00615 * 2 1 3 6 6 C 1.34637 * 117.00182 * 59.99813 * 5 2 1 7 7 O 1.21506 * 120.00089 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99722 * 179.97438 * 6 5 2 9 9 C 1.47832 * 134.35581 * 179.97438 * 8 6 5 10 10 C 1.52681 * 85.67479 * 203.68156 * 9 8 6 11 11 C 1.47840 * 134.36185 * 0.02562 * 8 6 5 12 12 C 1.53074 * 116.31704 * 95.45325 * 10 9 8 13 13 C 1.54139 * 108.74619 * 102.28026 * 12 10 9 14 14 H 1.09001 * 109.91149 * 286.59609 * 13 12 10 15 15 O 1.42906 * 109.90669 * 165.53260 * 13 12 10 16 16 C 1.42894 * 114.00137 * 149.99980 * 15 13 12 17 17 C 1.50706 * 109.47263 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99302 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00436 * 179.72549 * 17 16 15 20 20 N 1.31515 * 119.99684 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00405 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46683 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47426 * 119.99743 * 21 19 17 24 24 H 1.48501 * 109.46833 * 239.99986 * 21 19 17 25 25 C 1.55233 * 107.13685 * 46.15712 * 13 12 10 26 26 S 1.82256 * 115.35175 * 220.03648 * 10 9 8 27 27 H 1.08998 * 109.46865 * 299.99967 * 1 2 3 28 28 H 1.09004 * 109.47133 * 59.99389 * 1 2 3 29 29 H 1.08992 * 109.47532 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47537 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47392 * 300.00452 * 3 2 1 32 32 H 1.09007 * 109.46930 * 59.99970 * 3 2 1 33 33 H 1.09001 * 109.47154 * 299.99871 * 4 2 1 34 34 H 1.08997 * 109.47530 * 60.00701 * 4 2 1 35 35 H 1.09002 * 109.46861 * 179.97438 * 4 2 1 36 36 H 1.08997 * 113.84271 * 89.49332 * 9 8 6 37 37 H 1.09008 * 113.95618 * 317.87782 * 9 8 6 38 38 H 1.09000 * 113.83519 * 42.12956 * 11 8 6 39 39 H 1.08997 * 113.83800 * 270.50816 * 11 8 6 40 40 H 1.08996 * 109.64416 * 342.41207 * 12 10 9 41 41 H 1.09009 * 109.63745 * 222.14536 * 12 10 9 42 42 H 1.09001 * 109.47678 * 60.00187 * 16 15 13 43 43 H 1.08998 * 109.47532 * 300.00132 * 16 15 13 44 44 H 0.97004 * 120.00247 * 180.02562 * 20 19 17 45 45 H 1.08990 * 110.85135 * 76.68478 * 25 13 12 46 46 H 1.09003 * 110.85011 * 200.30915 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0139 -0.6846 1.1855 6 6 1.6521 -1.9724 1.3381 7 8 0.9508 -2.5095 0.5039 8 7 2.0679 -2.6659 2.4164 9 6 1.8702 -4.0510 2.8938 10 6 2.1705 -3.4923 4.2826 11 6 2.9027 -2.3441 3.5935 12 6 0.9593 -3.1093 5.1365 13 6 0.7195 -4.2169 6.1813 14 1 0.2992 -5.0987 5.6976 15 8 -0.1725 -3.7461 7.1936 16 6 -0.9752 -4.7707 7.7834 17 6 -1.8724 -4.1649 8.8319 18 1 -1.8336 -3.1035 9.0279 19 6 -2.7469 -4.9646 9.5365 20 7 -2.7986 -6.2560 9.2933 21 14 -3.8595 -4.2136 10.8357 22 1 -3.6097 -2.7520 10.9162 23 1 -5.2787 -4.4544 10.4713 24 1 -3.5738 -4.8375 12.1526 25 6 2.0973 -4.5599 6.8088 26 16 3.2047 -4.5536 5.3437 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6765 -1.7489 -1.2493 34 1 1.6767 -0.2073 -2.1393 35 1 3.1299 -0.7208 -1.2496 36 1 2.6198 -4.7536 2.5299 37 1 0.8503 -4.4178 2.7776 38 1 2.6945 -1.3660 4.0270 39 1 3.9665 -2.5274 3.4424 40 1 0.0797 -3.0088 4.5007 41 1 1.1525 -2.1635 5.6430 42 1 -0.3295 -5.5173 8.2457 43 1 -1.5841 -5.2438 7.0130 44 1 -3.4141 -6.8187 9.7888 45 1 2.3980 -3.7960 7.5256 46 1 2.0768 -5.5447 7.2754 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205610000.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:20:26 Heat of formation + Delta-G solvation = -111.053783 kcal Electronic energy + Delta-G solvation = -26280.855940 eV Core-core repulsion = 22490.505283 eV Total energy + Delta-G solvation = -3790.350657 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.04467 -40.69801 -39.03942 -37.68602 -35.36136 -35.03399 -34.09910 -30.85018 -29.29747 -28.37449 -28.30458 -27.83395 -27.61825 -24.79030 -23.68348 -22.65230 -21.22944 -20.16359 -19.09410 -18.72735 -17.96672 -17.90406 -17.62397 -16.98901 -16.53311 -16.39021 -16.18384 -15.78447 -15.41517 -15.23841 -15.18050 -14.80188 -14.47818 -14.30737 -13.97215 -13.60733 -13.44435 -13.34945 -13.11993 -12.99722 -12.93703 -12.89129 -12.87054 -12.72121 -12.66335 -12.54531 -12.46066 -12.22195 -12.15946 -11.70512 -11.41698 -11.41074 -11.27568 -11.07740 -10.86816 -10.29085 -10.00156 -8.83155 -8.34462 -6.46662 0.39254 0.97735 1.20320 1.40154 1.40570 1.55190 1.72606 2.31992 2.62331 2.76686 3.00003 3.01752 3.45843 3.57815 3.72893 3.74833 3.79306 3.93854 3.98637 4.03176 4.10218 4.33722 4.38529 4.45395 4.50847 4.58318 4.60242 4.60926 4.69790 4.74608 4.75873 4.81223 4.86194 4.86896 4.87537 4.94475 5.12361 5.15396 5.27196 5.32130 5.44255 5.53077 5.92219 6.44149 6.46160 6.75585 7.16619 7.25006 8.77625 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.015190 B = 0.002587 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.894661 B =10818.695446 C =11973.280475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.123 3.877 3 C -0.134 4.134 4 C -0.178 4.178 5 O -0.365 6.365 6 C 0.671 3.329 7 O -0.593 6.593 8 N -0.635 5.635 9 C 0.155 3.845 10 C -0.051 4.051 11 C 0.145 3.855 12 C -0.096 4.096 13 C 0.078 3.922 14 H 0.064 0.936 15 O -0.389 6.389 16 C 0.210 3.790 17 C -0.548 4.548 18 H 0.063 0.937 19 C 0.008 3.992 20 N -0.929 5.929 21 Si 0.980 3.020 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.271 1.271 25 C -0.093 4.093 26 S -0.225 6.225 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.120 0.880 40 H 0.082 0.918 41 H 0.095 0.905 42 H -0.006 1.006 43 H -0.013 1.013 44 H 0.271 0.729 45 H 0.102 0.898 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.974 11.887 -17.778 25.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.087 3.913 3 C -0.191 4.191 4 C -0.235 4.235 5 O -0.280 6.280 6 C 0.427 3.573 7 O -0.484 6.484 8 N -0.378 5.378 9 C 0.033 3.967 10 C -0.162 4.162 11 C 0.022 3.978 12 C -0.135 4.135 13 C 0.018 3.982 14 H 0.082 0.918 15 O -0.309 6.309 16 C 0.135 3.865 17 C -0.585 4.585 18 H 0.081 0.919 19 C -0.191 4.191 20 N -0.568 5.568 21 Si 0.803 3.197 22 H -0.188 1.188 23 H -0.199 1.199 24 H -0.197 1.197 25 C -0.242 4.242 26 S 0.005 5.995 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.135 0.865 37 H 0.108 0.892 38 H 0.125 0.875 39 H 0.138 0.862 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.012 0.988 43 H 0.005 0.995 44 H 0.080 0.920 45 H 0.120 0.880 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 14.672 11.401 -18.312 26.088 hybrid contribution -1.923 -0.099 0.815 2.091 sum 12.750 11.302 -17.497 24.422 Atomic orbital electron populations 1.22487 0.94304 1.03495 1.03567 1.22463 0.94412 0.92885 0.81555 1.21880 1.02532 0.90403 1.04318 1.22458 1.01713 1.02047 0.97274 1.86323 1.71321 1.22761 1.47546 1.17632 0.78567 0.80810 0.80259 1.90896 1.42777 1.71352 1.43406 1.48849 1.53564 1.14192 1.21220 1.23369 1.04155 0.82716 0.86471 1.24206 0.97491 0.98999 0.95537 1.23375 0.96383 0.98510 0.79556 1.21800 0.96676 0.99559 0.95425 1.23256 0.89155 0.96914 0.88881 0.91793 1.87871 1.53610 1.36238 1.53150 1.19916 0.88413 0.86517 0.91626 1.21397 1.21230 0.95560 1.20358 0.91907 1.25918 0.98422 0.95182 0.99582 1.70063 1.38425 1.05556 1.42729 0.85171 0.77835 0.78792 0.77856 1.18773 1.19876 1.19667 1.24807 0.95243 1.06222 0.97908 1.87206 1.31918 1.66549 1.13870 0.92284 0.88871 0.92283 0.90946 0.87821 0.91419 0.92226 0.88930 0.91717 0.86504 0.89213 0.87516 0.86224 0.89942 0.88661 0.98832 0.99529 0.92022 0.87975 0.88227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.53 8.37 71.98 0.60 -2.92 16 2 C 0.12 2.27 1.13 -10.79 -0.01 2.26 16 3 C -0.13 -1.58 8.85 71.98 0.64 -0.94 16 4 C -0.18 -3.11 8.37 71.98 0.60 -2.51 16 5 O -0.36 -8.56 9.87 -55.46 -0.55 -9.10 16 6 C 0.67 18.00 8.22 129.79 1.07 19.07 16 7 O -0.59 -18.78 12.61 19.82 0.25 -18.53 16 8 N -0.63 -14.52 3.62 -989.89 -3.58 -18.10 16 9 C 0.16 3.31 8.10 86.02 0.70 4.01 16 10 C -0.05 -1.11 1.30 -10.93 -0.01 -1.12 16 11 C 0.15 2.59 8.22 86.00 0.71 3.30 16 12 C -0.10 -2.61 5.50 31.00 0.17 -2.44 16 13 C 0.08 2.66 3.05 31.75 0.10 2.76 16 14 H 0.06 2.26 7.80 -2.39 -0.02 2.24 16 15 O -0.39 -17.68 10.03 -148.98 -1.49 -19.18 16 16 C 0.21 11.25 5.53 71.24 0.39 11.65 16 17 C -0.55 -31.60 9.43 25.60 0.24 -31.36 16 18 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 19 C 0.01 0.44 5.46 84.65 0.46 0.90 16 20 N -0.93 -54.62 13.29 21.45 0.28 -54.34 16 21 Si 0.98 43.49 29.54 68.60 2.03 45.52 16 22 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 C -0.09 -2.74 7.09 72.75 0.52 -2.22 16 26 S -0.22 -5.24 22.65 -56.49 -1.28 -6.52 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 1.52 5.88 -2.39 -0.01 1.51 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.06 1.41 5.88 -2.39 -0.01 1.40 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.09 2.06 8.08 -2.38 -0.02 2.04 16 38 H 0.11 1.73 8.08 -2.39 -0.02 1.71 16 39 H 0.12 1.69 8.14 -2.39 -0.02 1.68 16 40 H 0.08 2.36 7.94 -2.39 -0.02 2.34 16 41 H 0.09 2.52 8.09 -2.38 -0.02 2.51 16 42 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 43 H -0.01 -0.74 8.09 -2.39 -0.02 -0.76 16 44 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 45 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 46 H 0.10 3.03 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -68.27 385.23 2.78 -65.49 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.95 Total: 14.35 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 6.17 Total: 0.42 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: -3.29 Total: -72.44 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -1.79 Total: -46.81 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -1.28 Total: -6.52 kcal Total: -68.27 2.78 -65.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610000.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.567 kcal (2) G-P(sol) polarization free energy of solvation -68.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds