Wall clock time and date at job start Sat Apr 11 2020 02:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38432 * 122.54054 * 2 1 4 4 C 1.33386 * 114.91950 * 180.02562 * 3 2 1 5 5 S 1.75884 * 109.59475 * 359.75413 * 4 3 2 6 6 C 1.33390 * 122.54148 * 180.02562 * 2 1 3 7 7 C 1.50704 * 125.20176 * 359.95934 * 6 2 1 8 8 H 1.09007 * 109.46651 * 344.99865 * 7 6 2 9 9 C 1.53002 * 109.47280 * 104.99397 * 7 6 2 10 10 C 1.50696 * 109.46862 * 185.00031 * 9 7 6 11 11 C 1.38235 * 120.00092 * 269.72579 * 10 9 7 12 12 C 1.38232 * 120.00196 * 179.76751 * 11 10 9 13 13 C 1.38239 * 119.99644 * 0.51299 * 12 11 10 14 14 C 1.38232 * 120.00382 * 359.74267 * 13 12 11 15 15 C 1.38229 * 119.99953 * 90.00725 * 10 9 7 16 16 N 1.46900 * 109.47012 * 224.99894 * 7 6 2 17 17 C 1.46901 * 110.99890 * 84.99884 * 16 7 6 18 18 H 1.09002 * 109.47401 * 34.99821 * 17 16 7 19 19 C 1.53002 * 109.46860 * 274.99873 * 17 16 7 20 20 C 1.53000 * 109.46769 * 155.00113 * 17 16 7 21 21 C 1.50698 * 109.46984 * 294.99593 * 20 17 16 22 22 H 1.08008 * 120.00253 * 0.02562 * 21 20 17 23 23 C 1.37881 * 120.00032 * 180.02562 * 21 20 17 24 24 N 1.31516 * 119.99811 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99974 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47359 * 59.99932 * 25 23 21 27 27 H 1.48500 * 109.46959 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.46855 * 299.99342 * 25 23 21 29 29 H 1.09008 * 109.47132 * 269.98030 * 1 2 3 30 30 H 1.09007 * 109.47184 * 29.97687 * 1 2 3 31 31 H 1.08996 * 109.47648 * 149.97533 * 1 2 3 32 32 H 1.07995 * 122.53926 * 359.97438 * 3 2 1 33 33 H 1.08007 * 125.20220 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.46852 * 305.00370 * 9 7 6 35 35 H 1.09000 * 109.46489 * 65.00254 * 9 7 6 36 36 H 1.07998 * 119.99989 * 0.02562 * 11 10 9 37 37 H 1.08001 * 120.00567 * 180.22961 * 12 11 10 38 38 H 1.08004 * 119.99889 * 179.71953 * 13 12 11 39 39 H 1.07995 * 120.00508 * 179.97438 * 14 13 12 40 40 H 1.08000 * 120.00230 * 0.02562 * 15 10 9 41 41 H 1.00901 * 110.99385 * 208.95106 * 16 7 6 42 42 H 1.09000 * 109.46986 * 180.02562 * 19 17 16 43 43 H 1.09002 * 109.47075 * 299.99593 * 19 17 16 44 44 H 1.08996 * 109.47407 * 60.00550 * 19 17 16 45 45 H 1.08990 * 109.47170 * 54.99770 * 20 17 16 46 46 H 1.09001 * 109.46952 * 174.99846 * 20 17 16 47 47 H 0.96997 * 119.99784 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5736 0.9901 -0.0005 5 16 3.9385 -0.7305 0.0060 6 6 2.2245 -1.1245 -0.0005 7 6 1.6537 -2.5192 -0.0003 8 1 0.5975 -2.4795 0.2664 9 6 1.8050 -3.1325 -1.3938 10 6 1.1259 -4.4774 -1.4271 11 6 1.8366 -5.6188 -1.1064 12 6 1.2124 -6.8519 -1.1324 13 6 -0.1199 -6.9447 -1.4893 14 6 -0.8293 -5.8039 -1.8151 15 6 -0.2063 -4.5702 -1.7841 16 7 2.3752 -3.3434 0.9786 17 6 1.8090 -3.1793 2.3241 18 1 0.7301 -3.0428 2.2503 19 6 2.4334 -1.9536 2.9941 20 6 2.1096 -4.4255 3.1593 21 6 1.3930 -5.6117 2.5673 22 1 0.7845 -5.4891 1.6835 23 6 1.5143 -6.8536 3.1540 24 7 2.2557 -7.0030 4.2299 25 14 0.6267 -8.3241 2.4197 26 1 1.0928 -8.5385 1.0262 27 1 0.9182 -9.5336 3.2304 28 1 -0.8364 -8.0692 2.4187 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 1.7965 2.1464 -0.0004 33 1 4.3078 1.7823 -0.0002 34 1 1.3457 -2.4750 -2.1319 35 1 2.8635 -3.2542 -1.6241 36 1 2.8786 -5.5467 -0.8316 37 1 1.7667 -7.7433 -0.8782 38 1 -0.6064 -7.9086 -1.5139 39 1 -1.8700 -5.8764 -2.0944 40 1 -0.7603 -3.6790 -2.0394 41 1 2.3767 -4.3140 0.7028 42 1 2.0137 -1.8320 3.9926 43 1 3.5123 -2.0900 3.0680 44 1 2.2193 -1.0657 2.3991 45 1 3.1833 -4.6125 3.1594 46 1 1.7681 -4.2682 4.1824 47 1 2.3413 -7.8767 4.6424 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411517438.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:19:38 Heat of formation + Delta-G solvation = 39.129986 kcal Electronic energy + Delta-G solvation = -26731.521766 eV Core-core repulsion = 23390.825580 eV Total energy + Delta-G solvation = -3340.696186 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.151 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.44538 -38.31612 -36.52790 -33.93651 -32.27154 -31.03167 -30.59697 -29.84513 -27.74269 -27.26802 -26.36455 -23.43476 -22.88054 -22.29497 -21.70761 -20.37880 -19.45007 -18.15633 -16.82461 -16.49329 -16.27760 -15.32818 -15.19071 -15.04956 -14.74635 -14.24735 -14.22071 -13.81549 -13.36411 -13.12189 -13.00636 -12.84495 -12.53524 -12.27494 -12.04083 -11.90709 -11.78376 -11.73211 -11.62550 -11.53014 -11.26722 -11.04561 -10.88685 -10.74531 -10.62019 -10.52492 -10.42857 -10.32768 -10.09854 -9.23298 -9.03676 -8.55142 -8.51086 -8.34246 -8.15878 -8.01138 -7.72250 -5.99055 -4.01193 1.26012 1.67338 1.74871 1.97610 2.40021 2.89793 3.30119 3.36822 3.38417 4.09718 4.45966 4.75099 4.88307 5.08105 5.14121 5.28215 5.32519 5.36426 5.41546 5.45846 5.50554 5.59788 5.63397 5.72714 5.74820 5.79997 5.84045 6.00405 6.02846 6.06458 6.18917 6.26191 6.31040 6.34992 6.37564 6.40497 6.61142 6.64330 6.74901 6.76603 6.87065 6.93156 6.99256 7.02114 7.33280 7.53468 7.68127 7.99984 8.05704 8.28943 8.41515 9.05047 9.62933 11.11862 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.012222 B = 0.005019 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.389267 B = 5577.409877 C = 6968.310382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.128 4.128 3 C -0.128 4.128 4 C -0.242 4.242 5 S 0.141 5.859 6 C -0.137 4.137 7 C 0.156 3.844 8 H 0.062 0.938 9 C -0.078 4.078 10 C -0.085 4.085 11 C -0.100 4.100 12 C -0.102 4.102 13 C -0.125 4.125 14 C -0.121 4.121 15 C -0.120 4.120 16 N -0.678 5.678 17 C 0.093 3.907 18 H 0.028 0.972 19 C -0.138 4.138 20 C 0.020 3.980 21 C -0.516 4.516 22 H 0.053 0.947 23 C 0.064 3.936 24 N -0.893 5.893 25 Si 0.878 3.122 26 H -0.266 1.266 27 H -0.291 1.291 28 H -0.280 1.280 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.130 0.870 33 H 0.155 0.845 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.362 0.638 42 H 0.043 0.957 43 H 0.054 0.946 44 H 0.042 0.958 45 H 0.024 0.976 46 H 0.020 0.980 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.555 11.034 -12.784 16.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.141 4.141 3 C -0.160 4.160 4 C -0.378 4.378 5 S 0.407 5.593 6 C -0.256 4.256 7 C 0.043 3.957 8 H 0.079 0.921 9 C -0.116 4.116 10 C -0.086 4.086 11 C -0.118 4.118 12 C -0.120 4.120 13 C -0.144 4.144 14 C -0.139 4.139 15 C -0.138 4.138 16 N -0.315 5.315 17 C -0.016 4.016 18 H 0.046 0.954 19 C -0.196 4.196 20 C -0.017 4.017 21 C -0.554 4.554 22 H 0.071 0.929 23 C -0.138 4.138 24 N -0.532 5.532 25 Si 0.706 3.294 26 H -0.191 1.191 27 H -0.217 1.217 28 H -0.205 1.205 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.147 0.853 33 H 0.173 0.827 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.188 0.812 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.043 0.957 46 H 0.038 0.962 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.394 10.483 -12.542 16.350 hybrid contribution -2.640 -0.501 -0.116 2.690 sum -2.247 9.982 -12.658 16.276 Atomic orbital electron populations 1.20465 0.90434 1.02035 1.02070 1.18741 0.97060 0.91692 1.06575 1.19889 0.92912 0.98710 1.04460 1.25625 0.99666 1.00447 1.12054 1.84379 1.06032 0.97659 1.71253 1.24488 0.95844 0.98203 1.07032 1.19951 0.95875 0.87650 0.92174 0.92054 1.20792 1.01273 0.93014 0.96507 1.19778 0.94246 0.94804 0.99732 1.21056 1.00327 0.91976 0.98479 1.21187 0.95004 0.98006 0.97796 1.21087 0.94790 0.98279 1.00201 1.21013 0.99357 0.92756 1.00813 1.20908 0.94305 0.97333 1.01218 1.60678 1.54534 1.14699 1.01601 1.21634 0.94789 0.96854 0.88358 0.95419 1.21897 1.01165 0.97660 0.98859 1.19285 0.97654 0.90115 0.94643 1.21125 1.29232 0.93103 1.11958 0.92869 1.24930 0.95256 0.98710 0.94887 1.69955 1.39325 1.23623 1.20290 0.86891 0.80361 0.82402 0.79740 1.19091 1.21730 1.20533 0.91599 0.92057 0.91797 0.85259 0.82687 0.90652 0.90173 0.85659 0.86101 0.86775 0.86632 0.86659 0.81216 0.93805 0.92734 0.93902 0.95728 0.96182 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.05 9.59 36.00 0.35 -0.71 16 2 C -0.13 -1.72 5.54 -106.25 -0.59 -2.31 16 3 C -0.13 -1.58 9.98 -41.21 -0.41 -1.99 16 4 C -0.24 -2.95 11.23 29.04 0.33 -2.62 16 5 S 0.14 1.96 23.13 -107.50 -2.49 -0.53 16 6 C -0.14 -2.00 3.28 -36.00 -0.12 -2.12 16 7 C 0.16 2.45 2.15 -68.86 -0.15 2.30 16 8 H 0.06 1.03 5.94 -51.93 -0.31 0.72 16 9 C -0.08 -1.09 4.96 -27.88 -0.14 -1.23 16 10 C -0.09 -1.30 4.83 -104.63 -0.51 -1.81 16 11 C -0.10 -1.66 8.04 -39.58 -0.32 -1.98 16 12 C -0.10 -1.72 9.59 -39.58 -0.38 -2.10 16 13 C -0.13 -1.97 10.05 -39.58 -0.40 -2.36 16 14 C -0.12 -1.75 10.05 -39.58 -0.40 -2.15 16 15 C -0.12 -1.72 9.70 -39.58 -0.38 -2.10 16 16 N -0.68 -12.69 6.02 -100.95 -0.61 -13.29 16 17 C 0.09 1.94 2.59 -67.71 -0.18 1.76 16 18 H 0.03 0.61 7.43 -51.93 -0.39 0.22 16 19 C -0.14 -2.60 9.17 37.16 0.34 -2.25 16 20 C 0.02 0.52 4.57 -27.88 -0.13 0.39 16 21 C -0.52 -13.83 8.12 -34.44 -0.28 -14.11 16 22 H 0.05 1.41 7.49 -52.48 -0.39 1.02 16 23 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 25 Si 0.88 21.02 29.54 -169.99 -5.02 16.00 16 26 H -0.27 -5.88 5.89 56.52 0.33 -5.54 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 30 H 0.06 0.59 8.13 -51.92 -0.42 0.17 16 31 H 0.06 0.73 6.94 -51.93 -0.36 0.37 16 32 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.16 1.52 8.06 -52.48 -0.42 1.09 16 34 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 35 H 0.08 1.11 8.08 -51.93 -0.42 0.69 16 36 H 0.13 2.04 7.55 -52.49 -0.40 1.65 16 37 H 0.12 2.02 7.34 -52.49 -0.39 1.63 16 38 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 39 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 40 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.36 7.27 4.00 -39.29 -0.16 7.12 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.04 0.75 5.96 -51.93 -0.31 0.44 16 45 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 387.24 15.07 5.84 5.84 Total: -1.00 -29.15 387.24 -12.39 -41.54 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -7.39 Total: 9.79 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: -3.46 Total: -33.73 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.13 Total: -38.92 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.49 Total: -0.53 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.15 -12.39 -41.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411517438.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.671 kcal (2) G-P(sol) polarization free energy of solvation -29.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds