Wall clock time and date at job start Sat Apr 11 2020 02:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38206 * 119.61710 * 2 1 4 4 C 1.38646 * 119.16077 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.79046 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.46769 * 90.00112 * 5 4 3 7 7 C 1.34777 * 119.99828 * 179.72341 * 6 5 4 8 8 O 1.21843 * 120.00110 * 0.27998 * 7 6 5 9 9 N 1.33837 * 120.00178 * 180.27958 * 7 6 5 10 10 C 1.32929 * 119.99912 * 180.02562 * 9 7 6 11 11 C 1.41207 * 126.38413 * 0.02562 * 10 9 7 12 12 C 1.34948 * 108.24603 * 180.02562 * 11 10 9 13 13 N 1.36449 * 108.95169 * 359.97438 * 12 11 10 14 14 C 1.46502 * 125.85540 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46695 * 84.97989 * 14 13 12 16 16 H 1.08001 * 120.00153 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99997 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99529 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00003 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47296 * 60.00160 * 19 17 15 21 21 H 1.48498 * 109.46712 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47158 * 299.99893 * 19 17 15 23 23 N 1.37422 * 126.37401 * 179.71585 * 10 9 7 24 24 H 0.96999 * 126.36634 * 359.97075 * 23 10 9 25 25 C 1.38651 * 118.41978 * 0.25410 * 4 3 2 26 26 C 1.38199 * 119.16550 * 359.51970 * 25 4 3 27 27 C 1.50699 * 119.61969 * 180.20956 * 26 25 4 28 28 N 1.31871 * 119.61650 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.46841 * 90.00101 * 1 2 3 30 30 H 1.09003 * 109.46702 * 210.00535 * 1 2 3 31 31 H 1.09001 * 109.46724 * 330.00059 * 1 2 3 32 32 H 1.08001 * 120.41720 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.47210 * 330.00470 * 5 4 3 34 34 H 1.08994 * 109.47121 * 210.00439 * 5 4 3 35 35 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 36 36 H 1.08001 * 125.87524 * 359.97050 * 11 10 9 37 37 H 1.08001 * 125.52784 * 179.97438 * 12 11 10 38 38 H 1.09000 * 109.47077 * 204.97747 * 14 13 12 39 39 H 1.08996 * 109.47479 * 324.98410 * 14 13 12 40 40 H 0.97003 * 119.99760 * 179.97438 * 18 17 15 41 41 H 1.08010 * 120.41894 * 179.72320 * 25 4 3 42 42 H 1.08999 * 109.47400 * 270.27057 * 27 26 25 43 43 H 1.08990 * 109.47494 * 30.27831 * 27 26 25 44 44 H 1.09008 * 109.47017 * 150.27947 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2015 0.0000 4 6 3.5765 1.1904 0.0005 5 6 4.3582 2.4788 0.0000 6 7 4.6109 2.8972 1.3810 7 6 5.3030 4.0272 1.6269 8 8 5.7140 4.7036 0.7005 9 7 5.5388 4.4065 2.8885 10 6 6.2209 5.5214 3.1309 11 6 6.7559 6.4026 2.1660 12 6 7.3756 7.4119 2.8129 13 7 7.2592 7.2137 4.1579 14 6 7.7978 8.0870 5.2037 15 6 6.8215 9.2013 5.4795 16 1 5.8926 9.2536 4.9311 17 6 7.1137 10.1536 6.4329 18 7 8.2442 10.0890 7.1019 19 14 5.9032 11.5345 6.7754 20 1 4.6109 10.9593 7.2273 21 1 6.4487 12.4190 7.8362 22 1 5.6877 12.3227 5.5354 23 7 6.5317 6.0341 4.3675 24 1 6.2938 5.6499 5.2258 25 6 4.2266 -0.0342 -0.0043 26 6 3.4766 -1.1949 0.0006 27 6 4.1727 -2.5315 0.0001 28 7 2.1587 -1.1464 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6506 2.1371 0.0004 33 1 3.7859 3.2508 -0.5145 34 1 5.3077 2.3275 -0.5134 35 1 4.2840 2.3586 2.1185 36 1 6.6825 6.2881 1.0945 37 1 7.8817 8.2419 2.3424 38 1 7.9559 7.5087 6.1140 39 1 8.7464 8.5089 4.8718 40 1 8.4499 10.7592 7.7723 41 1 5.3057 -0.0804 -0.0086 42 1 4.3408 -2.8533 -1.0276 43 1 5.1296 -2.4430 0.5143 44 1 3.5509 -3.2652 0.5133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421067084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:19:46 Heat of formation + Delta-G solvation = 78.883633 kcal Electronic energy + Delta-G solvation = -25928.310950 eV Core-core repulsion = 22075.338148 eV Total energy + Delta-G solvation = -3852.972802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.25189 -41.47615 -40.23040 -36.67504 -35.78561 -34.65306 -34.57045 -33.45318 -32.48193 -32.13854 -29.96824 -28.63988 -27.71665 -27.41938 -24.89030 -23.22082 -22.83728 -22.66577 -21.83418 -21.19175 -19.03460 -18.65710 -17.76622 -17.69774 -17.19792 -16.91301 -16.60608 -16.39823 -15.89645 -15.74870 -15.64472 -15.53800 -15.12264 -14.59150 -14.39714 -14.20709 -14.11956 -14.05672 -13.80184 -13.71190 -13.64346 -13.09783 -13.05043 -12.91642 -12.77028 -12.72093 -12.49487 -12.29973 -12.08328 -11.33167 -11.21109 -10.76116 -10.71458 -10.49191 -10.49170 -9.98046 -9.91084 -9.72441 -8.53822 -8.19827 -6.54469 0.08978 0.11443 0.32709 0.63421 1.40421 1.43059 1.49989 1.69206 2.29215 2.34932 2.77327 2.95267 3.08502 3.14028 3.27232 3.43590 3.67644 3.94593 4.09844 4.11911 4.31074 4.37194 4.43964 4.50976 4.59440 4.62569 4.63137 4.75604 4.80130 4.81797 4.83976 4.88203 5.00131 5.10934 5.21026 5.23367 5.26568 5.32104 5.52425 5.67826 5.72477 5.76591 5.95238 6.14821 6.36157 6.60477 6.89296 6.97657 7.01158 7.19197 8.11137 8.67446 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.023180 B = 0.001839 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.623619 B =15223.129093 C =15714.791160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.119 3.881 3 C -0.166 4.166 4 C -0.053 4.053 5 C 0.186 3.814 6 N -0.715 5.715 7 C 0.675 3.325 8 O -0.658 6.658 9 N -0.723 5.723 10 C 0.472 3.528 11 C -0.346 4.346 12 C 0.177 3.823 13 N -0.350 5.350 14 C 0.268 3.732 15 C -0.566 4.566 16 H 0.060 0.940 17 C 0.030 3.970 18 N -0.913 5.913 19 Si 0.963 3.037 20 H -0.276 1.276 21 H -0.280 1.280 22 H -0.268 1.268 23 N -0.467 5.467 24 H 0.451 0.549 25 C -0.165 4.165 26 C 0.119 3.881 27 C -0.101 4.101 28 N -0.506 5.506 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.147 0.853 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.403 0.597 36 H 0.174 0.826 37 H 0.223 0.777 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.274 0.726 41 H 0.149 0.851 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.562 -16.962 -11.423 21.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.018 4.018 3 C -0.186 4.186 4 C -0.062 4.062 5 C 0.061 3.939 6 N -0.369 5.369 7 C 0.374 3.626 8 O -0.542 6.542 9 N -0.488 5.488 10 C 0.218 3.782 11 C -0.379 4.379 12 C 0.033 3.967 13 N -0.136 5.136 14 C 0.151 3.849 15 C -0.604 4.604 16 H 0.078 0.922 17 C -0.173 4.173 18 N -0.550 5.550 19 Si 0.788 3.212 20 H -0.202 1.202 21 H -0.205 1.205 22 H -0.193 1.193 23 N -0.190 5.190 24 H 0.300 0.700 25 C -0.185 4.185 26 C -0.018 4.018 27 C -0.158 4.158 28 N -0.218 5.218 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.165 0.835 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.238 0.762 36 H 0.191 0.809 37 H 0.240 0.760 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.166 0.834 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.857 -17.572 -11.022 22.181 hybrid contribution -0.015 1.584 0.640 1.708 sum -7.872 -15.989 -10.382 20.625 Atomic orbital electron populations 1.20784 0.86842 1.04217 1.04010 1.21719 0.98370 0.87783 0.93942 1.22071 0.94002 1.00134 1.02378 1.20273 0.94148 0.94668 0.97081 1.19905 0.98840 0.92044 0.83062 1.44593 1.59258 1.25131 1.07919 1.16868 0.78920 0.81682 0.85169 1.90713 1.58139 1.56108 1.49264 1.68084 1.37319 1.20756 1.22688 1.18907 0.86466 0.89091 0.83688 1.22298 1.14333 0.99377 1.01844 1.23338 0.94171 0.98451 0.80720 1.47856 1.44774 1.13161 1.07770 1.19729 0.94571 0.86271 0.84348 1.21594 1.05428 1.10790 1.22608 0.92219 1.25598 0.96981 0.99896 0.94795 1.69955 1.23985 1.36581 1.24516 0.85518 0.78748 0.78711 0.78232 1.20160 1.20527 1.19289 1.44425 1.50443 1.16029 1.08117 0.70021 1.22074 1.02196 0.91897 1.02316 1.21733 0.89246 0.96926 0.93906 1.20784 1.00095 0.90925 1.04026 1.67415 1.10151 1.30187 1.14042 0.89251 0.90510 0.89204 0.83519 0.91233 0.91076 0.76204 0.80920 0.76042 0.93885 0.91028 0.91732 0.83369 0.89239 0.89112 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 10.17 71.24 0.72 -0.64 16 2 C 0.12 2.36 6.78 42.55 0.29 2.64 16 3 C -0.17 -3.27 9.45 22.36 0.21 -3.06 16 4 C -0.05 -1.13 5.29 -19.67 -0.10 -1.23 16 5 C 0.19 4.62 5.85 85.63 0.50 5.12 16 6 N -0.71 -21.50 5.55 -482.82 -2.68 -24.19 16 7 C 0.67 26.17 8.47 179.35 1.52 27.69 16 8 O -0.66 -28.36 13.26 -4.81 -0.06 -28.43 16 9 N -0.72 -28.46 10.59 -322.54 -3.42 -31.87 16 10 C 0.47 18.17 8.07 133.95 1.08 19.25 16 11 C -0.35 -12.70 9.52 22.24 0.21 -12.49 16 12 C 0.18 5.70 11.45 83.22 0.95 6.65 16 13 N -0.35 -12.52 3.63 -350.85 -1.28 -13.80 16 14 C 0.27 10.84 6.19 85.63 0.53 11.37 16 15 C -0.57 -26.23 9.39 25.60 0.24 -25.99 16 16 H 0.06 2.85 7.81 -2.91 -0.02 2.82 16 17 C 0.03 1.41 5.46 84.66 0.46 1.88 16 18 N -0.91 -45.52 13.29 21.45 0.28 -45.24 16 19 Si 0.96 38.60 29.54 68.60 2.03 40.62 16 20 H -0.28 -11.11 7.11 99.48 0.71 -10.41 16 21 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 23 N -0.47 -16.37 7.38 -54.79 -0.40 -16.77 16 24 H 0.45 14.04 8.96 -213.28 -1.91 12.13 16 25 C -0.16 -3.19 9.45 22.36 0.21 -2.98 16 26 C 0.12 2.33 6.78 42.54 0.29 2.62 16 27 C -0.10 -1.32 10.17 71.24 0.72 -0.59 16 28 N -0.51 -11.17 10.19 -172.07 -1.75 -12.92 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 0.94 8.08 -2.39 -0.02 0.92 16 32 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 33 H 0.07 1.79 8.10 -2.38 -0.02 1.77 16 34 H 0.07 1.81 8.10 -2.39 -0.02 1.79 16 35 H 0.40 11.16 8.56 -92.71 -0.79 10.36 16 36 H 0.17 6.79 5.77 -2.91 -0.02 6.77 16 37 H 0.22 5.29 8.06 -2.91 -0.02 5.26 16 38 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 40 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 41 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 42 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.09 0.90 8.08 -2.39 -0.02 0.88 16 44 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -63.39 382.04 -1.10 -64.49 By element: Atomic # 1 Polarization: 39.51 SS G_CDS: -1.66 Total: 37.85 kcal Atomic # 6 Polarization: 22.41 SS G_CDS: 7.84 Total: 30.25 kcal Atomic # 7 Polarization: -135.54 SS G_CDS: -9.24 Total: -144.79 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.06 Total: -28.43 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.62 kcal Total: -63.39 -1.10 -64.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421067084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.375 kcal (2) G-P(sol) polarization free energy of solvation -63.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds