Wall clock time and date at job start Sat Apr 11 2020 02:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38303 * 119.96567 * 2 1 4 4 C 1.38260 * 120.14660 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.96495 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.46957 * 90.00600 * 5 4 3 7 7 C 1.38132 * 120.06852 * 359.97438 * 4 3 2 8 8 C 1.38860 * 119.92724 * 0.02562 * 7 4 3 9 9 N 1.39879 * 120.07005 * 179.97438 * 8 7 4 10 10 C 1.34776 * 120.00109 * 213.30663 * 9 8 7 11 11 O 1.21850 * 119.99655 * 5.31618 * 10 9 8 12 12 N 1.33815 * 120.00231 * 185.31841 * 10 9 8 13 13 C 1.32931 * 120.00164 * 180.02562 * 12 10 9 14 14 C 1.41208 * 126.37826 * 0.02562 * 13 12 10 15 15 C 1.34954 * 108.24848 * 180.02562 * 14 13 12 16 16 N 1.36463 * 108.94523 * 0.02562 * 15 14 13 17 17 C 1.46504 * 125.85139 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.46863 * 84.97954 * 17 16 15 19 19 H 1.07999 * 120.00338 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99976 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99948 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00358 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46791 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47241 * 119.99882 * 22 20 18 25 25 H 1.48501 * 109.47475 * 240.00532 * 22 20 18 26 26 N 1.37424 * 126.37957 * 179.71174 * 13 12 10 27 27 H 0.97004 * 126.36785 * 359.97438 * 26 13 12 28 28 C 1.38082 * 119.96223 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47308 * 89.99535 * 1 2 3 30 30 H 1.08991 * 109.47692 * 209.99934 * 1 2 3 31 31 H 1.09009 * 109.47223 * 330.00618 * 1 2 3 32 32 H 1.08008 * 119.92650 * 0.28015 * 3 2 1 33 33 H 1.09010 * 109.46830 * 209.99942 * 5 4 3 34 34 H 1.08998 * 109.47481 * 330.00095 * 5 4 3 35 35 H 1.00897 * 111.00564 * 56.04256 * 6 5 4 36 36 H 1.00906 * 111.00116 * 180.02562 * 6 5 4 37 37 H 1.08000 * 120.03564 * 180.02562 * 7 4 3 38 38 H 0.96996 * 120.00180 * 33.30553 * 9 8 7 39 39 H 1.08001 * 125.87749 * 0.02562 * 14 13 12 40 40 H 1.07999 * 125.53308 * 179.97438 * 15 14 13 41 41 H 1.08993 * 109.47090 * 204.97639 * 17 16 15 42 42 H 1.09001 * 109.46898 * 324.97952 * 17 16 15 43 43 H 0.97001 * 119.99952 * 180.02562 * 21 20 18 44 44 H 1.08004 * 120.03889 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2025 0.0005 5 6 4.3290 2.5104 -0.0001 6 7 4.5718 2.9362 1.3847 7 6 4.2763 0.0093 0.0016 8 6 3.5857 -1.1954 0.0016 9 7 4.2873 -2.4055 0.0021 10 6 3.7817 -3.4779 -0.6387 11 8 2.7635 -3.3689 -1.2991 12 7 4.3979 -4.6625 -0.5498 13 6 3.8995 -5.7201 -1.1824 14 6 2.7352 -5.7465 -1.9809 15 6 2.5681 -7.0034 -2.4429 16 7 3.5809 -7.7871 -1.9714 17 6 3.7594 -9.2152 -2.2452 18 6 4.4934 -9.3886 -3.5499 19 1 4.7961 -8.5218 -4.1186 20 6 4.7784 -10.6538 -4.0177 21 7 4.4093 -11.7095 -3.3256 22 14 5.6875 -10.8688 -5.6353 23 1 5.9882 -9.5352 -6.2151 24 1 6.9567 -11.6016 -5.3962 25 1 4.8408 -11.6404 -6.5803 26 7 4.4247 -6.9900 -1.1859 27 1 5.2285 -7.2813 -0.7275 28 6 2.1966 -1.1963 0.0005 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8901 0.5138 32 1 1.6560 2.1325 0.0046 33 1 5.2821 2.3833 -0.5135 34 1 3.7373 3.2676 -0.5146 35 1 5.0632 2.2226 1.9017 36 1 5.0724 3.8119 1.4113 37 1 5.3562 0.0133 0.0024 38 1 5.1377 -2.4728 0.4637 39 1 2.0894 -4.9056 -2.1864 40 1 1.7630 -7.3355 -3.0816 41 1 4.3368 -9.6700 -1.4403 42 1 2.7840 -9.6974 -2.3101 43 1 4.6101 -12.5996 -3.6545 44 1 1.6566 -2.1316 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424418691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:19:50 Heat of formation + Delta-G solvation = 95.162063 kcal Electronic energy + Delta-G solvation = -26365.278811 eV Core-core repulsion = 22513.011895 eV Total energy + Delta-G solvation = -3852.266916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.90264 -40.07179 -38.50696 -35.42996 -34.69421 -34.07836 -33.00984 -31.74137 -31.13216 -30.78305 -29.31231 -26.96650 -26.67866 -25.11449 -23.63877 -22.53819 -21.38256 -20.94313 -20.79595 -19.51932 -17.69309 -17.04618 -16.73269 -16.24945 -16.04450 -15.90149 -15.35693 -15.00536 -14.93646 -14.65683 -14.55492 -14.23376 -13.85361 -13.55827 -13.53827 -13.21431 -12.98821 -12.79310 -12.61998 -12.44555 -12.04419 -12.01766 -11.93367 -11.42660 -11.32460 -11.11564 -11.05560 -10.57198 -10.47806 -9.92995 -9.78522 -9.60962 -9.10269 -9.02272 -8.95826 -8.58396 -8.38317 -7.82130 -6.97248 -6.52924 -4.69136 1.40986 1.46158 1.78707 1.99922 3.02134 3.05694 3.12069 3.16936 3.44931 3.80591 4.03520 4.36945 4.49843 4.57090 4.68432 4.78137 4.84156 5.11980 5.20822 5.24672 5.31445 5.41984 5.47220 5.63358 5.66247 5.68076 5.84660 5.87683 5.99066 6.09481 6.21062 6.46485 6.50997 6.53498 6.56774 6.66858 6.74601 6.80721 6.87386 7.14115 7.25036 7.35583 7.36002 7.47545 7.54210 7.75804 8.13572 8.28177 8.40830 9.01794 9.44517 10.49187 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.025222 B = 0.002007 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.861231 B =13950.105526 C =14395.189356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.070 4.070 3 C -0.127 4.127 4 C -0.067 4.067 5 C 0.105 3.895 6 N -0.846 5.846 7 C -0.159 4.159 8 C 0.187 3.813 9 N -0.670 5.670 10 C 0.684 3.316 11 O -0.613 6.613 12 N -0.711 5.711 13 C 0.486 3.514 14 C -0.333 4.333 15 C 0.164 3.836 16 N -0.342 5.342 17 C 0.254 3.746 18 C -0.558 4.558 19 H 0.070 0.930 20 C 0.070 3.930 21 N -0.886 5.886 22 Si 0.909 3.091 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.278 1.278 26 N -0.468 5.468 27 H 0.445 0.555 28 C -0.121 4.121 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.117 0.883 33 H 0.034 0.966 34 H 0.079 0.921 35 H 0.343 0.657 36 H 0.340 0.660 37 H 0.117 0.883 38 H 0.407 0.593 39 H 0.184 0.816 40 H 0.188 0.812 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.272 0.728 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.144 18.803 6.847 20.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.071 4.071 3 C -0.147 4.147 4 C -0.068 4.068 5 C -0.025 4.025 6 N -0.376 5.376 7 C -0.181 4.181 8 C 0.090 3.910 9 N -0.314 5.314 10 C 0.384 3.616 11 O -0.494 6.494 12 N -0.476 5.476 13 C 0.234 3.766 14 C -0.366 4.366 15 C 0.018 3.982 16 N -0.128 5.128 17 C 0.138 3.862 18 C -0.596 4.596 19 H 0.088 0.912 20 C -0.135 4.135 21 N -0.523 5.523 22 Si 0.736 3.264 23 H -0.194 1.194 24 H -0.205 1.205 25 H -0.204 1.204 26 N -0.190 5.190 27 H 0.292 0.708 28 C -0.142 4.142 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.135 0.865 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.135 0.865 38 H 0.242 0.758 39 H 0.201 0.799 40 H 0.205 0.795 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.787 18.230 6.919 19.697 hybrid contribution 1.972 -0.610 -1.091 2.335 sum -0.815 17.620 5.828 18.577 Atomic orbital electron populations 1.20752 0.91257 1.02432 1.02298 1.19760 0.95967 0.92582 0.98748 1.20704 0.93210 0.97222 1.03565 1.19358 0.93742 0.93366 1.00297 1.20657 0.97874 0.94177 0.89837 1.58705 1.57265 1.08187 1.13413 1.20635 0.99191 0.90887 1.07406 1.17531 0.91319 0.84690 0.97500 1.42334 1.24912 1.08237 1.55947 1.16595 0.82439 0.83622 0.78981 1.90755 1.27771 1.86117 1.44759 1.67984 1.40818 0.97973 1.40873 1.18650 0.87388 0.83548 0.87034 1.22397 1.04370 0.98638 1.11166 1.22838 0.90637 0.90692 0.93995 1.48057 1.17105 1.08398 1.39241 1.20082 1.00324 0.67674 0.98166 1.21451 1.39227 0.93403 1.05566 0.91150 1.24961 0.95174 0.95223 0.98187 1.69907 1.45120 0.98666 1.38579 0.86239 0.79353 0.78655 0.82156 1.19392 1.20514 1.20368 1.44468 1.24104 1.04839 1.45624 0.70767 1.21120 0.92664 0.98678 1.01693 0.91189 0.91586 0.91780 0.86457 0.94793 0.90278 0.84492 0.84715 0.86491 0.75808 0.79887 0.79485 0.93025 0.91287 0.91869 0.84560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 36.01 0.36 -0.79 16 2 C -0.07 -0.92 5.88 -104.66 -0.62 -1.53 16 3 C -0.13 -1.52 9.35 -39.55 -0.37 -1.89 16 4 C -0.07 -0.77 5.39 -104.65 -0.56 -1.33 16 5 C 0.10 0.92 6.91 -4.98 -0.03 0.89 16 6 N -0.85 -6.63 9.61 -11.41 -0.11 -6.74 16 7 C -0.16 -2.01 9.62 -39.39 -0.38 -2.39 16 8 C 0.19 2.83 6.28 -83.71 -0.53 2.30 16 9 N -0.67 -10.68 5.35 -14.41 -0.08 -10.76 16 10 C 0.68 13.23 8.21 -87.77 -0.72 12.51 16 11 O -0.61 -12.91 10.94 5.05 0.06 -12.85 16 12 N -0.71 -13.75 10.59 -15.79 -0.17 -13.91 16 13 C 0.49 9.23 8.07 -155.29 -1.25 7.98 16 14 C -0.33 -6.07 9.52 -39.62 -0.38 -6.45 16 15 C 0.16 2.70 11.45 -16.66 -0.19 2.51 16 16 N -0.34 -6.20 3.64 -62.24 -0.23 -6.43 16 17 C 0.25 5.18 6.19 -5.19 -0.03 5.15 16 18 C -0.56 -13.10 9.39 -34.44 -0.32 -13.42 16 19 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 20 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -22.26 13.29 55.43 0.74 -21.52 16 22 Si 0.91 19.11 29.54 -169.99 -5.02 14.09 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 N -0.47 -8.15 7.38 31.33 0.23 -7.92 16 27 H 0.45 6.81 8.96 -182.55 -1.64 5.17 16 28 C -0.12 -1.87 8.30 -39.39 -0.33 -2.20 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 31 H 0.06 0.55 8.09 -51.92 -0.42 0.13 16 32 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 33 H 0.03 0.27 8.09 -51.92 -0.42 -0.15 16 34 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 35 H 0.34 2.55 8.99 -39.29 -0.35 2.20 16 36 H 0.34 1.92 9.08 -39.29 -0.36 1.56 16 37 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.41 5.53 8.92 -40.82 -0.36 5.16 16 39 H 0.18 3.51 5.77 -52.49 -0.30 3.21 16 40 H 0.19 2.42 8.06 -52.49 -0.42 2.00 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 43 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 44 H 0.14 2.37 6.41 -52.48 -0.34 2.03 16 LS Contribution 376.86 15.07 5.68 5.68 Total: -1.00 -29.39 376.86 -11.46 -40.85 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -7.11 Total: 16.60 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -5.45 Total: 2.92 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: 0.39 Total: -67.28 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.06 Total: -12.85 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.39 -11.46 -40.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424418691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.010 kcal (2) G-P(sol) polarization free energy of solvation -29.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds