Wall clock time and date at job start Sat Apr 11 2020 02:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38303 * 119.96567 * 2 1 4 4 C 1.38260 * 120.14660 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.96495 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.46957 * 90.00600 * 5 4 3 7 7 C 1.38132 * 120.06852 * 359.97438 * 4 3 2 8 8 C 1.38860 * 119.92724 * 0.02562 * 7 4 3 9 9 N 1.39879 * 120.07005 * 179.97438 * 8 7 4 10 10 C 1.34776 * 120.00109 * 213.30663 * 9 8 7 11 11 O 1.21850 * 119.99655 * 5.31618 * 10 9 8 12 12 N 1.33815 * 120.00231 * 185.31841 * 10 9 8 13 13 C 1.32931 * 120.00164 * 180.02562 * 12 10 9 14 14 C 1.41208 * 126.37826 * 0.02562 * 13 12 10 15 15 C 1.34954 * 108.24848 * 180.02562 * 14 13 12 16 16 N 1.36463 * 108.94523 * 0.02562 * 15 14 13 17 17 C 1.46504 * 125.85139 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.46863 * 84.97954 * 17 16 15 19 19 H 1.07999 * 120.00338 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99976 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99948 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00358 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46791 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47241 * 119.99882 * 22 20 18 25 25 H 1.48501 * 109.47475 * 240.00532 * 22 20 18 26 26 N 1.37424 * 126.37957 * 179.71174 * 13 12 10 27 27 H 0.97004 * 126.36785 * 359.97438 * 26 13 12 28 28 C 1.38082 * 119.96223 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47308 * 89.99535 * 1 2 3 30 30 H 1.08991 * 109.47692 * 209.99934 * 1 2 3 31 31 H 1.09009 * 109.47223 * 330.00618 * 1 2 3 32 32 H 1.08008 * 119.92650 * 0.28015 * 3 2 1 33 33 H 1.09010 * 109.46830 * 209.99942 * 5 4 3 34 34 H 1.08998 * 109.47481 * 330.00095 * 5 4 3 35 35 H 1.00897 * 111.00564 * 56.04256 * 6 5 4 36 36 H 1.00906 * 111.00116 * 180.02562 * 6 5 4 37 37 H 1.08000 * 120.03564 * 180.02562 * 7 4 3 38 38 H 0.96996 * 120.00180 * 33.30553 * 9 8 7 39 39 H 1.08001 * 125.87749 * 0.02562 * 14 13 12 40 40 H 1.07999 * 125.53308 * 179.97438 * 15 14 13 41 41 H 1.08993 * 109.47090 * 204.97639 * 17 16 15 42 42 H 1.09001 * 109.46898 * 324.97952 * 17 16 15 43 43 H 0.97001 * 119.99952 * 180.02562 * 21 20 18 44 44 H 1.08004 * 120.03889 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2025 0.0005 5 6 4.3290 2.5104 -0.0001 6 7 4.5718 2.9362 1.3847 7 6 4.2763 0.0093 0.0016 8 6 3.5857 -1.1954 0.0016 9 7 4.2873 -2.4055 0.0021 10 6 3.7817 -3.4779 -0.6387 11 8 2.7635 -3.3689 -1.2991 12 7 4.3979 -4.6625 -0.5498 13 6 3.8995 -5.7201 -1.1824 14 6 2.7352 -5.7465 -1.9809 15 6 2.5681 -7.0034 -2.4429 16 7 3.5809 -7.7871 -1.9714 17 6 3.7594 -9.2152 -2.2452 18 6 4.4934 -9.3886 -3.5499 19 1 4.7961 -8.5218 -4.1186 20 6 4.7784 -10.6538 -4.0177 21 7 4.4093 -11.7095 -3.3256 22 14 5.6875 -10.8688 -5.6353 23 1 5.9882 -9.5352 -6.2151 24 1 6.9567 -11.6016 -5.3962 25 1 4.8408 -11.6404 -6.5803 26 7 4.4247 -6.9900 -1.1859 27 1 5.2285 -7.2813 -0.7275 28 6 2.1966 -1.1963 0.0005 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8901 0.5138 32 1 1.6560 2.1325 0.0046 33 1 5.2821 2.3833 -0.5135 34 1 3.7373 3.2676 -0.5146 35 1 5.0632 2.2226 1.9017 36 1 5.0724 3.8119 1.4113 37 1 5.3562 0.0133 0.0024 38 1 5.1377 -2.4728 0.4637 39 1 2.0894 -4.9056 -2.1864 40 1 1.7630 -7.3355 -3.0816 41 1 4.3368 -9.6700 -1.4403 42 1 2.7840 -9.6974 -2.3101 43 1 4.6101 -12.5996 -3.6545 44 1 1.6566 -2.1316 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424418691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:19:49 Heat of formation + Delta-G solvation = 75.467442 kcal Electronic energy + Delta-G solvation = -26366.132834 eV Core-core repulsion = 22513.011895 eV Total energy + Delta-G solvation = -3853.120939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.33913 -41.26359 -39.73175 -36.51985 -35.83529 -35.50957 -34.63388 -32.73942 -32.54537 -32.24056 -30.43587 -28.38088 -27.83029 -25.93038 -25.19509 -23.94472 -22.76182 -22.21984 -21.82622 -20.76153 -19.13044 -18.74704 -17.97965 -17.54077 -17.13416 -16.85506 -16.65154 -16.52863 -16.05659 -15.98147 -15.72415 -15.55546 -15.09580 -14.63252 -14.44608 -14.41738 -14.35038 -14.21291 -13.89107 -13.67608 -13.32498 -13.16207 -12.91750 -12.81408 -12.76574 -12.35939 -12.30047 -12.07933 -12.01951 -11.29826 -11.24895 -11.01257 -10.78368 -10.53796 -9.99652 -9.67039 -9.42350 -9.00929 -8.54796 -8.23268 -6.56535 0.15348 0.44864 0.55901 0.56714 1.36351 1.41986 1.51207 1.64281 2.17632 2.30878 2.75499 2.91213 2.98357 3.14511 3.78163 3.89769 3.90382 3.97971 4.19959 4.27764 4.37333 4.43392 4.47371 4.53309 4.64130 4.67962 4.74570 4.85020 4.85756 4.94785 4.98393 5.02650 5.23568 5.27524 5.47439 5.50930 5.56494 5.69852 5.72379 5.75848 5.91180 6.08696 6.19550 6.25728 6.31725 6.57390 6.64143 6.82013 6.85195 7.17362 7.99970 8.65748 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.025222 B = 0.002007 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.861231 B =13950.105526 C =14395.189356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.076 4.076 3 C -0.127 4.127 4 C -0.063 4.063 5 C 0.108 3.892 6 N -0.852 5.852 7 C -0.156 4.156 8 C 0.160 3.840 9 N -0.661 5.661 10 C 0.673 3.327 11 O -0.637 6.637 12 N -0.719 5.719 13 C 0.472 3.528 14 C -0.345 4.345 15 C 0.179 3.821 16 N -0.347 5.347 17 C 0.267 3.733 18 C -0.565 4.565 19 H 0.059 0.941 20 C 0.030 3.970 21 N -0.912 5.912 22 Si 0.964 3.036 23 H -0.273 1.273 24 H -0.279 1.279 25 H -0.274 1.274 26 N -0.463 5.463 27 H 0.453 0.547 28 C -0.146 4.146 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.140 0.860 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.345 0.655 36 H 0.354 0.646 37 H 0.136 0.864 38 H 0.416 0.584 39 H 0.174 0.826 40 H 0.224 0.776 41 H 0.045 0.955 42 H 0.073 0.927 43 H 0.274 0.726 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.913 20.553 6.544 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.077 4.077 3 C -0.146 4.146 4 C -0.065 4.065 5 C -0.022 4.022 6 N -0.383 5.383 7 C -0.178 4.178 8 C 0.064 3.936 9 N -0.307 5.307 10 C 0.372 3.628 11 O -0.520 6.520 12 N -0.485 5.485 13 C 0.219 3.781 14 C -0.377 4.377 15 C 0.035 3.965 16 N -0.133 5.133 17 C 0.150 3.850 18 C -0.603 4.603 19 H 0.077 0.923 20 C -0.173 4.173 21 N -0.550 5.550 22 Si 0.789 3.211 23 H -0.198 1.198 24 H -0.205 1.205 25 H -0.199 1.199 26 N -0.186 5.186 27 H 0.301 0.699 28 C -0.167 4.167 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.158 0.842 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.157 0.843 36 H 0.169 0.831 37 H 0.154 0.846 38 H 0.253 0.747 39 H 0.191 0.809 40 H 0.241 0.759 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.536 20.019 6.643 21.244 hybrid contribution 1.881 -1.040 -0.953 2.351 sum -0.655 18.979 5.689 19.824 Atomic orbital electron populations 1.20794 0.89625 1.03332 1.02846 1.20050 0.97345 0.92187 0.98080 1.21026 0.93670 0.97524 1.02423 1.19748 0.93923 0.94287 0.98495 1.20650 0.98154 0.92772 0.90635 1.58670 1.57879 1.09004 1.12757 1.20838 1.00169 0.90215 1.06548 1.17808 0.91466 0.85080 0.99259 1.42197 1.25155 1.07900 1.55411 1.16875 0.82375 0.84279 0.79247 1.90731 1.28764 1.86579 1.45947 1.68028 1.41035 0.98180 1.41211 1.18855 0.87956 0.83878 0.87402 1.22301 1.04399 0.99129 1.11919 1.23364 0.90487 0.89656 0.93025 1.47910 1.17625 1.08049 1.39667 1.19770 0.99936 0.68675 0.96641 1.21637 1.39168 0.92986 1.06506 0.92260 1.25590 0.95874 0.95157 1.00633 1.69966 1.46227 0.99002 1.39826 0.85409 0.78334 0.78167 0.79202 1.19805 1.20456 1.19894 1.44430 1.24308 1.04316 1.45575 0.69858 1.21043 0.93119 0.98555 1.03996 0.90730 0.92072 0.89498 0.84191 0.93768 0.89227 0.84272 0.83138 0.84619 0.74733 0.80928 0.75919 0.93733 0.90910 0.91704 0.87438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.20 10.01 71.24 0.71 -1.49 16 2 C -0.08 -1.96 5.88 -19.89 -0.12 -2.08 16 3 C -0.13 -2.80 9.35 22.29 0.21 -2.59 16 4 C -0.06 -1.34 5.39 -19.88 -0.11 -1.44 16 5 C 0.11 1.58 6.91 85.56 0.59 2.18 16 6 N -0.85 -11.01 9.61 -190.00 -1.83 -12.84 16 7 C -0.16 -3.76 9.62 22.39 0.22 -3.55 16 8 C 0.16 4.91 6.28 38.17 0.24 5.15 16 9 N -0.66 -21.61 5.35 -317.66 -1.70 -23.31 16 10 C 0.67 26.88 8.21 179.35 1.47 28.35 16 11 O -0.64 -27.99 10.94 -4.83 -0.05 -28.04 16 12 N -0.72 -28.38 10.59 -322.56 -3.42 -31.80 16 13 C 0.47 18.12 8.07 133.95 1.08 19.20 16 14 C -0.35 -12.68 9.52 22.24 0.21 -12.46 16 15 C 0.18 5.74 11.45 83.22 0.95 6.69 16 16 N -0.35 -12.33 3.64 -350.83 -1.28 -13.61 16 17 C 0.27 10.72 6.19 85.63 0.53 11.25 16 18 C -0.56 -26.09 9.39 25.60 0.24 -25.85 16 19 H 0.06 2.84 7.81 -2.91 -0.02 2.82 16 20 C 0.03 1.42 5.46 84.65 0.46 1.88 16 21 N -0.91 -45.32 13.29 21.45 0.28 -45.04 16 22 Si 0.96 38.62 29.54 68.60 2.03 40.65 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 25 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 26 N -0.46 -16.09 7.38 -54.79 -0.40 -16.50 16 27 H 0.45 13.85 8.96 -213.27 -1.91 11.94 16 28 C -0.15 -4.70 8.30 22.39 0.19 -4.52 16 29 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 1.27 8.08 -2.39 -0.02 1.25 16 31 H 0.09 1.33 8.09 -2.38 -0.02 1.31 16 32 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.04 0.58 8.09 -2.38 -0.02 0.56 16 34 H 0.09 1.16 8.08 -2.39 -0.02 1.14 16 35 H 0.34 4.31 8.99 -89.70 -0.81 3.50 16 36 H 0.35 2.98 9.08 -89.69 -0.81 2.17 16 37 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.42 11.46 8.92 -92.71 -0.83 10.63 16 39 H 0.17 6.82 5.77 -2.91 -0.02 6.81 16 40 H 0.22 5.29 8.06 -2.91 -0.02 5.26 16 41 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 43 H 0.27 12.91 8.31 -92.71 -0.77 12.14 16 44 H 0.11 4.03 6.41 -2.91 -0.02 4.01 16 Total: -1.00 -62.98 376.86 -2.75 -65.73 By element: Atomic # 1 Polarization: 47.31 SS G_CDS: -3.27 Total: 44.03 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: 6.88 Total: 20.72 kcal Atomic # 7 Polarization: -134.75 SS G_CDS: -8.34 Total: -143.09 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.05 Total: -28.04 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -62.98 -2.75 -65.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424418691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.199 kcal (2) G-P(sol) polarization free energy of solvation -62.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds