Wall clock time and date at job start Sat Apr 11 2020 02:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39952 * 125.81537 * 2 1 4 4 C 1.35279 * 107.97040 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.19371 * 179.97438 * 4 3 2 6 6 N 1.35838 * 107.61195 * 0.26057 * 4 3 2 7 7 C 1.39818 * 126.10328 * 179.74044 * 6 4 3 8 8 C 1.38944 * 119.68743 * 154.72868 * 7 6 4 9 9 C 1.38423 * 119.10306 * 179.72791 * 8 7 6 10 10 C 1.38802 * 118.48236 * 0.53229 * 9 8 7 11 11 C 1.50705 * 120.34972 * 179.70778 * 10 9 8 12 12 N 1.46497 * 109.47060 * 270.01798 * 11 10 9 13 13 C 1.34772 * 119.99940 * 180.02562 * 12 11 10 14 14 O 1.21580 * 120.00173 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99982 * 179.97438 * 13 12 11 16 16 C 1.46497 * 120.00179 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47343 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00425 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00030 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00137 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99997 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47397 * 89.99230 * 21 19 17 23 23 H 1.48496 * 109.47413 * 209.99618 * 21 19 17 24 24 H 1.48503 * 109.47180 * 329.99517 * 21 19 17 25 25 C 1.38122 * 119.29329 * 359.72589 * 10 9 8 26 26 N 1.31897 * 120.84116 * 0.02562 * 25 10 9 27 27 N 1.30813 * 125.81579 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47003 * 90.00317 * 1 2 3 29 29 H 1.09002 * 109.46960 * 210.00599 * 1 2 3 30 30 H 1.09004 * 109.46789 * 330.00676 * 1 2 3 31 31 H 1.08004 * 126.01842 * 0.03182 * 3 2 1 32 32 H 1.09002 * 109.47152 * 90.02378 * 5 4 3 33 33 H 1.09001 * 109.46980 * 330.02479 * 5 4 3 34 34 H 1.09004 * 109.47113 * 210.02460 * 5 4 3 35 35 H 1.08001 * 120.45120 * 359.97244 * 8 7 6 36 36 H 1.07999 * 120.75610 * 180.23461 * 9 8 7 37 37 H 1.09001 * 109.47043 * 30.01983 * 11 10 9 38 38 H 1.09002 * 109.46437 * 150.01748 * 11 10 9 39 39 H 0.97004 * 119.99636 * 0.02562 * 12 11 10 40 40 H 0.97011 * 120.00016 * 0.02562 * 15 13 12 41 41 H 1.09000 * 109.47359 * 299.99925 * 16 15 13 42 42 H 1.09001 * 109.47604 * 59.99945 * 16 15 13 43 43 H 0.96998 * 120.00366 * 180.02562 * 20 19 17 44 44 H 1.08002 * 119.57441 * 179.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3260 1.1349 0.0000 4 6 3.6137 0.7203 -0.0006 5 6 4.8335 1.6053 -0.0013 6 7 3.6082 -0.6380 -0.0068 7 6 4.7345 -1.4665 -0.0146 8 6 4.6439 -2.7559 0.4951 9 6 5.7650 -3.5676 0.4762 10 6 6.9451 -3.0545 -0.0440 11 6 8.1926 -3.8993 -0.0791 12 7 8.9466 -3.7085 1.1623 13 6 10.1061 -4.3680 1.3546 14 8 10.5265 -5.1210 0.4976 15 7 10.8001 -4.1921 2.4965 16 6 12.0607 -4.9086 2.7053 17 6 12.6315 -4.5394 4.0502 18 1 12.1080 -3.8406 4.6858 19 6 13.8229 -5.0930 4.4690 20 7 14.4608 -5.9435 3.6950 21 14 14.5308 -4.6348 6.1358 22 1 14.0187 -5.5736 7.1662 23 1 16.0126 -4.7171 6.0839 24 1 14.1239 -3.2493 6.4826 25 6 6.9639 -1.7613 -0.5288 26 7 5.8779 -1.0132 -0.5020 27 7 2.2725 -1.0608 -0.0005 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 1.9893 2.1611 0.0005 32 1 5.1284 1.8185 1.0262 33 1 4.6046 2.5391 -0.5148 34 1 5.6499 1.0984 -0.5159 35 1 3.7104 -3.1212 0.8969 36 1 5.7236 -4.5755 0.8619 37 1 7.9176 -4.9493 -0.1795 38 1 8.8086 -3.6022 -0.9278 39 1 8.6113 -3.1074 1.8459 40 1 10.4648 -3.5910 3.1801 41 1 11.8782 -5.9827 2.6710 42 1 12.7682 -4.6351 1.9225 43 1 15.2987 -6.3333 3.9897 44 1 7.8798 -1.3573 -0.9342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426434284.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:19:54 Heat of formation + Delta-G solvation = 83.863626 kcal Electronic energy + Delta-G solvation = -26008.118051 eV Core-core repulsion = 22155.361198 eV Total energy + Delta-G solvation = -3852.756853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.02163 -40.51392 -39.13712 -35.63826 -34.23892 -33.89850 -33.08023 -32.54167 -32.15939 -30.91304 -28.79015 -27.41176 -27.18692 -25.50660 -24.29042 -22.85613 -22.10440 -20.74369 -20.25291 -20.17572 -18.24268 -18.04111 -17.03131 -16.46637 -15.95179 -15.77498 -15.21771 -15.16758 -14.83399 -14.69079 -14.36520 -14.19958 -13.99374 -13.70142 -13.56614 -13.48514 -13.34577 -13.13516 -12.97510 -12.75755 -12.69173 -12.29278 -12.02906 -11.94871 -11.70007 -11.02479 -10.97058 -10.89328 -10.51377 -10.31451 -10.27330 -9.92768 -9.50669 -9.38269 -9.20963 -8.86098 -8.70876 -8.60497 -7.79226 -6.16334 -4.22970 0.24583 0.77664 1.57298 1.78760 2.32912 3.13466 3.24033 3.30309 3.32569 3.56982 3.89444 3.90674 4.05329 4.28550 4.32140 4.34037 4.53009 4.53361 4.66234 4.82746 5.03830 5.09668 5.18040 5.18600 5.19854 5.25547 5.26373 5.31310 5.44721 5.46898 5.56622 5.66401 5.68464 5.86242 5.93916 6.05775 6.22848 6.72639 6.76300 7.05115 7.08275 7.48415 7.50631 7.53184 7.55638 7.87715 8.02166 8.74633 8.90588 9.29614 9.45996 10.93842 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.021942 B = 0.001835 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.804457 B =15255.866406 C =15755.239263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.089 3.911 3 C -0.270 4.270 4 C 0.115 3.885 5 C -0.107 4.107 6 N -0.327 5.327 7 C 0.370 3.630 8 C -0.161 4.161 9 C -0.033 4.033 10 C -0.161 4.161 11 C 0.188 3.812 12 N -0.756 5.756 13 C 0.693 3.307 14 O -0.599 6.599 15 N -0.728 5.728 16 C 0.267 3.733 17 C -0.543 4.543 18 H 0.062 0.938 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.150 3.850 26 N -0.501 5.501 27 N -0.287 5.287 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.154 0.846 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.392 0.608 40 H 0.386 0.614 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.266 0.734 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.498 14.574 -7.534 31.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.079 4.079 3 C -0.298 4.298 4 C -0.008 4.008 5 C -0.165 4.165 6 N -0.105 5.105 7 C 0.143 3.857 8 C -0.184 4.184 9 C -0.060 4.060 10 C -0.164 4.164 11 C 0.063 3.937 12 N -0.414 5.414 13 C 0.393 3.607 14 O -0.478 6.478 15 N -0.380 5.380 16 C 0.145 3.855 17 C -0.581 4.581 18 H 0.080 0.920 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.731 3.269 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.009 4.009 26 N -0.214 5.214 27 N -0.107 5.107 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.172 0.828 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.164 0.836 36 H 0.166 0.834 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.225 0.775 40 H 0.218 0.782 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.075 0.925 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -25.730 13.265 -8.661 30.216 hybrid contribution 0.018 0.802 1.833 2.001 sum -25.712 14.067 -6.828 30.093 Atomic orbital electron populations 1.20239 0.85978 1.03668 1.03315 1.22556 0.97229 0.90676 0.97434 1.21248 0.90836 1.00045 1.17665 1.21530 0.97725 0.83614 0.97947 1.20758 0.94251 0.97802 1.03686 1.45616 1.03648 1.03707 1.57554 1.17731 0.84601 0.88148 0.95199 1.21670 1.01019 0.93217 1.02444 1.21558 0.90741 1.00113 0.93554 1.21043 0.96618 0.96533 1.02186 1.19786 0.87771 0.98359 0.87772 1.45195 1.24340 1.51080 1.20771 1.16126 0.79923 0.81007 0.83629 1.90883 1.70430 1.41774 1.44758 1.45729 1.26092 1.49092 1.17098 1.18993 0.78155 0.91928 0.96375 1.21225 1.07138 1.27671 1.02085 0.91965 1.24941 0.96505 0.94772 0.97784 1.69973 1.16569 1.28949 1.36734 0.86415 0.78253 0.78822 0.83390 1.20497 1.20998 1.19802 1.22589 0.94938 0.89469 0.93873 1.66986 0.98717 1.38253 1.17424 1.77439 0.84504 1.22369 1.26354 0.90138 0.90613 0.90048 0.82836 0.90441 0.89882 0.87810 0.83599 0.83376 0.90582 0.90438 0.77515 0.78150 0.95706 0.95665 0.92451 0.81179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.44 36.01 0.38 -0.03 16 2 C 0.09 0.85 7.21 -82.38 -0.59 0.25 16 3 C -0.27 -2.42 10.65 -39.99 -0.43 -2.85 16 4 C 0.11 1.17 6.89 -81.87 -0.56 0.61 16 5 C -0.11 -0.84 9.98 36.01 0.36 -0.48 16 6 N -0.33 -3.88 3.78 -8.38 -0.03 -3.91 16 7 C 0.37 4.21 7.36 -154.37 -1.14 3.08 16 8 C -0.16 -1.61 9.74 -39.25 -0.38 -1.99 16 9 C -0.03 -0.29 9.85 -39.30 -0.39 -0.68 16 10 C -0.16 -1.49 5.27 -104.45 -0.55 -2.04 16 11 C 0.19 2.15 5.82 -5.19 -0.03 2.12 16 12 N -0.76 -10.35 5.55 -66.42 -0.37 -10.72 16 13 C 0.69 13.70 8.57 -86.92 -0.74 12.96 16 14 O -0.60 -14.49 16.34 5.30 0.09 -14.40 16 15 N -0.73 -15.20 5.55 -66.42 -0.37 -15.56 16 16 C 0.27 7.05 5.43 -5.20 -0.03 7.03 16 17 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 16 18 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.88 -25.97 13.29 55.43 0.74 -25.23 16 21 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 25 C 0.15 1.38 10.85 -17.57 -0.19 1.19 16 26 N -0.50 -5.34 7.65 -12.29 -0.09 -5.43 16 27 N -0.29 -3.40 12.10 33.69 0.41 -2.99 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.92 5.85 -51.93 -0.30 0.62 16 35 H 0.15 1.38 7.91 -52.49 -0.42 0.96 16 36 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 38 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 39 H 0.39 4.41 8.48 -40.82 -0.35 4.07 16 40 H 0.39 6.88 8.34 -40.82 -0.34 6.54 16 41 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.17 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 381.74 15.07 5.75 5.75 Total: -1.00 -35.12 381.74 -9.62 -44.75 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.01 Total: 6.17 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -4.71 Total: 5.86 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: 0.28 Total: -63.86 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.09 Total: -14.40 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.12 -9.62 -44.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426434284.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.609 kcal (2) G-P(sol) polarization free energy of solvation -35.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds