Wall clock time and date at job start Sat Apr 11 2020 02:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99884 * 2 1 4 4 N 1.46909 * 109.46817 * 124.08492 * 3 2 1 5 5 C 1.46897 * 111.00030 * 62.53264 * 4 3 2 6 6 C 1.50694 * 109.47034 * 66.05054 * 5 4 3 7 7 H 1.08006 * 120.00267 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00159 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99748 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00084 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46968 * 60.00074 * 10 8 6 12 12 H 1.48499 * 109.47087 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47107 * 299.99816 * 10 8 6 14 14 C 1.46902 * 110.99522 * 298.57988 * 4 3 2 15 15 C 1.50697 * 109.47374 * 288.43066 * 14 4 3 16 16 C 1.34717 * 125.66528 * 95.20648 * 15 14 4 17 17 C 1.40945 * 107.03281 * 180.02562 * 16 15 14 18 18 C 1.35946 * 106.74394 * 359.97438 * 17 16 15 19 19 C 1.47789 * 125.93709 * 180.02562 * 18 17 16 20 20 C 1.39609 * 120.12177 * 309.72566 * 19 18 17 21 21 C 1.37903 * 119.87925 * 179.72049 * 20 19 18 22 22 C 1.38595 * 120.12090 * 0.57740 * 21 20 19 23 23 F 1.35104 * 119.87889 * 179.71774 * 22 21 20 24 24 C 1.38558 * 120.24379 * 359.69653 * 22 21 20 25 25 C 1.37936 * 120.11917 * 0.02562 * 24 22 21 26 26 C 1.50703 * 120.06041 * 180.02562 * 25 24 22 27 27 O 1.34325 * 125.66385 * 274.90388 * 15 14 4 28 28 H 1.07991 * 120.00076 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99619 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.00095 * 180.02562 * 2 1 3 31 31 H 1.08995 * 109.47538 * 4.08579 * 3 2 1 32 32 H 1.08997 * 109.47013 * 244.07683 * 3 2 1 33 33 H 1.09004 * 109.47102 * 186.04950 * 5 4 3 34 34 H 1.08999 * 109.47341 * 306.04705 * 5 4 3 35 35 H 0.97005 * 120.00111 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.47269 * 48.43455 * 14 4 3 37 37 H 1.08998 * 109.46824 * 168.43035 * 14 4 3 38 38 H 1.08000 * 126.48412 * 0.02562 * 16 15 14 39 39 H 1.08001 * 126.63095 * 179.97438 * 17 16 15 40 40 H 1.07999 * 120.06064 * 0.02562 * 20 19 18 41 41 H 1.08005 * 119.93790 * 180.27040 * 21 20 19 42 42 H 1.08004 * 119.94035 * 180.02562 * 24 22 21 43 43 H 1.09002 * 109.47258 * 269.97508 * 26 25 24 44 44 H 1.08997 * 109.47512 * 29.97242 * 26 25 24 45 45 H 1.09001 * 109.47419 * 149.98219 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9806 1.3411 1.1471 5 6 3.9861 0.2745 1.0509 6 6 4.8821 0.5342 -0.1325 7 1 4.7205 1.4044 -0.7516 8 6 5.9076 -0.3395 -0.4258 9 7 6.1041 -1.3993 0.3277 10 14 7.0179 -0.0179 -1.8932 11 1 7.6993 1.2903 -1.7209 12 1 8.0345 -1.0960 -1.9904 13 1 6.2029 0.0080 -3.1342 14 6 2.2421 1.2557 2.4142 15 6 1.5066 2.5487 2.6552 16 6 0.2211 2.7926 2.3345 17 6 -0.0594 4.1157 2.7311 18 6 1.0823 4.6110 3.2781 19 6 1.2596 5.9687 3.8343 20 6 0.8769 7.0862 3.0901 21 6 1.0392 8.3505 3.6164 22 6 1.5922 8.5135 4.8767 23 9 1.7543 9.7547 5.3852 24 6 1.9791 7.4083 5.6174 25 6 1.8160 6.1388 5.1031 26 6 2.2367 4.9376 5.9101 27 8 2.0222 3.6475 3.2305 28 1 -0.5400 -0.9352 -0.0004 29 1 -0.5400 0.9354 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3575 2.1323 0.0732 32 1 2.6342 1.3951 -0.9242 33 1 4.5840 0.2555 1.9621 34 1 3.4862 -0.6858 0.9244 35 1 6.8258 -2.0139 0.1217 36 1 1.5268 0.4348 2.3633 37 1 2.9416 1.0779 3.2310 38 1 -0.4648 2.1045 1.8629 39 1 -0.9997 4.6356 2.6217 40 1 0.4499 6.9605 2.1061 41 1 0.7394 9.2155 3.0432 42 1 2.4091 7.5410 6.5992 43 1 3.2760 4.6961 5.6874 44 1 2.1350 5.1597 6.9723 45 1 1.6035 4.0880 5.6542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430111711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:20:00 Heat of formation + Delta-G solvation = 16.651242 kcal Electronic energy + Delta-G solvation = -27137.469338 eV Core-core repulsion = 23229.585224 eV Total energy + Delta-G solvation = -3907.884114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.15017 -42.39187 -39.31287 -37.51919 -33.20235 -33.04560 -32.85583 -32.52837 -31.66289 -29.42051 -27.53949 -26.78308 -25.92674 -23.94574 -22.94714 -21.83566 -21.42550 -21.09373 -20.02552 -18.97119 -17.58311 -17.17323 -16.78838 -16.38058 -15.90057 -15.79192 -15.34410 -14.90811 -14.70706 -14.36115 -14.23471 -13.90906 -13.81353 -13.58699 -13.54280 -13.21585 -12.94225 -12.75753 -12.63652 -12.43007 -12.08477 -11.97910 -11.81105 -11.35150 -11.32347 -11.17850 -10.92223 -10.87532 -10.67504 -10.53401 -9.93372 -9.74851 -9.41198 -9.26255 -9.07815 -8.92235 -8.48374 -7.92749 -7.36700 -6.07153 -4.08389 0.61288 0.94098 1.91982 2.65197 2.75507 2.94949 3.31676 3.35826 3.39015 3.42219 3.94382 4.39423 4.41798 4.50100 4.56040 4.82232 4.93984 5.04842 5.16187 5.21845 5.29518 5.31136 5.41330 5.48720 5.50757 5.56745 5.61698 5.70387 5.80464 5.86486 5.91428 5.93926 5.96318 6.02802 6.10684 6.22446 6.31534 6.35479 6.56382 6.58615 6.69199 6.97879 7.03742 7.26363 7.27042 7.39025 7.72555 7.98426 8.08358 8.43914 8.97977 9.55769 11.03510 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.013689 B = 0.002757 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.988548 B =10154.641393 C =11135.108514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C 0.083 3.917 4 N -0.524 5.524 5 C 0.191 3.809 6 C -0.507 4.507 7 H 0.063 0.937 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.897 3.103 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.121 3.879 15 C 0.039 3.961 16 C -0.220 4.220 17 C -0.181 4.181 18 C 0.006 3.994 19 C -0.022 4.022 20 C -0.061 4.061 21 C -0.160 4.160 22 C 0.106 3.894 23 F -0.140 7.140 24 C -0.156 4.156 25 C -0.032 4.032 26 C -0.118 4.118 27 O -0.154 6.154 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.031 0.969 34 H 0.001 0.999 35 H 0.262 0.738 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.620 13.761 8.881 21.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.181 4.181 3 C -0.045 4.045 4 N -0.247 5.247 5 C 0.067 3.933 6 C -0.546 4.546 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.725 3.275 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.008 4.008 15 C -0.013 4.013 16 C -0.240 4.240 17 C -0.201 4.201 18 C -0.044 4.044 19 C -0.022 4.022 20 C -0.079 4.079 21 C -0.178 4.178 22 C 0.087 3.913 23 F -0.118 7.118 24 C -0.175 4.175 25 C -0.033 4.033 26 C -0.175 4.175 27 O -0.050 6.050 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.132 0.868 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.049 0.951 34 H 0.019 0.981 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.897 14.129 9.036 21.157 hybrid contribution 0.067 -0.505 -0.834 0.977 sum -12.830 13.624 8.202 20.433 Atomic orbital electron populations 1.23715 0.95951 1.00852 1.04578 1.23925 0.96230 1.01524 0.96421 1.21351 0.94188 0.92622 0.96327 1.62379 1.13106 1.50635 0.98613 1.19819 0.88522 0.86820 0.98179 1.21074 1.13264 1.08798 1.11469 0.91899 1.24957 0.97505 0.95047 0.96920 1.69937 1.31861 1.13164 1.38820 0.86566 0.80278 0.77856 0.82773 1.20136 1.21359 1.20253 1.20603 0.96854 0.87698 0.95608 1.22765 0.92806 0.88262 0.97474 1.21486 0.96527 0.97458 1.08542 1.21674 0.98474 0.95840 1.04083 1.20055 0.88477 0.89230 1.06640 1.17696 1.02227 0.88733 0.93557 1.21033 0.97472 0.90100 0.99330 1.21008 1.03303 0.98597 0.94926 1.17784 1.00636 0.79529 0.93396 1.91503 1.93442 1.39698 1.87181 1.20923 1.04228 0.90842 1.01491 1.19927 0.95044 0.94784 0.93515 1.20876 1.02901 0.94945 0.98731 1.84143 1.38672 1.19982 1.62185 0.89347 0.89153 0.86834 0.91917 0.88890 0.95084 0.98135 0.92820 0.91630 0.89589 0.83575 0.83757 0.84300 0.84269 0.84350 0.89881 0.91112 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.00 14.21 29.01 0.41 -2.59 16 2 C -0.16 -2.75 7.46 -36.03 -0.27 -3.02 16 3 C 0.08 1.55 5.47 -4.97 -0.03 1.52 16 4 N -0.52 -10.83 4.65 -238.96 -1.11 -11.94 16 5 C 0.19 4.70 4.54 -4.98 -0.02 4.68 16 6 C -0.51 -13.77 8.48 -34.44 -0.29 -14.06 16 7 H 0.06 1.70 7.11 -52.48 -0.37 1.33 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -25.94 13.29 55.43 0.74 -25.20 16 10 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 C 0.12 2.10 5.37 -4.98 -0.03 2.07 16 15 C 0.04 0.63 6.25 -35.56 -0.22 0.40 16 16 C -0.22 -3.10 9.84 -39.80 -0.39 -3.49 16 17 C -0.18 -2.34 10.75 -39.38 -0.42 -2.76 16 18 C 0.01 0.08 5.54 -36.50 -0.20 -0.12 16 19 C -0.02 -0.26 5.79 -104.98 -0.61 -0.87 16 20 C -0.06 -0.63 9.70 -39.19 -0.38 -1.01 16 21 C -0.16 -1.51 10.01 -39.57 -0.40 -1.90 16 22 C 0.11 1.09 7.30 -39.33 -0.29 0.80 16 23 F -0.14 -1.49 17.26 2.25 0.04 -1.45 16 24 C -0.16 -1.57 9.67 -39.57 -0.38 -1.95 16 25 C -0.03 -0.36 5.91 -104.23 -0.62 -0.98 16 26 C -0.12 -1.21 9.24 36.01 0.33 -0.88 16 27 O -0.15 -2.53 9.76 4.59 0.04 -2.49 16 28 H 0.09 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.09 1.15 7.11 -52.48 -0.37 0.78 16 30 H 0.11 2.17 6.75 -52.49 -0.35 1.82 16 31 H 0.06 1.07 6.35 -51.93 -0.33 0.74 16 32 H 0.09 1.91 6.79 -51.93 -0.35 1.56 16 33 H 0.03 0.83 7.87 -51.93 -0.41 0.42 16 34 H 0.00 0.02 6.26 -51.93 -0.33 -0.30 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.07 1.07 6.78 -51.93 -0.35 0.72 16 37 H 0.09 1.50 7.82 -51.93 -0.41 1.09 16 38 H 0.15 1.85 7.22 -52.49 -0.38 1.47 16 39 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 42 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 45 H 0.07 0.83 6.79 -51.93 -0.35 0.48 16 LS Contribution 378.47 15.07 5.70 5.70 Total: -1.00 -29.29 378.47 -9.61 -38.89 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.10 Total: 2.86 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -3.90 Total: -22.67 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: -0.38 Total: -37.14 kcal Atomic # 8 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.29 -9.61 -38.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430111711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.544 kcal (2) G-P(sol) polarization free energy of solvation -29.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds