Wall clock time and date at job start Sat Apr 11 2020 02:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99884 * 2 1 4 4 N 1.46909 * 109.46817 * 124.08492 * 3 2 1 5 5 C 1.46897 * 111.00030 * 62.53264 * 4 3 2 6 6 C 1.50694 * 109.47034 * 66.05054 * 5 4 3 7 7 H 1.08006 * 120.00267 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00159 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99748 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00084 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46968 * 60.00074 * 10 8 6 12 12 H 1.48499 * 109.47087 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47107 * 299.99816 * 10 8 6 14 14 C 1.46902 * 110.99522 * 298.57988 * 4 3 2 15 15 C 1.50697 * 109.47374 * 288.43066 * 14 4 3 16 16 C 1.34717 * 125.66528 * 95.20648 * 15 14 4 17 17 C 1.40945 * 107.03281 * 180.02562 * 16 15 14 18 18 C 1.35946 * 106.74394 * 359.97438 * 17 16 15 19 19 C 1.47789 * 125.93709 * 180.02562 * 18 17 16 20 20 C 1.39609 * 120.12177 * 309.72566 * 19 18 17 21 21 C 1.37903 * 119.87925 * 179.72049 * 20 19 18 22 22 C 1.38595 * 120.12090 * 0.57740 * 21 20 19 23 23 F 1.35104 * 119.87889 * 179.71774 * 22 21 20 24 24 C 1.38558 * 120.24379 * 359.69653 * 22 21 20 25 25 C 1.37936 * 120.11917 * 0.02562 * 24 22 21 26 26 C 1.50703 * 120.06041 * 180.02562 * 25 24 22 27 27 O 1.34325 * 125.66385 * 274.90388 * 15 14 4 28 28 H 1.07991 * 120.00076 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99619 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.00095 * 180.02562 * 2 1 3 31 31 H 1.08995 * 109.47538 * 4.08579 * 3 2 1 32 32 H 1.08997 * 109.47013 * 244.07683 * 3 2 1 33 33 H 1.09004 * 109.47102 * 186.04950 * 5 4 3 34 34 H 1.08999 * 109.47341 * 306.04705 * 5 4 3 35 35 H 0.97005 * 120.00111 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.47269 * 48.43455 * 14 4 3 37 37 H 1.08998 * 109.46824 * 168.43035 * 14 4 3 38 38 H 1.08000 * 126.48412 * 0.02562 * 16 15 14 39 39 H 1.08001 * 126.63095 * 179.97438 * 17 16 15 40 40 H 1.07999 * 120.06064 * 0.02562 * 20 19 18 41 41 H 1.08005 * 119.93790 * 180.27040 * 21 20 19 42 42 H 1.08004 * 119.94035 * 180.02562 * 24 22 21 43 43 H 1.09002 * 109.47258 * 269.97508 * 26 25 24 44 44 H 1.08997 * 109.47512 * 29.97242 * 26 25 24 45 45 H 1.09001 * 109.47419 * 149.98219 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9806 1.3411 1.1471 5 6 3.9861 0.2745 1.0509 6 6 4.8821 0.5342 -0.1325 7 1 4.7205 1.4044 -0.7516 8 6 5.9076 -0.3395 -0.4258 9 7 6.1041 -1.3993 0.3277 10 14 7.0179 -0.0179 -1.8932 11 1 7.6993 1.2903 -1.7209 12 1 8.0345 -1.0960 -1.9904 13 1 6.2029 0.0080 -3.1342 14 6 2.2421 1.2557 2.4142 15 6 1.5066 2.5487 2.6552 16 6 0.2211 2.7926 2.3345 17 6 -0.0594 4.1157 2.7311 18 6 1.0823 4.6110 3.2781 19 6 1.2596 5.9687 3.8343 20 6 0.8769 7.0862 3.0901 21 6 1.0392 8.3505 3.6164 22 6 1.5922 8.5135 4.8767 23 9 1.7543 9.7547 5.3852 24 6 1.9791 7.4083 5.6174 25 6 1.8160 6.1388 5.1031 26 6 2.2367 4.9376 5.9101 27 8 2.0222 3.6475 3.2305 28 1 -0.5400 -0.9352 -0.0004 29 1 -0.5400 0.9354 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3575 2.1323 0.0732 32 1 2.6342 1.3951 -0.9242 33 1 4.5840 0.2555 1.9621 34 1 3.4862 -0.6858 0.9244 35 1 6.8258 -2.0139 0.1217 36 1 1.5268 0.4348 2.3633 37 1 2.9416 1.0779 3.2310 38 1 -0.4648 2.1045 1.8629 39 1 -0.9997 4.6356 2.6217 40 1 0.4499 6.9605 2.1061 41 1 0.7394 9.2155 3.0432 42 1 2.4091 7.5410 6.5992 43 1 3.2760 4.6961 5.6874 44 1 2.1350 5.1597 6.9723 45 1 1.6035 4.0880 5.6542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430111711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:19:59 Heat of formation + Delta-G solvation = 2.380441 kcal Electronic energy + Delta-G solvation = -27138.088166 eV Core-core repulsion = 23229.585224 eV Total energy + Delta-G solvation = -3908.502942 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.95679 -43.50707 -40.13282 -39.06460 -34.95119 -34.10361 -33.98346 -33.75636 -32.82687 -30.71190 -28.78585 -28.18902 -27.16251 -25.49740 -23.96076 -23.05403 -22.51847 -22.32494 -21.12443 -20.40194 -18.50357 -18.36719 -18.05110 -17.67799 -17.07487 -16.87633 -16.66211 -16.43144 -15.98699 -15.88904 -15.34934 -15.07664 -14.75859 -14.56191 -14.50344 -14.32638 -14.16005 -14.02789 -13.76589 -13.69800 -13.28405 -13.21975 -12.89793 -12.85608 -12.66260 -12.59434 -12.43039 -12.29928 -12.17699 -12.06737 -11.76454 -11.38875 -10.81487 -10.61336 -10.26954 -10.10307 -9.92337 -9.10077 -8.89236 -8.19527 -6.28475 -0.24967 0.17396 0.82571 1.40157 1.40984 1.43332 1.50973 1.69329 1.92302 2.40749 2.56201 3.13301 3.15757 3.40063 3.54774 3.68533 3.77033 3.99179 4.09692 4.13891 4.15153 4.25005 4.28576 4.35938 4.53012 4.54645 4.61521 4.67378 4.68097 4.79648 4.94110 4.95576 5.01597 5.03859 5.05887 5.09610 5.14863 5.23452 5.28060 5.32450 5.40606 5.61719 5.66460 5.76539 5.80158 5.83310 6.06983 6.22437 6.34709 6.58151 6.85838 7.40236 8.90780 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.013689 B = 0.002757 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.988548 B =10154.641393 C =11135.108514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.195 4.195 3 C 0.092 3.908 4 N -0.538 5.538 5 C 0.208 3.792 6 C -0.521 4.521 7 H 0.059 0.941 8 C 0.006 3.994 9 N -0.932 5.932 10 Si 0.963 3.037 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.267 1.267 14 C 0.127 3.873 15 C 0.007 3.993 16 C -0.203 4.203 17 C -0.180 4.180 18 C 0.006 3.994 19 C -0.046 4.046 20 C -0.059 4.059 21 C -0.154 4.154 22 C 0.098 3.902 23 F -0.142 7.142 24 C -0.157 4.157 25 C -0.043 4.043 26 C -0.116 4.116 27 O -0.179 6.179 28 H 0.108 0.892 29 H 0.115 0.885 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.001 0.999 34 H -0.016 1.016 35 H 0.264 0.736 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.165 0.835 39 H 0.175 0.825 40 H 0.156 0.844 41 H 0.164 0.836 42 H 0.156 0.844 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.771 15.685 8.259 23.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.215 4.215 3 C -0.035 4.035 4 N -0.261 5.261 5 C 0.083 3.917 6 C -0.559 4.559 7 H 0.077 0.923 8 C -0.193 4.193 9 N -0.573 5.573 10 Si 0.788 3.212 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.192 1.192 14 C 0.000 4.000 15 C -0.044 4.044 16 C -0.223 4.223 17 C -0.199 4.199 18 C -0.044 4.044 19 C -0.046 4.046 20 C -0.077 4.077 21 C -0.173 4.173 22 C 0.079 3.921 23 F -0.121 7.121 24 C -0.175 4.175 25 C -0.044 4.044 26 C -0.172 4.172 27 O -0.076 6.076 28 H 0.126 0.874 29 H 0.133 0.867 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.019 0.981 34 H 0.002 0.998 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.182 0.818 39 H 0.192 0.808 40 H 0.174 0.826 41 H 0.182 0.818 42 H 0.173 0.827 43 H 0.091 0.909 44 H 0.112 0.888 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.072 16.063 8.413 23.579 hybrid contribution 0.626 -1.000 -0.561 1.307 sum -14.446 15.063 7.852 22.299 Atomic orbital electron populations 1.23979 0.94535 1.02864 0.99291 1.23534 0.97259 0.99397 1.01307 1.21214 0.93821 0.94283 0.94198 1.62234 1.14127 1.48819 1.00897 1.19405 0.89006 0.87431 0.95886 1.21384 1.13843 1.08594 1.12104 0.92311 1.25809 0.98977 0.94772 0.99702 1.70059 1.32589 1.14082 1.40529 0.85525 0.78358 0.77784 0.79511 1.19688 1.20818 1.19233 1.20458 0.96601 0.89514 0.93465 1.22463 0.93652 0.88063 1.00241 1.21720 0.95544 0.98116 1.06931 1.21996 0.99205 0.95286 1.03398 1.20548 0.88380 0.89398 1.06038 1.17905 1.03874 0.88493 0.94352 1.21226 0.96974 0.89701 0.99824 1.21272 1.02235 0.99138 0.94633 1.17976 1.00774 0.79452 0.93884 1.91501 1.93476 1.39804 1.87271 1.21090 1.03842 0.90324 1.02253 1.20043 0.95343 0.95385 0.93595 1.20850 1.01857 0.94353 1.00135 1.84107 1.40043 1.20662 1.62787 0.87398 0.86742 0.89847 0.89912 0.91661 0.98129 0.99842 0.92713 0.90565 0.90987 0.81797 0.80783 0.82604 0.81819 0.82658 0.90929 0.88849 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.29 14.21 67.78 0.96 -3.33 16 2 C -0.20 -6.65 7.46 25.64 0.19 -6.46 16 3 C 0.09 3.48 5.47 85.56 0.47 3.95 16 4 N -0.54 -23.12 4.65 -909.94 -4.23 -27.36 16 5 C 0.21 10.89 4.54 85.56 0.39 11.28 16 6 C -0.52 -29.39 8.48 25.60 0.22 -29.17 16 7 H 0.06 3.29 7.11 -2.91 -0.02 3.27 16 8 C 0.01 0.32 5.46 84.66 0.46 0.78 16 9 N -0.93 -55.61 13.29 21.45 0.28 -55.32 16 10 Si 0.96 44.41 29.54 68.60 2.03 46.43 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 14 C 0.13 4.59 5.37 85.56 0.46 5.05 16 15 C 0.01 0.22 6.25 24.88 0.16 0.37 16 16 C -0.20 -5.27 9.84 22.12 0.22 -5.06 16 17 C -0.18 -4.18 10.75 22.40 0.24 -3.94 16 18 C 0.01 0.16 5.54 24.27 0.13 0.29 16 19 C -0.05 -1.05 5.79 -20.10 -0.12 -1.17 16 20 C -0.06 -1.08 9.70 22.52 0.22 -0.86 16 21 C -0.15 -2.51 10.01 22.28 0.22 -2.29 16 22 C 0.10 1.83 7.30 22.43 0.16 2.00 16 23 F -0.14 -2.75 17.26 44.97 0.78 -1.97 16 24 C -0.16 -2.91 9.67 22.27 0.22 -2.69 16 25 C -0.04 -0.93 5.91 -19.61 -0.12 -1.05 16 26 C -0.12 -2.35 9.24 71.24 0.66 -1.70 16 27 O -0.18 -5.95 9.76 -6.49 -0.06 -6.01 16 28 H 0.11 2.37 8.06 -2.92 -0.02 2.35 16 29 H 0.11 2.40 7.11 -2.91 -0.02 2.38 16 30 H 0.08 3.35 6.75 -2.91 -0.02 3.33 16 31 H 0.08 2.74 6.35 -2.39 -0.02 2.72 16 32 H 0.07 2.77 6.79 -2.39 -0.02 2.75 16 33 H 0.00 0.04 7.87 -2.38 -0.02 0.02 16 34 H -0.02 -0.88 6.26 -2.39 -0.01 -0.90 16 35 H 0.26 14.89 8.31 -92.70 -0.77 14.12 16 36 H 0.08 2.54 6.78 -2.39 -0.02 2.52 16 37 H 0.07 2.71 7.82 -2.39 -0.02 2.69 16 38 H 0.16 3.55 7.22 -2.91 -0.02 3.53 16 39 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 40 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 41 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 42 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 43 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 44 H 0.09 1.40 8.09 -2.39 -0.02 1.38 16 45 H 0.06 1.38 6.79 -2.39 -0.02 1.37 16 Total: -1.00 -65.62 378.47 4.93 -60.69 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 1.00 Total: 17.51 kcal Atomic # 6 Polarization: -39.12 SS G_CDS: 5.14 Total: -33.98 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -3.95 Total: -82.68 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.06 Total: -6.01 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.78 Total: -1.97 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -65.62 4.93 -60.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430111711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.072 kcal (2) G-P(sol) polarization free energy of solvation -65.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds