Wall clock time and date at job start Sat Apr 11 2020 02:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.40036 * 119.84459 * 2 1 4 4 C 1.35783 * 119.24197 * 179.97438 * 3 2 1 5 5 C 1.50708 * 120.48771 * 180.02562 * 4 3 2 6 6 N 1.35975 * 119.02138 * 0.02562 * 4 3 2 7 7 N 1.40096 * 133.35039 * 179.97438 * 6 4 3 8 8 C 1.31181 * 107.02379 * 180.02562 * 7 6 4 9 9 C 1.50705 * 125.18281 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46971 * 90.00045 * 9 8 7 11 11 O 1.21278 * 119.99872 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99935 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99967 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47218 * 178.28096 * 13 12 10 15 15 C 1.50701 * 115.54868 * 65.13925 * 14 13 12 16 16 H 1.07999 * 120.00045 * 265.40433 * 15 14 13 17 17 C 1.37878 * 119.99910 * 85.40855 * 15 14 13 18 18 N 1.31517 * 119.99795 * 353.55015 * 17 15 14 19 19 Si 1.86800 * 119.99988 * 173.55210 * 17 15 14 20 20 H 1.48501 * 109.47073 * 89.99558 * 19 17 15 21 21 H 1.48502 * 109.47003 * 209.99785 * 19 17 15 22 22 H 1.48508 * 109.47019 * 329.99928 * 19 17 15 23 23 C 1.53004 * 117.49671 * 279.47140 * 14 13 12 24 24 C 1.52994 * 117.49823 * 210.81157 * 14 13 12 25 25 N 1.32605 * 109.63047 * 0.02562 * 8 7 6 26 26 C 1.32822 * 109.75805 * 359.97438 * 25 8 7 27 27 N 1.31346 * 119.84524 * 179.72300 * 2 1 3 28 28 H 1.08998 * 109.46989 * 90.00461 * 1 2 3 29 29 H 1.09002 * 109.46772 * 210.00262 * 1 2 3 30 30 H 1.08994 * 109.47048 * 330.00268 * 1 2 3 31 31 H 1.08010 * 120.37990 * 359.95102 * 3 2 1 32 32 H 1.09002 * 109.46662 * 90.00464 * 5 4 3 33 33 H 1.08997 * 109.46920 * 209.99974 * 5 4 3 34 34 H 1.08997 * 109.46747 * 330.00515 * 5 4 3 35 35 H 1.08997 * 109.46850 * 210.00218 * 9 8 7 36 36 H 1.09001 * 109.46924 * 330.00459 * 9 8 7 37 37 H 0.97000 * 119.99626 * 0.02562 * 12 10 9 38 38 H 1.09001 * 109.47295 * 298.28013 * 13 12 10 39 39 H 1.09008 * 109.47121 * 58.27925 * 13 12 10 40 40 H 0.97002 * 119.99750 * 185.07328 * 18 17 15 41 41 H 1.09000 * 117.49718 * 0.02562 * 23 14 13 42 42 H 1.08998 * 117.49540 * 145.02079 * 23 14 13 43 43 H 1.08998 * 117.50205 * 214.97514 * 24 14 13 44 44 H 1.09001 * 117.50360 * 359.97428 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2040 1.2146 0.0000 4 6 3.5617 1.2004 0.0005 5 6 4.3400 2.4910 0.0011 6 7 4.2088 0.0045 0.0005 7 7 5.5625 -0.3565 0.0005 8 6 5.6104 -1.6674 -0.0001 9 6 6.8730 -2.4902 -0.0008 10 6 7.2943 -2.7651 1.4197 11 8 6.6340 -2.3356 2.3419 12 7 8.4043 -3.4891 1.6654 13 6 8.8135 -3.7567 3.0463 14 6 10.0709 -4.6284 3.0458 15 6 11.3046 -3.9893 2.4622 16 1 11.5575 -4.1513 1.4248 17 6 12.1105 -3.1977 3.2527 18 7 11.7382 -2.8965 4.4776 19 14 13.7311 -2.5529 2.5839 20 1 13.5083 -1.2396 1.9275 21 1 14.6977 -2.3911 3.6996 22 1 14.2757 -3.5156 1.5928 23 6 9.8875 -6.1327 2.8350 24 6 10.2621 -5.5932 4.2177 25 7 4.3785 -2.1582 -0.0010 26 6 3.4987 -1.1632 -0.0005 27 7 2.1607 -1.1392 0.0055 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6676 2.1521 -0.0008 32 1 4.5272 2.8018 1.0290 33 1 5.2899 2.3426 -0.5124 34 1 3.7656 3.2617 -0.5127 35 1 6.6913 -3.4340 -0.5150 36 1 7.6631 -1.9427 -0.5146 37 1 8.9321 -3.8329 0.9277 38 1 9.0249 -2.8144 3.5518 39 1 8.0108 -4.2772 3.5688 40 1 12.2678 -2.2807 5.0079 41 1 8.8712 -6.5013 2.6963 42 1 10.6595 -6.6601 2.2746 43 1 11.2803 -5.7661 4.5663 44 1 9.4924 -5.6067 4.9893 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431182110.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:20:02 Heat of formation + Delta-G solvation = 114.288150 kcal Electronic energy + Delta-G solvation = -26964.091597 eV Core-core repulsion = 23112.654050 eV Total energy + Delta-G solvation = -3851.437547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.02853 -39.58330 -38.76306 -36.67371 -35.62308 -33.30273 -33.10853 -31.97475 -31.53093 -30.55647 -28.85317 -27.96315 -26.15689 -25.11343 -23.61868 -22.38515 -21.26935 -20.98159 -19.74718 -19.27418 -18.48896 -18.17938 -17.10554 -16.50414 -16.04779 -15.51196 -15.00302 -14.92783 -14.63195 -14.45433 -14.24294 -13.98621 -13.77887 -13.57457 -13.35174 -13.13965 -12.99685 -12.70781 -12.64065 -12.58306 -12.28869 -12.03439 -11.62612 -11.59763 -11.48826 -11.00277 -10.93349 -10.52835 -10.26044 -10.19611 -10.16145 -9.75888 -9.64292 -9.28985 -8.96648 -8.82609 -8.49945 -8.29009 -8.08413 -6.08123 -4.16957 0.19695 0.55166 1.73333 2.37968 3.00587 3.17250 3.22811 3.25391 3.33364 3.35149 3.60538 3.79453 3.97800 4.30031 4.35129 4.47667 4.70702 4.80724 4.85434 4.97835 5.08116 5.15624 5.19154 5.21912 5.26689 5.36715 5.42841 5.47235 5.53354 5.77681 6.01647 6.03793 6.16293 6.18894 6.35037 6.47886 6.58062 6.71216 6.88535 7.10327 7.26813 7.30487 7.43631 7.48716 7.81041 7.87884 8.25395 8.33691 8.82343 8.85803 9.49943 10.99706 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.019418 B = 0.002480 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.627652 B =11285.526787 C =12111.731643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.229 3.771 3 C -0.234 4.234 4 C 0.209 3.791 5 C -0.122 4.122 6 N -0.328 5.328 7 N -0.321 5.321 8 C 0.307 3.693 9 C -0.056 4.056 10 C 0.514 3.486 11 O -0.548 6.548 12 N -0.699 5.699 13 C 0.165 3.835 14 C 0.027 3.973 15 C -0.501 4.501 16 H 0.061 0.939 17 C 0.073 3.927 18 N -0.874 5.874 19 Si 0.890 3.110 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.210 4.210 24 C -0.148 4.148 25 N -0.513 5.513 26 C 0.450 3.550 27 N -0.463 5.463 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.171 0.829 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.402 0.598 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.262 0.738 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.351 10.262 -11.842 24.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.063 3.937 3 C -0.260 4.260 4 C 0.090 3.910 5 C -0.179 4.179 6 N -0.108 5.108 7 N -0.152 5.152 8 C 0.026 3.974 9 C -0.098 4.098 10 C 0.297 3.703 11 O -0.426 6.426 12 N -0.348 5.348 13 C 0.042 3.958 14 C 0.026 3.974 15 C -0.538 4.538 16 H 0.079 0.921 17 C -0.131 4.131 18 N -0.510 5.510 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.247 4.247 24 C -0.186 4.186 25 N -0.245 5.245 26 C 0.089 3.911 27 N -0.180 5.180 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.188 0.812 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.236 0.764 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.283 9.676 -10.951 24.195 hybrid contribution 1.418 1.076 -0.466 1.840 sum -17.865 10.752 -11.417 23.772 Atomic orbital electron populations 1.20857 0.86362 1.04844 1.04307 1.21976 0.97983 0.86894 0.86800 1.21544 0.91391 1.01289 1.11742 1.20858 0.92103 0.86721 0.91312 1.21063 1.01016 0.90729 1.05083 1.48766 1.07838 1.07610 1.46619 1.78504 0.89106 1.14533 1.33041 1.23581 0.93373 0.88572 0.91903 1.20106 0.91082 1.00493 0.98132 1.19886 0.81588 0.79258 0.89566 1.90704 1.54131 1.51834 1.45968 1.45865 1.25246 1.52803 1.10850 1.21012 0.94413 1.00409 0.79999 1.19031 0.93528 0.85796 0.99023 1.20345 1.05955 1.31141 0.96388 0.92089 1.25000 0.97635 0.95892 0.94564 1.69981 1.38962 1.33205 1.08887 0.86630 0.83805 0.79213 0.78603 1.20650 1.21192 1.19775 1.23030 0.99477 1.00417 1.01784 1.22492 1.00542 1.05504 0.90083 1.70683 0.98172 1.26850 1.28805 1.22666 0.90038 0.81862 0.96496 1.67781 1.02101 1.28939 1.19134 0.88878 0.89252 0.89321 0.81179 0.88470 0.89081 0.88551 0.85632 0.85908 0.76376 0.90953 0.94396 0.92849 0.91547 0.90301 0.89808 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.48 10.19 36.01 0.37 -0.11 16 2 C 0.23 2.10 6.83 -82.12 -0.56 1.54 16 3 C -0.23 -1.72 9.39 -39.79 -0.37 -2.09 16 4 C 0.21 2.16 6.85 -81.63 -0.56 1.60 16 5 C -0.12 -0.84 10.13 36.01 0.36 -0.47 16 6 N -0.33 -5.03 3.90 -10.10 -0.04 -5.07 16 7 N -0.32 -5.58 12.68 32.39 0.41 -5.17 16 8 C 0.31 5.47 6.59 -157.01 -1.03 4.43 16 9 C -0.06 -0.84 6.33 -29.03 -0.18 -1.02 16 10 C 0.51 10.08 7.82 -10.98 -0.09 9.99 16 11 O -0.55 -13.22 16.03 5.56 0.09 -13.13 16 12 N -0.70 -13.64 5.47 -60.29 -0.33 -13.97 16 13 C 0.16 3.80 5.50 -4.04 -0.02 3.78 16 14 C 0.03 0.64 1.38 -155.66 -0.21 0.42 16 15 C -0.50 -12.81 8.63 -34.44 -0.30 -13.11 16 16 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 17 C 0.07 1.95 5.39 -17.82 -0.10 1.85 16 18 N -0.87 -24.42 12.91 55.43 0.72 -23.71 16 19 Si 0.89 20.52 29.55 -169.99 -5.02 15.50 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 C -0.21 -4.37 9.96 -26.69 -0.27 -4.64 16 24 C -0.15 -3.41 9.42 -26.70 -0.25 -3.66 16 25 N -0.51 -9.71 11.25 -11.80 -0.13 -9.85 16 26 C 0.45 7.66 8.99 -323.14 -2.91 4.76 16 27 N -0.46 -6.60 10.40 -10.04 -0.10 -6.70 16 28 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.16 8.09 -51.93 -0.42 -0.26 16 31 H 0.17 0.44 8.06 -52.48 -0.42 0.02 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 0.31 8.09 -51.93 -0.42 -0.11 16 35 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.40 6.89 8.37 -40.82 -0.34 6.55 16 38 H 0.07 1.92 8.14 -51.93 -0.42 1.50 16 39 H 0.04 0.88 8.09 -51.92 -0.42 0.46 16 40 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 43 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 44 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 383.29 15.07 5.78 5.78 Total: -1.00 -36.89 383.29 -10.98 -47.87 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.22 Total: 5.19 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -6.12 Total: 3.26 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: 0.52 Total: -64.46 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.09 Total: -13.13 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.89 -10.98 -47.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431182110.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.154 kcal (2) G-P(sol) polarization free energy of solvation -36.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds