Wall clock time and date at job start Sat Apr 11 2020 02:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35065 * 125.53677 * 2 1 4 4 C 1.41099 * 108.24124 * 179.97438 * 3 2 1 5 5 N 1.33048 * 126.37575 * 180.02562 * 4 3 2 6 6 C 1.33712 * 119.99436 * 0.02562 * 5 4 3 7 7 O 1.21868 * 120.00749 * 0.02562 * 6 5 4 8 8 C 1.48101 * 119.99554 * 180.02562 * 6 5 4 9 9 C 1.39473 * 119.63129 * 180.02562 * 8 6 5 10 10 C 1.38234 * 119.15575 * 180.02562 * 9 8 6 11 11 C 1.39439 * 118.43715 * 359.97438 * 10 9 8 12 12 N 1.39171 * 120.40840 * 180.02562 * 11 10 9 13 13 C 1.46499 * 119.99915 * 359.97438 * 12 11 10 14 14 C 1.46502 * 120.00023 * 179.97438 * 12 11 10 15 15 C 1.39378 * 119.18756 * 0.27424 * 11 10 9 16 16 N 1.31400 * 120.77238 * 359.44767 * 15 11 10 17 17 N 1.37414 * 107.25379 * 0.25974 * 4 3 2 18 18 H 0.96999 * 126.35916 * 179.73720 * 17 4 3 19 19 N 1.36387 * 125.53100 * 179.97438 * 2 1 3 20 20 C 1.46499 * 125.85689 * 0.02562 * 19 2 1 21 21 C 1.50705 * 109.46579 * 85.00329 * 20 19 2 22 22 H 1.07994 * 120.00373 * 0.02562 * 21 20 19 23 23 C 1.37886 * 119.99533 * 180.02562 * 21 20 19 24 24 N 1.31514 * 119.99423 * 180.02562 * 23 21 20 25 25 Si 1.86792 * 120.00095 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47349 * 90.00138 * 25 23 21 27 27 H 1.48498 * 109.46973 * 210.00095 * 25 23 21 28 28 H 1.48505 * 109.47393 * 330.00098 * 25 23 21 29 29 H 1.09003 * 109.46938 * 90.01934 * 1 2 3 30 30 H 1.08996 * 109.47423 * 210.02414 * 1 2 3 31 31 H 1.09004 * 109.46966 * 330.02777 * 1 2 3 32 32 H 1.07997 * 125.87819 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.42039 * 0.02562 * 9 8 6 34 34 H 1.08000 * 120.77969 * 179.97438 * 10 9 8 35 35 H 1.09002 * 109.47391 * 270.00198 * 13 12 11 36 36 H 1.09001 * 109.46813 * 150.00255 * 13 12 11 37 37 H 1.09004 * 109.47041 * 30.00382 * 13 12 11 38 38 H 1.08994 * 109.47354 * 269.99918 * 14 12 11 39 39 H 1.09002 * 109.47278 * 29.99962 * 14 12 11 40 40 H 1.09006 * 109.46998 * 149.99484 * 14 12 11 41 41 H 1.08001 * 119.61616 * 179.72743 * 15 11 10 42 42 H 1.09001 * 109.47612 * 205.00362 * 20 19 2 43 43 H 1.08998 * 109.47137 * 325.00546 * 20 19 2 44 44 H 0.96998 * 119.99381 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2920 1.0991 0.0000 4 6 3.6392 0.6796 0.0006 5 7 4.7111 1.4678 0.0013 6 6 4.5636 2.7968 0.0019 7 8 3.4474 3.2861 0.0024 8 6 5.7567 3.6742 0.0021 9 6 5.5940 5.0594 0.0033 10 6 6.7144 5.8690 0.0029 11 6 7.9708 5.2642 0.0019 12 7 9.1261 6.0400 0.0020 13 6 9.0269 7.5017 0.0026 14 6 10.4416 5.3951 0.0014 15 6 8.0554 3.8730 -0.0046 16 7 6.9693 3.1334 0.0012 17 7 3.6382 -0.6945 -0.0050 18 1 4.4190 -1.2701 -0.0096 19 7 2.2996 -1.1099 0.0005 20 6 1.8320 -2.4983 0.0006 21 6 1.5550 -2.9350 -1.4149 22 1 1.7119 -2.2474 -2.2327 23 6 1.1011 -4.2126 -1.6658 24 7 0.8598 -4.5939 -2.9012 25 14 0.8304 -5.4022 -0.2514 26 1 -0.5631 -5.2719 0.2453 27 1 1.0601 -6.7917 -0.7223 28 1 1.7788 -5.0888 0.8475 29 1 -0.3633 -0.0003 -1.0277 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8903 0.5134 32 1 1.9478 2.1227 0.0004 33 1 4.6053 5.4938 0.0046 34 1 6.6189 6.9448 0.0035 35 1 9.0020 7.8647 -1.0248 36 1 9.8904 7.9242 0.5165 37 1 8.1145 7.8036 0.5169 38 1 10.7681 5.2347 1.0288 39 1 10.3760 4.4363 -0.5129 40 1 11.1595 6.0346 -0.5124 41 1 9.0249 3.3972 -0.0100 42 1 2.5985 -3.1399 0.4353 43 1 0.9180 -2.5738 0.5896 44 1 0.5409 -5.4927 -3.0777 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444358216.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:20:05 Heat of formation + Delta-G solvation = 123.245898 kcal Electronic energy + Delta-G solvation = -26534.857096 eV Core-core repulsion = 22683.807987 eV Total energy + Delta-G solvation = -3851.049110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.94843 -40.25646 -38.28293 -36.70150 -34.35332 -33.08590 -32.39413 -32.08307 -31.04482 -30.36998 -28.68005 -27.55668 -27.27414 -25.68997 -23.26366 -23.00594 -22.25698 -21.14280 -19.73212 -19.40155 -17.54531 -17.42418 -17.08208 -16.51813 -15.96222 -15.47605 -15.30590 -15.08389 -14.82265 -14.41516 -14.30571 -14.20629 -13.90659 -13.39104 -13.07198 -13.01107 -12.96986 -12.91976 -12.72525 -12.58950 -12.52856 -12.31512 -12.25778 -11.93525 -11.83854 -11.45576 -11.01882 -10.66537 -10.38359 -10.02583 -9.57703 -9.50169 -9.45450 -9.12844 -9.03244 -8.86495 -8.28732 -7.54581 -6.85283 -6.50190 -4.58328 1.03374 1.46254 1.78135 2.00494 2.80021 2.96764 2.98862 3.01923 3.08167 3.89783 3.98514 4.11662 4.54137 4.64880 4.68161 4.77787 4.80399 4.83442 4.87777 4.97567 4.98341 5.14144 5.26094 5.32392 5.37796 5.40747 5.48623 5.69509 5.80384 5.82371 5.91487 5.98836 6.04272 6.12386 6.26261 6.31092 6.46386 6.66675 6.73042 6.87009 6.94821 7.15166 7.42520 7.62091 7.87484 8.06577 8.19213 8.35875 8.53927 9.02208 9.42110 10.61304 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.026247 B = 0.002139 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.541011 B =13089.201301 C =13746.517118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.192 3.808 3 C -0.331 4.331 4 C 0.472 3.528 5 N -0.668 5.668 6 C 0.550 3.450 7 O -0.582 6.582 8 C 0.057 3.943 9 C -0.073 4.073 10 C -0.173 4.173 11 C 0.172 3.828 12 N -0.630 5.630 13 C 0.091 3.909 14 C 0.091 3.909 15 C 0.018 3.982 16 N -0.385 5.385 17 N -0.465 5.465 18 H 0.446 0.554 19 N -0.339 5.339 20 C 0.227 3.773 21 C -0.561 4.561 22 H 0.085 0.915 23 C 0.084 3.916 24 N -0.876 5.876 25 Si 0.873 3.127 26 H -0.268 1.268 27 H -0.278 1.278 28 H -0.265 1.265 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.185 0.815 33 H 0.143 0.857 34 H 0.134 0.866 35 H 0.050 0.950 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.153 0.847 42 H 0.049 0.951 43 H 0.059 0.941 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.246 17.183 7.820 21.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 C -0.362 4.362 4 C 0.222 3.778 5 N -0.430 5.430 6 C 0.336 3.664 7 O -0.464 6.464 8 C -0.084 4.084 9 C -0.094 4.094 10 C -0.203 4.203 11 C 0.067 3.933 12 N -0.342 5.342 13 C -0.052 4.052 14 C -0.052 4.052 15 C -0.148 4.148 16 N -0.095 5.095 17 N -0.187 5.187 18 H 0.294 0.706 19 N -0.125 5.125 20 C 0.109 3.891 21 C -0.599 4.599 22 H 0.103 0.897 23 C -0.123 4.123 24 N -0.511 5.511 25 Si 0.698 3.302 26 H -0.193 1.193 27 H -0.203 1.203 28 H -0.190 1.190 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.202 0.798 33 H 0.161 0.839 34 H 0.152 0.848 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.170 0.830 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.617 15.800 7.695 21.067 hybrid contribution -0.163 0.104 0.431 0.473 sum 11.453 15.904 8.126 21.217 Atomic orbital electron populations 1.20616 0.86252 1.03727 1.04591 1.21343 0.94470 0.85442 0.92186 1.22311 0.91247 1.00279 1.22406 1.19217 0.91607 0.82252 0.84736 1.68966 1.27208 1.04788 1.41994 1.18431 0.85806 0.85895 0.76303 1.90606 1.25889 1.79296 1.50624 1.20729 0.91638 0.90986 1.04999 1.21914 0.99608 0.93383 0.94543 1.20990 0.90489 1.00170 1.08661 1.19124 0.87088 0.92413 0.94714 1.46173 1.03370 1.04836 1.79789 1.21669 1.02721 0.79478 1.01318 1.21696 0.83348 0.98735 1.01459 1.22511 0.97932 0.88035 1.06278 1.67628 0.97643 1.39127 1.05093 1.44462 0.98458 1.05280 1.70498 0.70595 1.47357 0.93109 1.07472 1.64544 1.20318 0.95958 0.72560 1.00229 1.21216 1.48105 0.99927 0.90655 0.89656 1.24817 0.94053 0.97518 0.95864 1.69858 1.42732 1.19581 1.18919 0.86918 0.79553 0.81371 0.82347 1.19332 1.20268 1.18953 0.88785 0.90365 0.89400 0.79847 0.83921 0.84846 0.93196 0.91428 0.91200 0.93065 0.90901 0.91386 0.83018 0.93331 0.92319 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.30 10.09 36.01 0.36 -0.94 16 2 C 0.19 3.43 6.93 -81.69 -0.57 2.86 16 3 C -0.33 -6.47 9.41 -39.62 -0.37 -6.84 16 4 C 0.47 9.74 8.07 -155.24 -1.25 8.48 16 5 N -0.67 -14.49 10.28 -12.18 -0.13 -14.62 16 6 C 0.55 11.73 7.71 -12.69 -0.10 11.64 16 7 O -0.58 -12.82 13.24 5.04 0.07 -12.75 16 8 C 0.06 1.05 6.75 -82.95 -0.56 0.49 16 9 C -0.07 -1.10 9.62 -39.12 -0.38 -1.48 16 10 C -0.17 -2.10 9.29 -39.14 -0.36 -2.46 16 11 C 0.17 2.05 6.57 -83.66 -0.55 1.50 16 12 N -0.63 -5.50 3.39 -187.39 -0.64 -6.14 16 13 C 0.09 0.55 10.21 59.85 0.61 1.16 16 14 C 0.09 0.57 10.20 59.85 0.61 1.18 16 15 C 0.02 0.25 10.38 -17.31 -0.18 0.07 16 16 N -0.39 -6.85 10.04 -9.59 -0.10 -6.94 16 17 N -0.46 -8.76 7.38 31.33 0.23 -8.53 16 18 H 0.45 7.42 8.96 -182.55 -1.64 5.79 16 19 N -0.34 -6.47 3.63 -58.03 -0.21 -6.68 16 20 C 0.23 4.51 5.00 -5.19 -0.03 4.48 16 21 C -0.56 -13.73 9.94 -34.43 -0.34 -14.07 16 22 H 0.09 2.40 8.06 -52.49 -0.42 1.98 16 23 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 24 N -0.88 -24.00 13.96 55.43 0.77 -23.22 16 25 Si 0.87 18.03 27.47 -169.99 -4.67 13.37 16 26 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 27 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 28 H -0.26 -5.13 6.54 56.52 0.37 -4.76 16 29 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.08 1.02 7.14 -51.93 -0.37 0.65 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.18 3.68 5.77 -52.49 -0.30 3.37 16 33 H 0.14 2.03 7.63 -52.49 -0.40 1.63 16 34 H 0.13 1.21 6.25 -52.49 -0.33 0.88 16 35 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 37 H 0.07 0.41 6.23 -51.93 -0.32 0.08 16 38 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.46 6.19 -51.93 -0.32 0.14 16 40 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16 41 H 0.15 1.68 6.14 -52.49 -0.32 1.36 16 42 H 0.05 0.93 7.20 -51.93 -0.37 0.56 16 43 H 0.06 1.06 6.61 -51.93 -0.34 0.72 16 44 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 368.96 15.07 5.56 5.56 Total: -1.00 -33.23 368.96 -9.15 -42.38 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.84 Total: 9.50 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -3.20 Total: 8.08 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: -0.06 Total: -66.12 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.07 Total: -12.75 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -4.67 Total: 13.37 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.23 -9.15 -42.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444358216.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.622 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds