Wall clock time and date at job start Sat Apr 11 2020 02:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35065 * 125.53677 * 2 1 4 4 C 1.41099 * 108.24124 * 179.97438 * 3 2 1 5 5 N 1.33048 * 126.37575 * 180.02562 * 4 3 2 6 6 C 1.33712 * 119.99436 * 0.02562 * 5 4 3 7 7 O 1.21868 * 120.00749 * 0.02562 * 6 5 4 8 8 C 1.48101 * 119.99554 * 180.02562 * 6 5 4 9 9 C 1.39473 * 119.63129 * 180.02562 * 8 6 5 10 10 C 1.38234 * 119.15575 * 180.02562 * 9 8 6 11 11 C 1.39439 * 118.43715 * 359.97438 * 10 9 8 12 12 N 1.39171 * 120.40840 * 180.02562 * 11 10 9 13 13 C 1.46499 * 119.99915 * 359.97438 * 12 11 10 14 14 C 1.46502 * 120.00023 * 179.97438 * 12 11 10 15 15 C 1.39378 * 119.18756 * 0.27424 * 11 10 9 16 16 N 1.31400 * 120.77238 * 359.44767 * 15 11 10 17 17 N 1.37414 * 107.25379 * 0.25974 * 4 3 2 18 18 H 0.96999 * 126.35916 * 179.73720 * 17 4 3 19 19 N 1.36387 * 125.53100 * 179.97438 * 2 1 3 20 20 C 1.46499 * 125.85689 * 0.02562 * 19 2 1 21 21 C 1.50705 * 109.46579 * 85.00329 * 20 19 2 22 22 H 1.07994 * 120.00373 * 0.02562 * 21 20 19 23 23 C 1.37886 * 119.99533 * 180.02562 * 21 20 19 24 24 N 1.31514 * 119.99423 * 180.02562 * 23 21 20 25 25 Si 1.86792 * 120.00095 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47349 * 90.00138 * 25 23 21 27 27 H 1.48498 * 109.46973 * 210.00095 * 25 23 21 28 28 H 1.48505 * 109.47393 * 330.00098 * 25 23 21 29 29 H 1.09003 * 109.46938 * 90.01934 * 1 2 3 30 30 H 1.08996 * 109.47423 * 210.02414 * 1 2 3 31 31 H 1.09004 * 109.46966 * 330.02777 * 1 2 3 32 32 H 1.07997 * 125.87819 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.42039 * 0.02562 * 9 8 6 34 34 H 1.08000 * 120.77969 * 179.97438 * 10 9 8 35 35 H 1.09002 * 109.47391 * 270.00198 * 13 12 11 36 36 H 1.09001 * 109.46813 * 150.00255 * 13 12 11 37 37 H 1.09004 * 109.47041 * 30.00382 * 13 12 11 38 38 H 1.08994 * 109.47354 * 269.99918 * 14 12 11 39 39 H 1.09002 * 109.47278 * 29.99962 * 14 12 11 40 40 H 1.09006 * 109.46998 * 149.99484 * 14 12 11 41 41 H 1.08001 * 119.61616 * 179.72743 * 15 11 10 42 42 H 1.09001 * 109.47612 * 205.00362 * 20 19 2 43 43 H 1.08998 * 109.47137 * 325.00546 * 20 19 2 44 44 H 0.96998 * 119.99381 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2920 1.0991 0.0000 4 6 3.6392 0.6796 0.0006 5 7 4.7111 1.4678 0.0013 6 6 4.5636 2.7968 0.0019 7 8 3.4474 3.2861 0.0024 8 6 5.7567 3.6742 0.0021 9 6 5.5940 5.0594 0.0033 10 6 6.7144 5.8690 0.0029 11 6 7.9708 5.2642 0.0019 12 7 9.1261 6.0400 0.0020 13 6 9.0269 7.5017 0.0026 14 6 10.4416 5.3951 0.0014 15 6 8.0554 3.8730 -0.0046 16 7 6.9693 3.1334 0.0012 17 7 3.6382 -0.6945 -0.0050 18 1 4.4190 -1.2701 -0.0096 19 7 2.2996 -1.1099 0.0005 20 6 1.8320 -2.4983 0.0006 21 6 1.5550 -2.9350 -1.4149 22 1 1.7119 -2.2474 -2.2327 23 6 1.1011 -4.2126 -1.6658 24 7 0.8598 -4.5939 -2.9012 25 14 0.8304 -5.4022 -0.2514 26 1 -0.5631 -5.2719 0.2453 27 1 1.0601 -6.7917 -0.7223 28 1 1.7788 -5.0888 0.8475 29 1 -0.3633 -0.0003 -1.0277 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8903 0.5134 32 1 1.9478 2.1227 0.0004 33 1 4.6053 5.4938 0.0046 34 1 6.6189 6.9448 0.0035 35 1 9.0020 7.8647 -1.0248 36 1 9.8904 7.9242 0.5165 37 1 8.1145 7.8036 0.5169 38 1 10.7681 5.2347 1.0288 39 1 10.3760 4.4363 -0.5129 40 1 11.1595 6.0346 -0.5124 41 1 9.0249 3.3972 -0.0100 42 1 2.5985 -3.1399 0.4353 43 1 0.9180 -2.5738 0.5896 44 1 0.5409 -5.4927 -3.0777 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444358216.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:20:04 Heat of formation + Delta-G solvation = 99.518510 kcal Electronic energy + Delta-G solvation = -26535.885993 eV Core-core repulsion = 22683.807987 eV Total energy + Delta-G solvation = -3852.078006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.45692 -41.34268 -39.69507 -37.61347 -36.00413 -34.79450 -33.77683 -33.25631 -32.62869 -31.46133 -29.25881 -28.91701 -28.85107 -26.72384 -24.67300 -24.12793 -23.65151 -22.34599 -21.14965 -20.79216 -19.29177 -18.69426 -18.31993 -17.73996 -17.19679 -16.70408 -16.60250 -16.35932 -16.14504 -15.78889 -15.50246 -15.31911 -15.14339 -14.68988 -14.38242 -14.36321 -14.20550 -14.08713 -13.90706 -13.72505 -13.55219 -13.35837 -13.26832 -12.97266 -12.95550 -12.58941 -12.54019 -12.25192 -11.85363 -11.32588 -11.14642 -11.03175 -10.91357 -10.53388 -10.35824 -10.34640 -9.86255 -8.59362 -8.41937 -8.24543 -6.56284 -0.25057 0.34120 0.44774 0.54687 1.38069 1.39954 1.48261 1.51813 2.09932 2.25255 2.62397 2.66246 2.91881 3.33472 3.35766 3.62919 3.68695 3.82999 3.99719 4.15682 4.18728 4.23291 4.34613 4.41548 4.48002 4.54591 4.65601 4.75331 4.78546 4.80052 4.82313 4.89761 4.92561 4.94467 5.01520 5.05476 5.13825 5.25864 5.32358 5.52205 5.88855 6.01498 6.12172 6.17270 6.28737 6.46131 6.54125 6.73027 7.09255 7.14143 7.87351 8.73775 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.026247 B = 0.002139 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.541011 B =13089.201301 C =13746.517118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.201 3.799 3 C -0.347 4.347 4 C 0.453 3.547 5 N -0.687 5.687 6 C 0.536 3.464 7 O -0.605 6.605 8 C 0.008 3.992 9 C -0.071 4.071 10 C -0.172 4.172 11 C 0.189 3.811 12 N -0.623 5.623 13 C 0.081 3.919 14 C 0.081 3.919 15 C 0.008 3.992 16 N -0.417 5.417 17 N -0.464 5.464 18 H 0.453 0.547 19 N -0.343 5.343 20 C 0.232 3.768 21 C -0.562 4.562 22 H 0.031 0.969 23 C 0.026 3.974 24 N -0.933 5.933 25 Si 0.947 3.053 26 H -0.252 1.252 27 H -0.287 1.287 28 H -0.236 1.236 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.177 0.823 33 H 0.143 0.857 34 H 0.168 0.832 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.175 0.825 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.438 18.381 10.002 24.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.075 3.925 3 C -0.378 4.378 4 C 0.204 3.796 5 N -0.450 5.450 6 C 0.323 3.677 7 O -0.489 6.489 8 C -0.130 4.130 9 C -0.093 4.093 10 C -0.201 4.201 11 C 0.080 3.920 12 N -0.331 5.331 13 C -0.061 4.061 14 C -0.061 4.061 15 C -0.160 4.160 16 N -0.127 5.127 17 N -0.187 5.187 18 H 0.302 0.698 19 N -0.130 5.130 20 C 0.114 3.886 21 C -0.600 4.600 22 H 0.050 0.950 23 C -0.175 4.175 24 N -0.571 5.571 25 Si 0.768 3.232 26 H -0.176 1.176 27 H -0.213 1.213 28 H -0.159 1.159 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.136 0.864 32 H 0.194 0.806 33 H 0.160 0.840 34 H 0.186 0.814 35 H 0.078 0.922 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.111 0.889 41 H 0.192 0.808 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.857 17.047 9.893 23.532 hybrid contribution -0.305 -0.074 -0.343 0.465 sum 12.552 16.973 9.550 23.170 Atomic orbital electron populations 1.20831 0.83186 1.06038 1.05075 1.21941 0.96141 0.84407 0.90039 1.22249 0.91267 1.00548 1.23759 1.19470 0.92150 0.82852 0.85140 1.69025 1.27854 1.05385 1.42729 1.19026 0.86869 0.86094 0.75685 1.90551 1.26876 1.79553 1.51925 1.20459 0.91064 0.91785 1.09710 1.21942 1.00769 0.92344 0.94250 1.21264 0.89526 1.01484 1.07861 1.19183 0.88348 0.92111 0.92360 1.46568 1.03154 1.06056 1.77331 1.21950 1.04193 0.77506 1.02429 1.21948 0.82478 0.99201 1.02513 1.22888 0.97667 0.89159 1.06251 1.67461 0.98290 1.40826 1.06151 1.44482 0.98876 1.04908 1.70425 0.69797 1.47421 0.93257 1.07670 1.64620 1.20277 0.97780 0.72961 0.97590 1.21308 1.47687 0.99213 0.91778 0.95045 1.25803 0.93459 0.99552 0.98731 1.70032 1.44763 1.20306 1.21970 0.85740 0.80804 0.77610 0.79019 1.17606 1.21254 1.15924 0.88949 0.88748 0.86424 0.80589 0.83961 0.81421 0.92181 0.88998 0.90746 0.92016 0.91111 0.88870 0.80841 0.91611 0.88999 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.45 10.09 71.24 0.72 -1.73 16 2 C 0.20 7.15 6.93 41.12 0.28 7.44 16 3 C -0.35 -14.03 9.41 22.24 0.21 -13.82 16 4 C 0.45 19.55 8.07 133.89 1.08 20.64 16 5 N -0.69 -31.57 10.28 -311.19 -3.20 -34.77 16 6 C 0.54 24.29 7.71 87.03 0.67 24.96 16 7 O -0.61 -28.28 13.24 -4.89 -0.06 -28.35 16 8 C 0.01 0.32 6.75 41.92 0.28 0.61 16 9 C -0.07 -2.19 9.62 22.57 0.22 -1.98 16 10 C -0.17 -3.89 9.29 22.56 0.21 -3.68 16 11 C 0.19 4.15 6.57 38.54 0.25 4.40 16 12 N -0.62 -8.78 3.39 -746.77 -2.54 -11.32 16 13 C 0.08 0.65 10.21 127.77 1.30 1.96 16 14 C 0.08 0.74 10.20 127.77 1.30 2.04 16 15 C 0.01 0.21 10.38 85.03 0.88 1.09 16 16 N -0.42 -15.33 10.04 -184.25 -1.85 -17.18 16 17 N -0.46 -17.90 7.38 -54.80 -0.40 -18.30 16 18 H 0.45 15.49 8.96 -213.28 -1.91 13.57 16 19 N -0.34 -13.01 3.63 -337.50 -1.23 -14.23 16 20 C 0.23 8.80 5.00 85.63 0.43 9.22 16 21 C -0.56 -27.78 9.94 25.60 0.25 -27.53 16 22 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 23 C 0.03 1.28 5.47 84.66 0.46 1.74 16 24 N -0.93 -52.63 13.96 21.45 0.30 -52.33 16 25 Si 0.95 35.84 27.47 68.60 1.88 37.72 16 26 H -0.25 -8.88 7.11 99.48 0.71 -8.18 16 27 H -0.29 -11.25 7.11 99.48 0.71 -10.55 16 28 H -0.24 -7.80 6.54 99.48 0.65 -7.15 16 29 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.09 2.18 7.14 -2.39 -0.02 2.17 16 31 H 0.12 2.38 8.14 -2.38 -0.02 2.36 16 32 H 0.18 7.40 5.77 -2.91 -0.02 7.38 16 33 H 0.14 4.22 7.63 -2.91 -0.02 4.20 16 34 H 0.17 2.53 6.25 -2.91 -0.02 2.51 16 35 H 0.06 0.42 8.14 -2.39 -0.02 0.41 16 36 H 0.09 0.36 8.07 -2.39 -0.02 0.34 16 37 H 0.07 0.57 6.23 -2.38 -0.01 0.55 16 38 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.07 0.71 6.19 -2.39 -0.01 0.69 16 40 H 0.09 0.44 8.07 -2.38 -0.02 0.42 16 41 H 0.17 3.66 6.14 -2.91 -0.02 3.64 16 42 H 0.07 2.33 7.20 -2.39 -0.02 2.31 16 43 H 0.09 2.97 6.61 -2.39 -0.02 2.96 16 44 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -77.96 368.96 0.55 -77.40 By element: Atomic # 1 Polarization: 36.91 SS G_CDS: -0.91 Total: 36.00 kcal Atomic # 6 Polarization: 16.80 SS G_CDS: 8.56 Total: 25.36 kcal Atomic # 7 Polarization: -139.22 SS G_CDS: -8.92 Total: -148.14 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.06 Total: -28.35 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: 1.88 Total: 37.72 kcal Total: -77.96 0.55 -77.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444358216.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.920 kcal (2) G-P(sol) polarization free energy of solvation -77.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds