Wall clock time and date at job start Sat Apr 11 2020 02:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33395 * 125.20044 * 2 1 4 4 C 1.38424 * 114.91694 * 180.21194 * 3 2 1 5 5 C 1.50701 * 122.53749 * 179.75870 * 4 3 2 6 6 H 1.09004 * 109.47226 * 19.73245 * 5 4 3 7 7 C 1.52998 * 109.47193 * 259.73194 * 5 4 3 8 8 N 1.46899 * 109.47243 * 139.73184 * 5 4 3 9 9 C 1.46903 * 111.00407 * 204.99945 * 8 5 4 10 10 H 1.09001 * 109.46749 * 325.00284 * 9 8 5 11 11 C 1.52998 * 109.47199 * 204.99823 * 9 8 5 12 12 C 1.52995 * 109.46988 * 65.00363 * 11 9 8 13 13 C 1.50703 * 109.47496 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99061 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00430 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99875 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00083 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46841 * 60.00405 * 17 15 13 19 19 H 1.48501 * 109.47190 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47186 * 300.00382 * 17 15 13 21 21 C 1.50702 * 109.46915 * 84.99732 * 9 8 5 22 22 C 1.38234 * 119.99895 * 39.73135 * 21 9 8 23 23 C 1.38241 * 120.00059 * 180.36621 * 22 21 9 24 24 C 1.38234 * 119.99640 * 359.83734 * 23 22 21 25 25 C 1.38234 * 120.00264 * 0.13873 * 24 23 22 26 26 C 1.38230 * 119.99880 * 359.95214 * 25 24 23 27 27 C 1.33386 * 114.92412 * 359.48535 * 4 3 2 28 28 S 1.75880 * 125.20470 * 179.68566 * 2 1 3 29 29 H 1.08998 * 109.46924 * 180.28941 * 1 2 3 30 30 H 1.09004 * 109.47111 * 300.28864 * 1 2 3 31 31 H 1.08998 * 109.47213 * 60.28885 * 1 2 3 32 32 H 1.07999 * 122.53964 * 359.96647 * 3 2 1 33 33 H 1.08995 * 109.47239 * 300.00005 * 7 5 4 34 34 H 1.09002 * 109.47067 * 60.00295 * 7 5 4 35 35 H 1.09000 * 109.47030 * 179.97438 * 7 5 4 36 36 H 1.00905 * 110.99850 * 328.95672 * 8 5 4 37 37 H 1.08998 * 109.46578 * 184.99959 * 11 9 8 38 38 H 1.08991 * 109.47306 * 305.00165 * 11 9 8 39 39 H 1.09004 * 109.47004 * 299.99674 * 12 11 9 40 40 H 1.09000 * 109.47572 * 59.99308 * 12 11 9 41 41 H 0.97005 * 120.00388 * 179.97438 * 16 15 13 42 42 H 1.08001 * 120.00279 * 0.27436 * 22 21 9 43 43 H 1.07997 * 119.99852 * 179.97438 * 23 22 21 44 44 H 1.07999 * 119.99712 * 180.11389 * 24 23 22 45 45 H 1.08001 * 119.99769 * 179.97438 * 25 24 23 46 46 H 1.08000 * 120.00376 * 180.02562 * 26 25 24 47 47 H 1.07995 * 125.20890 * 180.25257 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 -0.0046 5 6 4.6623 1.9483 -0.0107 6 1 4.2010 2.8730 0.3361 7 6 5.1921 2.1447 -1.4325 8 7 5.7736 1.5910 0.8810 9 6 6.4624 2.7923 1.3713 10 1 6.4668 3.5527 0.5904 11 6 7.9028 2.4373 1.7456 12 6 8.6675 2.0168 0.4889 13 6 10.0864 1.6677 0.8574 14 1 10.4102 1.7383 1.8853 15 6 10.9709 1.2573 -0.1174 16 7 10.5763 1.1709 -1.3690 17 14 12.7298 0.8253 0.3394 18 1 12.7271 -0.2939 1.3155 19 1 13.4720 0.4171 -0.8804 20 1 13.3889 2.0097 0.9461 21 6 5.7441 3.3230 2.5852 22 6 5.2409 2.4468 3.5285 23 6 4.5754 2.9332 4.6382 24 6 4.4161 4.2961 4.8062 25 6 4.9197 5.1723 3.8631 26 6 5.5836 4.6857 2.7525 27 6 3.9751 -0.4476 0.0025 28 16 2.5210 -1.4371 0.0079 29 1 -0.3633 -1.0276 0.0052 30 1 -0.3633 0.5183 0.8874 31 1 -0.3633 0.5093 -0.8925 32 1 1.8668 2.0895 -0.0005 33 1 5.6534 1.2201 -1.7794 34 1 4.3675 2.4099 -2.0942 35 1 5.9327 2.9445 -1.4370 36 1 5.4523 1.0199 1.6483 37 1 8.3868 3.3060 2.1918 38 1 7.9001 1.6153 2.4613 39 1 8.1834 1.1481 0.0427 40 1 8.6701 2.8388 -0.2269 41 1 11.1986 0.8825 -2.0549 42 1 5.3664 1.3820 3.3979 43 1 4.1819 2.2486 5.3750 44 1 3.8977 4.6762 5.6740 45 1 4.7949 6.2370 3.9942 46 1 5.9775 5.3703 2.0159 47 1 4.9862 -0.8270 0.0042 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453232194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:20:11 Heat of formation + Delta-G solvation = 40.889792 kcal Electronic energy + Delta-G solvation = -25518.337746 eV Core-core repulsion = 22177.717871 eV Total energy + Delta-G solvation = -3340.619875 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.151 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.72327 -38.59479 -36.29760 -33.74625 -32.63402 -31.03690 -30.80921 -30.24266 -28.67561 -26.73297 -25.97601 -23.95169 -23.32756 -22.46029 -21.03667 -20.40509 -19.62873 -18.66403 -17.22412 -16.92876 -16.10478 -15.73449 -15.08577 -14.97159 -14.39605 -14.33971 -14.16258 -13.96573 -13.71135 -13.28456 -13.18384 -13.05928 -12.82846 -12.60871 -12.36369 -12.21113 -11.97530 -11.95397 -11.67338 -11.51213 -11.29153 -11.11345 -11.04559 -10.91572 -10.80554 -10.53105 -10.41842 -10.33459 -9.63322 -9.34687 -8.97410 -8.82899 -8.56125 -8.45311 -8.30444 -8.23335 -7.98417 -5.87654 -3.88592 1.04327 1.47420 1.49525 1.65784 2.02388 2.72764 3.39266 3.43499 3.46183 3.89476 4.42024 4.55121 4.77047 4.92316 4.98261 5.03812 5.07532 5.16848 5.21588 5.31712 5.40696 5.45255 5.47929 5.59671 5.60138 5.63245 5.68571 5.79908 5.81126 6.04974 6.06830 6.07747 6.13368 6.23774 6.29571 6.44866 6.52708 6.54712 6.57124 6.62979 6.70584 6.76977 6.89463 7.10031 7.29160 7.49999 7.77653 7.85370 8.07827 8.23281 8.58168 9.19723 9.73879 11.23131 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.008841 B = 0.003890 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3166.253380 B = 7196.973364 C = 9459.379563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.187 4.187 3 C -0.130 4.130 4 C -0.102 4.102 5 C 0.146 3.854 6 H 0.046 0.954 7 C -0.133 4.133 8 N -0.659 5.659 9 C 0.125 3.875 10 H 0.083 0.917 11 C -0.091 4.091 12 C 0.033 3.967 13 C -0.519 4.519 14 H 0.050 0.950 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.886 3.114 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.279 1.279 21 C -0.096 4.096 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.133 4.133 25 C -0.120 4.120 26 C -0.116 4.116 27 C -0.186 4.186 28 S 0.079 5.921 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.134 0.866 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.338 0.662 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.034 0.966 40 H 0.008 0.992 41 H 0.258 0.742 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.121 0.879 47 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.284 1.709 5.784 22.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.304 4.304 3 C -0.161 4.161 4 C -0.114 4.114 5 C 0.034 3.966 6 H 0.064 0.936 7 C -0.191 4.191 8 N -0.291 5.291 9 C 0.015 3.985 10 H 0.101 0.899 11 C -0.129 4.129 12 C -0.004 4.004 13 C -0.557 4.557 14 H 0.068 0.932 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.714 3.286 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.098 4.098 22 C -0.135 4.135 23 C -0.136 4.136 24 C -0.151 4.151 25 C -0.138 4.138 26 C -0.134 4.134 27 C -0.321 4.321 28 S 0.343 5.657 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.152 0.848 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.158 0.842 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.026 0.974 41 H 0.068 0.932 42 H 0.138 0.862 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.135 0.865 46 H 0.139 0.861 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -21.052 -0.048 5.078 21.656 hybrid contribution 0.765 1.601 0.925 2.001 sum -20.287 1.553 6.004 21.214 Atomic orbital electron populations 1.20280 0.88157 1.02584 1.02706 1.24366 0.99655 0.95805 1.10528 1.19922 0.92474 0.99134 1.04584 1.18975 0.94000 0.94667 1.03723 1.20143 0.88196 0.93082 0.95160 0.93563 1.21771 1.00134 1.03291 0.93902 1.60803 1.27381 1.18593 1.22327 1.20912 0.94832 0.91287 0.91428 0.89912 1.21625 0.90493 0.99594 1.01147 1.18984 0.93222 0.97079 0.91135 1.21293 0.96347 1.44363 0.93727 0.93213 1.24968 0.98277 0.95952 0.95083 1.69960 1.35115 1.48041 1.00220 0.86765 0.85385 0.78794 0.77643 1.20393 1.21416 1.20447 1.21014 0.96953 0.93830 0.97998 1.20949 0.98553 0.99640 0.94364 1.21070 0.99362 0.95451 0.97702 1.21055 1.01171 0.93574 0.99282 1.21105 0.98670 0.99367 0.94666 1.21094 0.99150 0.95050 0.98124 1.25545 1.01852 0.95772 1.08967 1.84202 0.97583 1.10025 1.73907 0.91670 0.90860 0.90807 0.84805 0.91418 0.93324 0.91938 0.84168 0.93406 0.93331 0.94756 0.97406 0.93213 0.86248 0.86504 0.86637 0.86478 0.86133 0.80895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.38 36.01 0.37 -0.24 16 2 C -0.19 -2.03 6.51 -36.00 -0.23 -2.26 16 3 C -0.13 -1.54 9.82 -41.21 -0.40 -1.95 16 4 C -0.10 -1.34 4.61 -106.25 -0.49 -1.83 16 5 C 0.15 2.07 2.72 -68.87 -0.19 1.88 16 6 H 0.05 0.65 7.58 -51.93 -0.39 0.26 16 7 C -0.13 -2.00 9.38 37.16 0.35 -1.65 16 8 N -0.66 -10.38 5.15 -102.17 -0.53 -10.91 16 9 C 0.13 2.08 2.04 -68.86 -0.14 1.94 16 10 H 0.08 1.42 6.98 -51.93 -0.36 1.05 16 11 C -0.09 -1.86 4.81 -26.73 -0.13 -1.99 16 12 C 0.03 0.84 4.86 -27.88 -0.14 0.71 16 13 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 14 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 17 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 C -0.10 -1.41 4.61 -104.62 -0.48 -1.90 16 22 C -0.12 -1.60 9.12 -39.58 -0.36 -1.97 16 23 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 24 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 25 C -0.12 -1.44 10.05 -39.59 -0.40 -1.84 16 26 C -0.12 -1.57 9.67 -39.59 -0.38 -1.95 16 27 C -0.19 -2.46 10.23 29.04 0.30 -2.16 16 28 S 0.08 0.90 23.33 -107.50 -2.51 -1.61 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 1.01 7.43 -51.93 -0.39 0.62 16 36 H 0.34 5.05 5.65 -39.29 -0.22 4.83 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.03 0.94 7.75 -51.93 -0.40 0.53 16 40 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.12 1.59 6.51 -52.49 -0.34 1.25 16 43 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 46 H 0.12 1.52 8.04 -52.49 -0.42 1.10 16 47 H 0.17 2.42 8.03 -52.49 -0.42 2.00 16 LS Contribution 397.45 15.07 5.99 5.99 Total: -1.00 -30.59 397.45 -12.43 -43.01 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -7.57 Total: 5.38 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: -3.53 Total: -32.54 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.21 Total: -37.23 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.51 Total: -1.61 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.59 -12.43 -43.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453232194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.903 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds