Wall clock time and date at job start Sat Apr 11 2020 02:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33395 * 125.20044 * 2 1 4 4 C 1.38424 * 114.91694 * 180.21194 * 3 2 1 5 5 C 1.50701 * 122.53749 * 179.75870 * 4 3 2 6 6 H 1.09004 * 109.47226 * 19.73245 * 5 4 3 7 7 C 1.52998 * 109.47193 * 259.73194 * 5 4 3 8 8 N 1.46899 * 109.47243 * 139.73184 * 5 4 3 9 9 C 1.46903 * 111.00407 * 204.99945 * 8 5 4 10 10 H 1.09001 * 109.46749 * 325.00284 * 9 8 5 11 11 C 1.52998 * 109.47199 * 204.99823 * 9 8 5 12 12 C 1.52995 * 109.46988 * 65.00363 * 11 9 8 13 13 C 1.50703 * 109.47496 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99061 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00430 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99875 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00083 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46841 * 60.00405 * 17 15 13 19 19 H 1.48501 * 109.47190 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47186 * 300.00382 * 17 15 13 21 21 C 1.50702 * 109.46915 * 84.99732 * 9 8 5 22 22 C 1.38234 * 119.99895 * 39.73135 * 21 9 8 23 23 C 1.38241 * 120.00059 * 180.36621 * 22 21 9 24 24 C 1.38234 * 119.99640 * 359.83734 * 23 22 21 25 25 C 1.38234 * 120.00264 * 0.13873 * 24 23 22 26 26 C 1.38230 * 119.99880 * 359.95214 * 25 24 23 27 27 C 1.33386 * 114.92412 * 359.48535 * 4 3 2 28 28 S 1.75880 * 125.20470 * 179.68566 * 2 1 3 29 29 H 1.08998 * 109.46924 * 180.28941 * 1 2 3 30 30 H 1.09004 * 109.47111 * 300.28864 * 1 2 3 31 31 H 1.08998 * 109.47213 * 60.28885 * 1 2 3 32 32 H 1.07999 * 122.53964 * 359.96647 * 3 2 1 33 33 H 1.08995 * 109.47239 * 300.00005 * 7 5 4 34 34 H 1.09002 * 109.47067 * 60.00295 * 7 5 4 35 35 H 1.09000 * 109.47030 * 179.97438 * 7 5 4 36 36 H 1.00905 * 110.99850 * 328.95672 * 8 5 4 37 37 H 1.08998 * 109.46578 * 184.99959 * 11 9 8 38 38 H 1.08991 * 109.47306 * 305.00165 * 11 9 8 39 39 H 1.09004 * 109.47004 * 299.99674 * 12 11 9 40 40 H 1.09000 * 109.47572 * 59.99308 * 12 11 9 41 41 H 0.97005 * 120.00388 * 179.97438 * 16 15 13 42 42 H 1.08001 * 120.00279 * 0.27436 * 22 21 9 43 43 H 1.07997 * 119.99852 * 179.97438 * 23 22 21 44 44 H 1.07999 * 119.99712 * 180.11389 * 24 23 22 45 45 H 1.08001 * 119.99769 * 179.97438 * 25 24 23 46 46 H 1.08000 * 120.00376 * 180.02562 * 26 25 24 47 47 H 1.07995 * 125.20890 * 180.25257 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 -0.0046 5 6 4.6623 1.9483 -0.0107 6 1 4.2010 2.8730 0.3361 7 6 5.1921 2.1447 -1.4325 8 7 5.7736 1.5910 0.8810 9 6 6.4624 2.7923 1.3713 10 1 6.4668 3.5527 0.5904 11 6 7.9028 2.4373 1.7456 12 6 8.6675 2.0168 0.4889 13 6 10.0864 1.6677 0.8574 14 1 10.4102 1.7383 1.8853 15 6 10.9709 1.2573 -0.1174 16 7 10.5763 1.1709 -1.3690 17 14 12.7298 0.8253 0.3394 18 1 12.7271 -0.2939 1.3155 19 1 13.4720 0.4171 -0.8804 20 1 13.3889 2.0097 0.9461 21 6 5.7441 3.3230 2.5852 22 6 5.2409 2.4468 3.5285 23 6 4.5754 2.9332 4.6382 24 6 4.4161 4.2961 4.8062 25 6 4.9197 5.1723 3.8631 26 6 5.5836 4.6857 2.7525 27 6 3.9751 -0.4476 0.0025 28 16 2.5210 -1.4371 0.0079 29 1 -0.3633 -1.0276 0.0052 30 1 -0.3633 0.5183 0.8874 31 1 -0.3633 0.5093 -0.8925 32 1 1.8668 2.0895 -0.0005 33 1 5.6534 1.2201 -1.7794 34 1 4.3675 2.4099 -2.0942 35 1 5.9327 2.9445 -1.4370 36 1 5.4523 1.0199 1.6483 37 1 8.3868 3.3060 2.1918 38 1 7.9001 1.6153 2.4613 39 1 8.1834 1.1481 0.0427 40 1 8.6701 2.8388 -0.2269 41 1 11.1986 0.8825 -2.0549 42 1 5.3664 1.3820 3.3979 43 1 4.1819 2.2486 5.3750 44 1 3.8977 4.6762 5.6740 45 1 4.7949 6.2370 3.9942 46 1 5.9775 5.3703 2.0159 47 1 4.9862 -0.8270 0.0042 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453232194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:20:10 Heat of formation + Delta-G solvation = 26.874921 kcal Electronic energy + Delta-G solvation = -25518.945477 eV Core-core repulsion = 22177.717871 eV Total energy + Delta-G solvation = -3341.227606 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.151 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.83614 -39.57974 -37.50347 -35.46866 -34.18363 -32.18629 -31.80678 -31.70103 -29.94459 -27.90311 -27.43775 -25.31820 -24.66243 -23.48512 -22.51198 -21.58311 -20.98137 -19.68586 -18.48247 -18.20126 -17.79165 -16.85548 -16.48434 -16.21068 -15.99917 -15.43184 -15.24722 -14.99527 -14.74112 -14.55016 -14.23585 -14.13925 -14.10828 -13.93768 -13.62291 -13.40417 -13.31826 -13.15581 -12.98611 -12.83961 -12.68891 -12.53122 -12.51340 -12.19329 -12.09632 -12.00239 -11.83072 -11.58642 -11.42848 -11.24395 -11.08605 -10.47023 -9.80986 -9.58225 -9.47262 -9.27675 -9.25349 -8.12382 -6.22396 0.09740 0.46671 0.51620 0.74238 1.06964 1.39470 1.42404 1.50075 1.75084 2.43968 2.89647 3.19564 3.22114 3.75541 3.87830 3.97484 4.10550 4.16862 4.27961 4.29753 4.33956 4.41088 4.50742 4.56688 4.61608 4.67410 4.69992 4.71822 4.77454 4.80375 4.95419 4.99802 5.06568 5.11181 5.13899 5.17990 5.22226 5.35409 5.39999 5.45475 5.58155 5.59411 5.60831 5.62889 5.70177 5.89767 6.03937 6.14038 6.26154 6.35780 6.54782 6.96204 7.45086 8.98218 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.008841 B = 0.003890 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3166.253380 B = 7196.973364 C = 9459.379563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.176 4.176 3 C -0.147 4.147 4 C -0.101 4.101 5 C 0.154 3.846 6 H 0.052 0.948 7 C -0.128 4.128 8 N -0.673 5.673 9 C 0.139 3.861 10 H 0.071 0.929 11 C -0.076 4.076 12 C 0.046 3.954 13 C -0.544 4.544 14 H 0.052 0.948 15 C 0.003 3.997 16 N -0.929 5.929 17 Si 0.957 3.043 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.269 1.269 21 C -0.112 4.112 22 C -0.128 4.128 23 C -0.120 4.120 24 C -0.128 4.128 25 C -0.120 4.120 26 C -0.129 4.129 27 C -0.211 4.211 28 S 0.097 5.903 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.148 0.852 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.043 0.957 36 H 0.341 0.659 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.008 0.992 40 H -0.021 1.021 41 H 0.261 0.739 42 H 0.116 0.884 43 H 0.140 0.860 44 H 0.147 0.853 45 H 0.143 0.857 46 H 0.122 0.878 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.165 2.201 7.712 24.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.293 4.293 3 C -0.177 4.177 4 C -0.114 4.114 5 C 0.042 3.958 6 H 0.070 0.930 7 C -0.186 4.186 8 N -0.305 5.305 9 C 0.029 3.971 10 H 0.089 0.911 11 C -0.115 4.115 12 C 0.009 3.991 13 C -0.582 4.582 14 H 0.070 0.930 15 C -0.195 4.195 16 N -0.569 5.569 17 Si 0.782 3.218 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.194 1.194 21 C -0.114 4.114 22 C -0.147 4.147 23 C -0.138 4.138 24 C -0.146 4.146 25 C -0.138 4.138 26 C -0.148 4.148 27 C -0.347 4.347 28 S 0.361 5.639 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.166 0.834 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.163 0.837 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.027 0.973 40 H -0.002 1.002 41 H 0.069 0.931 42 H 0.134 0.866 43 H 0.158 0.842 44 H 0.164 0.836 45 H 0.161 0.839 46 H 0.140 0.860 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -22.942 0.446 7.020 23.996 hybrid contribution 1.287 1.441 0.327 1.960 sum -21.655 1.887 7.346 22.945 Atomic orbital electron populations 1.20424 0.85675 1.03706 1.04012 1.24818 1.01195 0.94952 1.08330 1.20013 0.91685 1.00244 1.05750 1.18940 0.94512 0.94034 1.03880 1.20024 0.87941 0.93937 0.93880 0.92963 1.21718 1.00280 1.01294 0.95302 1.60700 1.28439 1.18573 1.22796 1.20502 0.92927 0.91276 0.92385 0.91064 1.21369 0.92756 0.99022 0.98304 1.18763 0.92910 0.94866 0.92610 1.21743 0.97861 1.44589 0.93974 0.93010 1.25879 1.03037 0.95668 0.94921 1.70105 1.36778 1.48707 1.01321 0.85631 0.79629 0.78921 0.77623 1.19422 1.20823 1.19383 1.20739 0.98439 0.94674 0.97513 1.21023 0.99217 0.99412 0.94999 1.21370 0.98628 0.96473 0.97341 1.21460 1.00150 0.93151 0.99817 1.21421 0.97616 1.00943 0.93805 1.21246 0.99814 0.94552 0.99165 1.25474 1.02152 0.96585 1.10483 1.84096 0.96412 1.09946 1.73465 0.90676 0.89443 0.89438 0.83400 0.93829 0.91175 0.93763 0.83725 0.93782 0.93732 0.97329 1.00229 0.93065 0.86628 0.84244 0.83565 0.83911 0.85990 0.82700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.38 71.24 0.74 -0.27 16 2 C -0.18 -3.49 6.51 24.59 0.16 -3.33 16 3 C -0.15 -3.30 9.82 21.22 0.21 -3.09 16 4 C -0.10 -2.70 4.61 -20.92 -0.10 -2.79 16 5 C 0.15 4.54 2.72 44.17 0.12 4.66 16 6 H 0.05 1.49 7.58 -2.38 -0.02 1.47 16 7 C -0.13 -4.10 9.38 71.98 0.68 -3.42 16 8 N -0.67 -22.53 5.15 -477.15 -2.46 -24.99 16 9 C 0.14 4.87 2.04 44.17 0.09 4.96 16 10 H 0.07 2.62 6.98 -2.39 -0.02 2.60 16 11 C -0.08 -3.30 4.81 30.59 0.15 -3.15 16 12 C 0.05 2.48 4.86 29.85 0.15 2.63 16 13 C -0.54 -32.15 9.11 25.60 0.23 -31.92 16 14 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 15 C 0.00 0.15 5.46 84.65 0.46 0.62 16 16 N -0.93 -58.08 13.29 21.45 0.28 -57.80 16 17 Si 0.96 45.77 29.54 68.60 2.03 47.80 16 18 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 19 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 21 C -0.11 -3.31 4.61 -19.87 -0.09 -3.40 16 22 C -0.13 -3.44 9.12 22.27 0.20 -3.24 16 23 C -0.12 -2.65 10.05 22.27 0.22 -2.42 16 24 C -0.13 -2.53 10.05 22.27 0.22 -2.31 16 25 C -0.12 -2.57 10.05 22.27 0.22 -2.35 16 26 C -0.13 -3.42 9.67 22.27 0.22 -3.20 16 27 C -0.21 -5.81 10.23 66.72 0.68 -5.12 16 28 S 0.10 2.13 23.33 -56.49 -1.32 0.82 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 30 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 33 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.04 1.54 7.43 -2.39 -0.02 1.52 16 36 H 0.34 10.79 5.65 -89.69 -0.51 10.28 16 37 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.01 0.49 7.75 -2.38 -0.02 0.47 16 40 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 41 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 42 H 0.12 3.11 6.51 -2.91 -0.02 3.09 16 43 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 44 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 45 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 46 H 0.12 3.08 8.04 -2.91 -0.02 3.06 16 47 H 0.16 4.75 8.03 -2.91 -0.02 4.73 16 Total: -1.00 -67.91 397.45 3.54 -64.37 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 0.44 Total: 26.95 kcal Atomic # 6 Polarization: -61.71 SS G_CDS: 4.56 Total: -57.15 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -2.17 Total: -82.79 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -1.32 Total: 0.82 kcal Total: -67.91 3.54 -64.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453232194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.248 kcal (2) G-P(sol) polarization free energy of solvation -67.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds